GCF_900450505.1_51765_F02_genomic - 1 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NZ_UGGM01000001 (original name was: NZ_UGGM01000001.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 2.1	NRPS	388,352	431,717

Region	Type	From	To	Most similar known cluster	Similarity
Region 2.1	NRPS	388,352	431,717

No secondary metabolite regions were found in these records:: NZ_UGGM01000002 (original name was: NZ_UGGM01000002.1)

Compact view

c00002_NZ_UGGM.. - Region 1 - NRPS

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Location: 388,352 - 431,717 nt. (total: 43,366 nt) Show pHMM detection rules used

NRPS: cds(Condensation and (AMP-binding or A-OX))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

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Gene details

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NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

NRPS/PKS modules

Pfam domains

TIGRFAM domains

Detailed domain annotation

Selected features only

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Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000460.1	0.29	NRP	vulnibactin	Vibrio vulnificus CMCP6
BGC0001343.1	0.28	Polyketide	aurachin A, aurachin D	Stigmatella aurantiaca Sg a15
BGC0000352.1	0.26	NRP	fimsbactin A	Acinetobacter sp. ADP1
BGC0000373.1	0.26	NRP	holomycin	Streptomyces clavuligerus ATCC 27064
BGC0000343.1	0.25	NRP	enterobactin	Pseudomonas sp. J465
BGC0000662.1	0.24	Terpene	grixazone	Streptomyces griseus subsp. griseus NBRC 13350
BGC0001444.1	0.23	Other	caboxamycin	Streptomyces sp. NTK 937
BGC0001538.1	0.23	NRP, Polyketide	caboxamycin	Streptomyces sp. NTK 937
BGC0002000.1	0.22	Polyketide	setomimycin	Streptomyces aurantiacus JA 4570
BGC0000225.1	0.22	Polyketide	frenolicin B	Streptomyces roseofulvus

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000460.1	0.62	NRP	vulnibactin	Vibrio vulnificus CMCP6
BGC0001343.1	0.61	Polyketide	aurachin A, aurachin D	Stigmatella aurantiaca Sg a15
BGC0000352.1	0.60	NRP	fimsbactin A	Acinetobacter sp. ADP1
BGC0000373.1	0.60	NRP	holomycin	Streptomyces clavuligerus ATCC 27064
BGC0000343.1	0.58	NRP	enterobactin	Pseudomonas sp. J465
BGC0000662.1	0.57	Terpene	grixazone	Streptomyces griseus subsp. griseus NBRC 13350
BGC0001444.1	0.56	Other	caboxamycin	Streptomyces sp. NTK 937
BGC0001538.1	0.56	NRP, Polyketide	caboxamycin	Streptomyces sp. NTK 937
BGC0002000.1	0.55	Polyketide	setomimycin	Streptomyces aurantiacus JA 4570
BGC0000225.1	0.55	Polyketide	frenolicin B	Streptomyces roseofulvus

Similar known gene clusters

No matches found.

Module view

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Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 388351 - 431717:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (cys)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg2_345

Search NORINE for peptide: strict or relaxed

AMP-binding (458..867): cys

NRPSPredictor2: cys

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: cys
Small clusters prediction:: cys
Single AA prediction:: cys

Stachelhaus prediction details:

Stachelhaus sequence:: DMFnvGvIWK
Nearest Stachelhaus code:: thr
Stachelhaus code match:: 70% (weak)

ctg2_348

Search NORINE for peptide: strict or relaxed

AMP-binding (14..416): X

NRPSPredictor2: hydrophobic-aliphatic

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: alpsLGVTFK
Nearest Stachelhaus code:: ile
Stachelhaus code match:: 60% (weak)

ctg2_350

Search NORINE for peptide: strict or relaxed

AMP-binding (16..412): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: gfpYLGagCK
Nearest Stachelhaus code:: leu
Stachelhaus code match:: 50% (weak)