GCF_000144605.1_ASM14460v1_genomic - 3 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NC_014375.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 1	T3PKS	2,142,996	2,184,063	pyoverdin	NRP	1%
Region 2	terpene	2,275,202	2,298,805	carotenoid	Terpene	50%
Region 3	resorcinol	3,077,106	3,118,248

NC_014375.1 - Region 1 - T3PKS

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Location: 2,142,996 - 2,184,063 nt. (total: 41,068 nt) Show pHMM detection rules used

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

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Gene details

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NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Detailed domain annotation

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Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000282.1	0.35	Polyketide	alkylresorcinol	Streptomyces griseus subsp. griseus NBRC 13350
BGC0001962.1	0.33	Polyketide	hierridin B, hierridin C	Cyanobium sp. LEGE 06113
BGC0001905.1	0.33	Polyketide	violapyrone B	Streptomyces somaliensis
BGC0000280.1	0.31	Polyketide	2,4-diacetylphloroglucinol	Pseudomonas fluorescens
BGC0000281.1	0.27	Polyketide	2,4-diacetylphloroglucinol	Pseudomonas fluorescens
BGC0001831.1	0.26	Polyketide	alkylpyrone-407, alkylpyrone-393	Myxococcus xanthus DK 1622
BGC0000513.1	0.22	RiPP	Ery-9, Ery-6, Ery-8, Ery-7, Ery-5, Ery-4, Ery-3	Saccharopolyspora erythraea NRRL 2338
BGC0000501.1	0.22	RiPP	catenulipeptin	Catenulispora acidiphila DSM 44928
BGC0000519.1	0.22	RiPP	labyrinthopeptin A2, labyrinthopeptin A1, labyrinthopeptin A3	Actinomadura namibiensis
BGC0000551.1	0.22	RiPP	SapB	Streptomyces coelicolor A3(2)

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000282.1	0.68	Polyketide	alkylresorcinol	Streptomyces griseus subsp. griseus NBRC 13350
BGC0001962.1	0.66	Polyketide	hierridin B, hierridin C	Cyanobium sp. LEGE 06113
BGC0001905.1	0.66	Polyketide	violapyrone B	Streptomyces somaliensis
BGC0000280.1	0.64	Polyketide	2,4-diacetylphloroglucinol	Pseudomonas fluorescens
BGC0000281.1	0.61	Polyketide	2,4-diacetylphloroglucinol	Pseudomonas fluorescens
BGC0001831.1	0.59	Polyketide	alkylpyrone-407, alkylpyrone-393	Myxococcus xanthus DK 1622
BGC0000513.1	0.55	RiPP	Ery-9, Ery-6, Ery-8, Ery-7, Ery-5, Ery-4, Ery-3	Saccharopolyspora erythraea NRRL 2338
BGC0000501.1	0.54	RiPP	catenulipeptin	Catenulispora acidiphila DSM 44928
BGC0000519.1	0.54	RiPP	labyrinthopeptin A2, labyrinthopeptin A1, labyrinthopeptin A3	Actinomadura namibiensis
BGC0000551.1	0.54	RiPP	SapB	Streptomyces coelicolor A3(2)

Similar known gene clusters

Detailed Pfam domain annotation

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Detailed TIGRFAM domain annotation

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NC_014375.1 - Region 2 - terpene

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Location: 2,275,202 - 2,298,805 nt. (total: 23,604 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

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Gene details

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MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000656.1	0.54	Terpene	zeaxanthin	Xanthobacter autotrophicus Py2
BGC0000647.1	0.36	Terpene	carotenoid	Rhodobacter sphaeroides
BGC0000650.1	0.34	Terpene	carotenoid	Algoriphagus sp. KK10202C
BGC0000630.1	0.31	Terpene	(2R,3S,3'S)-2-hydroxyastaxanthin	Paracoccus haeundaensis
BGC0000640.1	0.31	Terpene	carotenoid	Enterobacteriaceae bacterium DC404
BGC0000648.1	0.29	Terpene	carotenoid	Myxococcus xanthus
BGC0000633.1	0.29	Terpene	carotenoid	Streptomyces avermitilis
BGC0000641.1	0.28	Terpene	carotenoid	Enterobacteriaceae bacterium DC416
BGC0000639.1	0.28	Terpene	carotenoid	Enterobacteriaceae bacterium DC260
BGC0000638.1	0.28	Terpene	carotenoid	Pantoea ananatis

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000656.1	0.81	Terpene	zeaxanthin	Xanthobacter autotrophicus Py2
BGC0000647.1	0.69	Terpene	carotenoid	Rhodobacter sphaeroides
BGC0000650.1	0.67	Terpene	carotenoid	Algoriphagus sp. KK10202C
BGC0000630.1	0.64	Terpene	(2R,3S,3'S)-2-hydroxyastaxanthin	Paracoccus haeundaensis
BGC0000640.1	0.64	Terpene	carotenoid	Enterobacteriaceae bacterium DC404
BGC0000648.1	0.62	Terpene	carotenoid	Myxococcus xanthus
BGC0000633.1	0.62	Terpene	carotenoid	Streptomyces avermitilis
BGC0000641.1	0.62	Terpene	carotenoid	Enterobacteriaceae bacterium DC416
BGC0000639.1	0.62	Terpene	carotenoid	Enterobacteriaceae bacterium DC260
BGC0000638.1	0.62	Terpene	carotenoid	Pantoea ananatis

Similar known gene clusters

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

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NC_014375.1 - Region 3 - resorcinol

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Location: 3,077,106 - 3,118,248 nt. (total: 41,143 nt) Show pHMM detection rules used

resorcinol: DarB

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001156.1	0.20	Terpene	platencin	Streptomyces platensis
BGC0001140.1	0.20	Terpene	platensimycin, platencin	Streptomyces platensis
BGC0001783.1	0.15	Other	streptonigrin	Streptomyces flocculus
BGC0001765.1	0.15	Saccharide	salecan	Agrobacterium tumefaciens
BGC0001380.1	0.15	Saccharide	salecan	Agrobacterium sp. ZX09
BGC0000573.1	0.12	RiPP	caulonodin I, caulonodin II	Caulobacter sp. K31
BGC0000576.1	0.11	RiPP	rubrivinodin	Rubrivivax gelatinosus IL144
BGC0001786.1	0.11	RiPP	subterisin	Novosphingobium subterraneum
BGC0001417.1	0.07	NRP, Polyketide	myxochromide D	Cystobacterineae bacterium
BGC0000838.1	0.07	Polyketide	flexirubin	Flavobacterium johnsoniae UW101

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001156.1	0.53	Terpene	platencin	Streptomyces platensis
BGC0001140.1	0.53	Terpene	platensimycin, platencin	Streptomyces platensis
BGC0001783.1	0.45	Other	streptonigrin	Streptomyces flocculus
BGC0001765.1	0.45	Saccharide	salecan	Agrobacterium tumefaciens
BGC0001380.1	0.45	Saccharide	salecan	Agrobacterium sp. ZX09
BGC0000573.1	0.40	RiPP	caulonodin I, caulonodin II	Caulobacter sp. K31
BGC0000576.1	0.37	RiPP	rubrivinodin	Rubrivivax gelatinosus IL144
BGC0001786.1	0.37	RiPP	subterisin	Novosphingobium subterraneum
BGC0001417.1	0.30	NRP, Polyketide	myxochromide D	Cystobacterineae bacterium
BGC0000838.1	0.28	Polyketide	flexirubin	Flavobacterium johnsoniae UW101

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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