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Overview
1.1
1.2
1.3

### Identified secondary metabolite regions using strictness 'relaxed'

NC_014375.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1 | T3PKS | 2,142,996 | 2,184,063 | pyoverdin | NRP | 1%
Region 2 | terpene | 2,275,202 | 2,298,805 | carotenoid | Terpene | 50%
Region 3 | resorcinol | 3,077,106 | 3,118,248 |

NC_014375.1 - Region 1 - T3PKS
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 2,142,996 - 2,184,063 nt. (total: 41,068 nt) Show pHMM detection rules used
T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
TTA codons
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
NRPS/PKS domains
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Detailed domain annotation
Shows NRPS- and PKS-related domains for each feature that contains them. Click on each domain for more information about the domain's location, consensus monomer prediction, and other details.
A glossary is available here.
Selected features only
Show module domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | T3PKS | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000282.1 |  | 0.35 | Polyketide | alkylresorcinol | Streptomyces griseus subsp. griseus NBRC 13350
BGC0001962.1 |  | 0.33 | Polyketide | hierridin B, hierridin C | Cyanobium sp. LEGE 06113
BGC0001905.1 |  | 0.33 | Polyketide | violapyrone B | Streptomyces somaliensis
BGC0000280.1 |  | 0.31 | Polyketide | 2,4-diacetylphloroglucinol | Pseudomonas fluorescens
BGC0000281.1 |  | 0.27 | Polyketide | 2,4-diacetylphloroglucinol | Pseudomonas fluorescens
BGC0001831.1 |  | 0.26 | Polyketide | alkylpyrone-407, alkylpyrone-393 | Myxococcus xanthus DK 1622
BGC0000513.1 |  | 0.22 | RiPP | Ery-9, Ery-6, Ery-8, Ery-7, Ery-5, Ery-4, Ery-3 | Saccharopolyspora erythraea NRRL 2338
BGC0000501.1 |  | 0.22 | RiPP | catenulipeptin | Catenulispora acidiphila DSM 44928
BGC0000519.1 |  | 0.22 | RiPP | labyrinthopeptin A2, labyrinthopeptin A1, labyrinthopeptin A3 | Actinomadura namibiensis
BGC0000551.1 |  | 0.22 | RiPP | SapB | Streptomyces coelicolor A3(2)

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000282.1 |  | 0.68 | Polyketide | alkylresorcinol | Streptomyces griseus subsp. griseus NBRC 13350
BGC0001962.1 |  | 0.66 | Polyketide | hierridin B, hierridin C | Cyanobium sp. LEGE 06113
BGC0001905.1 |  | 0.66 | Polyketide | violapyrone B | Streptomyces somaliensis
BGC0000280.1 |  | 0.64 | Polyketide | 2,4-diacetylphloroglucinol | Pseudomonas fluorescens
BGC0000281.1 |  | 0.61 | Polyketide | 2,4-diacetylphloroglucinol | Pseudomonas fluorescens
BGC0001831.1 |  | 0.59 | Polyketide | alkylpyrone-407, alkylpyrone-393 | Myxococcus xanthus DK 1622
BGC0000513.1 |  | 0.55 | RiPP | Ery-9, Ery-6, Ery-8, Ery-7, Ery-5, Ery-4, Ery-3 | Saccharopolyspora erythraea NRRL 2338
BGC0000501.1 |  | 0.54 | RiPP | catenulipeptin | Catenulispora acidiphila DSM 44928
BGC0000519.1 |  | 0.54 | RiPP | labyrinthopeptin A2, labyrinthopeptin A1, labyrinthopeptin A3 | Actinomadura namibiensis
BGC0000551.1 |  | 0.54 | RiPP | SapB | Streptomyces coelicolor A3(2)

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NC_014375.1 - Region 2 - terpene
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 2,275,202 - 2,298,805 nt. (total: 23,604 nt) Show pHMM detection rules used
terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
TTA codons
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | terpene | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000656.1 |  | 0.54 | Terpene | zeaxanthin | Xanthobacter autotrophicus Py2
BGC0000647.1 |  | 0.36 | Terpene | carotenoid | Rhodobacter sphaeroides
BGC0000650.1 |  | 0.34 | Terpene | carotenoid | Algoriphagus sp. KK10202C
BGC0000630.1 |  | 0.31 | Terpene | (2R,3S,3'S)-2-hydroxyastaxanthin | Paracoccus haeundaensis
BGC0000640.1 |  | 0.31 | Terpene | carotenoid | Enterobacteriaceae bacterium DC404
BGC0000648.1 |  | 0.29 | Terpene | carotenoid | Myxococcus xanthus
BGC0000633.1 |  | 0.29 | Terpene | carotenoid | Streptomyces avermitilis
BGC0000641.1 |  | 0.28 | Terpene | carotenoid | Enterobacteriaceae bacterium DC416
BGC0000639.1 |  | 0.28 | Terpene | carotenoid | Enterobacteriaceae bacterium DC260
BGC0000638.1 |  | 0.28 | Terpene | carotenoid | Pantoea ananatis

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000656.1 |  | 0.81 | Terpene | zeaxanthin | Xanthobacter autotrophicus Py2
BGC0000647.1 |  | 0.69 | Terpene | carotenoid | Rhodobacter sphaeroides
BGC0000650.1 |  | 0.67 | Terpene | carotenoid | Algoriphagus sp. KK10202C
BGC0000630.1 |  | 0.64 | Terpene | (2R,3S,3'S)-2-hydroxyastaxanthin | Paracoccus haeundaensis
BGC0000640.1 |  | 0.64 | Terpene | carotenoid | Enterobacteriaceae bacterium DC404
BGC0000648.1 |  | 0.62 | Terpene | carotenoid | Myxococcus xanthus
BGC0000633.1 |  | 0.62 | Terpene | carotenoid | Streptomyces avermitilis
BGC0000641.1 |  | 0.62 | Terpene | carotenoid | Enterobacteriaceae bacterium DC416
BGC0000639.1 |  | 0.62 | Terpene | carotenoid | Enterobacteriaceae bacterium DC260
BGC0000638.1 |  | 0.62 | Terpene | carotenoid | Pantoea ananatis

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NC_014375.1 - Region 3 - resorcinol
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 3,077,106 - 3,118,248 nt. (total: 41,143 nt) Show pHMM detection rules used
resorcinol: DarB

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
TTA codons
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | resorcinol | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001156.1 |  | 0.20 | Terpene | platencin | Streptomyces platensis
BGC0001140.1 |  | 0.20 | Terpene | platensimycin, platencin | Streptomyces platensis
BGC0001783.1 |  | 0.15 | Other | streptonigrin | Streptomyces flocculus
BGC0001765.1 |  | 0.15 | Saccharide | salecan | Agrobacterium tumefaciens
BGC0001380.1 |  | 0.15 | Saccharide | salecan | Agrobacterium sp. ZX09
BGC0000573.1 |  | 0.12 | RiPP | caulonodin I, caulonodin II | Caulobacter sp. K31
BGC0000576.1 |  | 0.11 | RiPP | rubrivinodin | Rubrivivax gelatinosus IL144
BGC0001786.1 |  | 0.11 | RiPP | subterisin | Novosphingobium subterraneum
BGC0001417.1 |  | 0.07 | NRP, Polyketide | myxochromide D | Cystobacterineae bacterium
BGC0000838.1 |  | 0.07 | Polyketide | flexirubin | Flavobacterium johnsoniae UW101

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001156.1 |  | 0.53 | Terpene | platencin | Streptomyces platensis
BGC0001140.1 |  | 0.53 | Terpene | platensimycin, platencin | Streptomyces platensis
BGC0001783.1 |  | 0.45 | Other | streptonigrin | Streptomyces flocculus
BGC0001765.1 |  | 0.45 | Saccharide | salecan | Agrobacterium tumefaciens
BGC0001380.1 |  | 0.45 | Saccharide | salecan | Agrobacterium sp. ZX09
BGC0000573.1 |  | 0.40 | RiPP | caulonodin I, caulonodin II | Caulobacter sp. K31
BGC0000576.1 |  | 0.37 | RiPP | rubrivinodin | Rubrivivax gelatinosus IL144
BGC0001786.1 |  | 0.37 | RiPP | subterisin | Novosphingobium subterraneum
BGC0001417.1 |  | 0.30 | NRP, Polyketide | myxochromide D | Cystobacterineae bacterium
BGC0000838.1 |  | 0.28 | Polyketide | flexirubin | Flavobacterium johnsoniae UW101

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names