GCF_000196095.1_ASM19609v1_genomic - 5 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NC_004603.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 1.1	betalactone	329,511	357,829
Region 1.2	arylpolyene	894,577	938,163	APE Vf	Other	85%
Region 1.3	ectoine	1,828,872	1,839,258	ectoine	Other	66%
Region 1.4	RiPP-like	3,214,141	3,225,007

NC_004605.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 2.1	siderophore	1,772,203	1,787,048	vibrioferrin	Other	54%

Region	Type	From	To	Most similar known cluster	Similarity
Region 1.1	betalactone	329,511	357,829
Region 1.2	arylpolyene	894,577	938,163	APE Vf	Other	85%
Region 1.3	ectoine	1,828,872	1,839,258	ectoine	Other	66%
Region 1.4	RiPP-like	3,214,141	3,225,007
Region 2.1	siderophore	1,772,203	1,787,048	vibrioferrin	Other	54%

Compact view

NC_004603.1 - Region 1 - betalactone

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Location: 329,511 - 357,829 nt. (total: 28,319 nt) Show pHMM detection rules used

betalactone: (HMGL-like and AMP-binding)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001859.1	0.20	Other (Phosphonate)	fosfomycin	Pseudomonas syringae
BGC0000904.1	0.15	Other	FR-900098	Streptomyces rubellomurinus
BGC0001441.1	0.14	Other	belactosin A, belactosin C	Streptomyces sp.
BGC0000597.1	0.13	RiPP	SWA-2138	Streptomyces sp. e14
BGC0000595.1	0.13	RiPP	SCO-2138	Streptomyces coelicolor A3(2)
BGC0000596.1	0.13	RiPP	SLI-2138	Streptomyces lividans TK24
BGC0000841.1	0.12	Other (Non-NRP beta-lactam)	alanylclavam, 2-hydroxymethylclavam, 2-formyloxymethylclavam, clavam-2-carboxylate, clavulanic acid	Streptomyces clavuligerus ATCC 27064
BGC0001164.1	0.12	Polyketide	1-heptadecene	Cyanothece sp. PCC 7822
BGC0001160.1	0.12	Polyketide	1-nonadecene, (14Z)-1,14-nonadecadiene	Synechococcus sp. PCC 7002
BGC0000871.1	0.12	Other (Nucleoside)	VEPE, AEPE, TG-1	Myxococcus xanthus DK 1622

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001859.1	0.52	Other (Phosphonate)	fosfomycin	Pseudomonas syringae
BGC0000904.1	0.45	Other	FR-900098	Streptomyces rubellomurinus
BGC0001441.1	0.44	Other	belactosin A, belactosin C	Streptomyces sp.
BGC0000597.1	0.41	RiPP	SWA-2138	Streptomyces sp. e14
BGC0000595.1	0.41	RiPP	SCO-2138	Streptomyces coelicolor A3(2)
BGC0000596.1	0.41	RiPP	SLI-2138	Streptomyces lividans TK24
BGC0000841.1	0.41	Other (Non-NRP beta-lactam)	alanylclavam, 2-hydroxymethylclavam, 2-formyloxymethylclavam, clavam-2-carboxylate, clavulanic acid	Streptomyces clavuligerus ATCC 27064
BGC0001164.1	0.40	Polyketide	1-heptadecene	Cyanothece sp. PCC 7822
BGC0001160.1	0.40	Polyketide	1-nonadecene, (14Z)-1,14-nonadecadiene	Synechococcus sp. PCC 7002
BGC0000871.1	0.40	Other (Nucleoside)	VEPE, AEPE, TG-1	Myxococcus xanthus DK 1622

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

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Detailed TIGRFAM domain annotation

Selected features only

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NC_004603.1 - Region 2 - arylpolyene

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Location: 894,577 - 938,163 nt. (total: 43,587 nt) Show pHMM detection rules used

arylpolyene: (APE_KS1 or APE_KS2)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000837.1	0.51	Other	APE Vf	Aliivibrio fischeri ES114
BGC0000836.1	0.32	Other	APE Ec	Escherichia coli CFT073
BGC0002008.1	0.31	Other	aryl polyenes	Xenorhabdus doucetiae
BGC0000236.1	0.23	Polyketide	kinamycin	Streptomyces murayamaensis
BGC0001596.1	0.22	Polyketide	fluostatins M-Q	Streptomyces albus
BGC0000228.1	0.22	Polyketide	granaticin	Streptomyces violaceoruber
BGC0001904.1	0.22	Polyketide	fluostatin	Micromonospora rosaria
BGC0001890.1	0.22	NRP	amphi-enterobactin 1, amphi-enterobactin 2, amphi-enterobactin 3, amphi-enterobactin 4	Vibrio campbellii ATCC BAA-1116
BGC0000237.1	0.22	Polyketide	lactonamycin Z	Streptomyces sanglieri
BGC0000248.1	0.21	Polyketide	naphtocyclinone	Streptomyces arenae

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000837.1	0.79	Other	APE Vf	Aliivibrio fischeri ES114
BGC0000836.1	0.65	Other	APE Ec	Escherichia coli CFT073
BGC0002008.1	0.64	Other	aryl polyenes	Xenorhabdus doucetiae
BGC0000236.1	0.56	Polyketide	kinamycin	Streptomyces murayamaensis
BGC0001596.1	0.55	Polyketide	fluostatins M-Q	Streptomyces albus
BGC0000228.1	0.55	Polyketide	granaticin	Streptomyces violaceoruber
BGC0001904.1	0.55	Polyketide	fluostatin	Micromonospora rosaria
BGC0001890.1	0.55	NRP	amphi-enterobactin 1, amphi-enterobactin 2, amphi-enterobactin 3, amphi-enterobactin 4	Vibrio campbellii ATCC BAA-1116
BGC0000237.1	0.55	Polyketide	lactonamycin Z	Streptomyces sanglieri
BGC0000248.1	0.54	Polyketide	naphtocyclinone	Streptomyces arenae

Similar known gene clusters

Detailed Pfam domain annotation

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Detailed TIGRFAM domain annotation

Selected features only

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NC_004603.1 - Region 3 - ectoine

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Location: 1,828,872 - 1,839,258 nt. (total: 10,387 nt) Show pHMM detection rules used

ectoine: ectoine_synt

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000856.1	0.53	Other	ectoine	Methylophaga thalassica
BGC0000859.1	0.53	Other	ectoine	Methylomicrobium alcaliphilum
BGC0000855.1	0.43	Other	ectoine	Methylomicrobium kenyense
BGC0000852.1	0.39	Other	ectoine	Sporosarcina pasteurii
BGC0000857.1	0.38	Other	ectoine	Methylophaga alcalica
BGC0000860.1	0.37	Other	ectoine	Methylarcula marina
BGC0000854.1	0.33	Other	ectoine	Methylomicrobium alcaliphilum 20Z
BGC0000858.1	0.33	Other	ectoine	Methylobacter marinus
BGC0000853.1	0.33	Other	ectoine	Streptomyces anulatus
BGC0000919.1	0.14	Other	phaseolotoxin	Pseudomonas syringae

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000856.1	0.80	Other	ectoine	Methylophaga thalassica
BGC0000859.1	0.80	Other	ectoine	Methylomicrobium alcaliphilum
BGC0000855.1	0.74	Other	ectoine	Methylomicrobium kenyense
BGC0000852.1	0.71	Other	ectoine	Sporosarcina pasteurii
BGC0000857.1	0.70	Other	ectoine	Methylophaga alcalica
BGC0000860.1	0.69	Other	ectoine	Methylarcula marina
BGC0000854.1	0.66	Other	ectoine	Methylomicrobium alcaliphilum 20Z
BGC0000858.1	0.66	Other	ectoine	Methylobacter marinus
BGC0000853.1	0.66	Other	ectoine	Streptomyces anulatus
BGC0000919.1	0.43	Other	phaseolotoxin	Pseudomonas syringae

Similar known gene clusters

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NC_004603.1 - Region 4 - RiPP-like

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Location: 3,214,141 - 3,225,007 nt. (total: 10,867 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000929.1	0.14	Other	xanthothricin	Burkholderia glumae
BGC0001133.1	0.08	NRP	taxlllaid A	Xenorhabdus bovienii SS-2004
BGC0000955.1	0.06	NRP, Polyketide	althiomycin	Myxococcus xanthus

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000929.1	0.43	Other	xanthothricin	Burkholderia glumae
BGC0001133.1	0.31	NRP	taxlllaid A	Xenorhabdus bovienii SS-2004
BGC0000955.1	0.27	NRP, Polyketide	althiomycin	Myxococcus xanthus

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NC_004605.1 - Region 1 - siderophore

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Location: 1,772,203 - 1,787,048 nt. (total: 14,846 nt) Show pHMM detection rules used

siderophore: IucA_IucC

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000946.1	0.82	Other	vibrioferrin	Vibrio parahaemolyticus
BGC0000947.1	0.41	Other	vibrioferrin	Vibrio alginolyticus
BGC0001408.1	0.39	Other	xanthoferrin	Xanthomonas oryzae pv. oryzae KACC 10331
BGC0000942.1	0.25	Other	petrobactin	Bacillus anthracis str. Ames
BGC0001555.1	0.20	RiPP	colicin V	Escherichia coli chi7122
BGC0000550.1	0.16	RiPP	salivaricin G32	Streptococcus salivarius
BGC0000943.1	0.15	Other	staphylobactin	Staphylococcus aureus subsp. aureus NCTC 8325
BGC0000883.1	0.15	Other	arginomycin	Streptomyces arginensis
BGC0000515.1	0.14	RiPP	geobacillin I	Geobacillus thermodenitrificans NG80-2
BGC0000506.1	0.14	RiPP	entianin	Bacillus subtilis subsp. spizizenii

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000946.1	0.94	Other	vibrioferrin	Vibrio parahaemolyticus
BGC0000947.1	0.73	Other	vibrioferrin	Vibrio alginolyticus
BGC0001408.1	0.71	Other	xanthoferrin	Xanthomonas oryzae pv. oryzae KACC 10331
BGC0000942.1	0.59	Other	petrobactin	Bacillus anthracis str. Ames
BGC0001555.1	0.52	RiPP	colicin V	Escherichia coli chi7122
BGC0000550.1	0.46	RiPP	salivaricin G32	Streptococcus salivarius
BGC0000943.1	0.46	Other	staphylobactin	Staphylococcus aureus subsp. aureus NCTC 8325
BGC0000883.1	0.44	Other	arginomycin	Streptomyces arginensis
BGC0000515.1	0.44	RiPP	geobacillin I	Geobacillus thermodenitrificans NG80-2
BGC0000506.1	0.43	RiPP	entianin	Bacillus subtilis subsp. spizizenii

Similar known gene clusters

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

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