GCF_000380145.1_ASM38014v1_genomic - 3 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NZ_KB904586.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 1.1	T3PKS	245,586	282,663

NZ_KB904598.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 13.1	RiPP-like	193,644	214,582

NZ_KB904599.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 14.1	RRE-containing	1	14,794

Region	Type	From	To	Similarity
Region 1.1	T3PKS	245,586	282,663
Region 13.1	RiPP-like	193,644	214,582
Region 14.1	RRE-containing	1	14,794

No secondary metabolite regions were found in these records:: NZ_KB904587.1; NZ_KB904588.1; NZ_KB904589.1; NZ_KB904590.1; NZ_KB904591.1; NZ_KB904592.1; NZ_KB904593.1; NZ_KB904594.1; NZ_KB904595.1; NZ_KB904596.1; NZ_KB904597.1; NZ_KB904600.1; NZ_KB904601.1; NZ_KB904602.1; NZ_KB904603.1; NZ_KB904604.1; NZ_KB904605.1; NZ_KB904606.1; NZ_KB904607.1; NZ_KB904608.1; NZ_KB904609.1; NZ_KB904610.1; NZ_KB904611.1; NZ_KB904612.1; NZ_KB904613.1; NZ_KB904614.1; NZ_KB904615.1; NZ_KB904616.1; NZ_KB904617.1; NZ_KB904618.1; NZ_KB904619.1; NZ_KB904620.1; NZ_KB904621.1; NZ_KB904622.1; NZ_KB904623.1; NZ_KB904624.1; NZ_KB904625.1; NZ_KB904626.1; NZ_KB904627.1; NZ_KB904628.1; NZ_KB904629.1; NZ_KB904630.1; NZ_KB904631.1; NZ_KB904632.1; NZ_KB904633.1

Compact view

NZ_KB904586.1 - Region 1 - T3PKS

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Location: 245,586 - 282,663 nt. (total: 37,078 nt) Show pHMM detection rules used

Region on contig edge.

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000255.1	0.23	Polyketide	pederin	Uncultured bacterium
BGC0002007.1	0.20	Terpene	atolypene A, atolypene B	Amycolatopsis tolypomycina
BGC0001863.1	0.19	RiPP, Terpene	bacillicn CER074	Bacillus mycoides
BGC0000286.1	0.17	Polyketide	viguiepinol	Streptomyces sp. KO-3988
BGC0001985.1	0.14	Other	pyrazomycin	Streptomyces candidus
BGC0000635.1	0.13	Terpene	carotenoid	Paracoccus sp. N81106
BGC0000642.1	0.13	Terpene	carotenoid	Enterobacteriaceae bacterium DC413
BGC0000877.1	0.13	Other	polyoxin A, polyoxin H	Streptomyces cacaoi subsp. asoensis
BGC0001080.1	0.13	Other (Phenazine)	endophenazine A, endophenazine B	Streptomyces anulatus
BGC0001776.1	0.12	Terpene	shearinine D	Penicillium janthinellum

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000255.1	0.56	Polyketide	pederin	Uncultured bacterium
BGC0002007.1	0.52	Terpene	atolypene A, atolypene B	Amycolatopsis tolypomycina
BGC0001863.1	0.50	RiPP, Terpene	bacillicn CER074	Bacillus mycoides
BGC0000286.1	0.49	Polyketide	viguiepinol	Streptomyces sp. KO-3988
BGC0001985.1	0.44	Other	pyrazomycin	Streptomyces candidus
BGC0000635.1	0.42	Terpene	carotenoid	Paracoccus sp. N81106
BGC0000642.1	0.42	Terpene	carotenoid	Enterobacteriaceae bacterium DC413
BGC0000877.1	0.41	Other	polyoxin A, polyoxin H	Streptomyces cacaoi subsp. asoensis
BGC0001080.1	0.41	Other (Phenazine)	endophenazine A, endophenazine B	Streptomyces anulatus
BGC0001776.1	0.40	Terpene	shearinine D	Penicillium janthinellum

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

NZ_KB904598.1 - Region 1 - RiPP-like

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Location: 193,644 - 214,582 nt. (total: 20,939 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001388.1	0.40	RiPP	gassericin E	Lactobacillus gasseri
BGC0000619.1	0.40	RiPP	gassericin T	Lactobacillus gasseri
BGC0001602.1	0.40	RiPP	gassericin-T	Lactobacillus gasseri
BGC0000617.1	0.32	RiPP	coagulin	Bacillus coagulans
BGC0000558.1	0.24	RiPP	sublancin 168	Bacillus subtilis subsp. subtilis str. 168
BGC0001862.1	0.21	RiPP	geocillicin	Aeribacillus pallidus
BGC0001930.1	0.21	RiPP	pallidocin	Aeribacillus pallidus
BGC0000554.1	0.21	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0000624.1	0.21	RiPP	salivaricin CRL1328 α peptide, salivaricin CRL1328 β peptide	Lactobacillus salivarius
BGC0001863.1	0.21	RiPP, Terpene	bacillicn CER074	Bacillus mycoides

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001388.1	0.72	RiPP	gassericin E	Lactobacillus gasseri
BGC0000619.1	0.72	RiPP	gassericin T	Lactobacillus gasseri
BGC0001602.1	0.72	RiPP	gassericin-T	Lactobacillus gasseri
BGC0000617.1	0.65	RiPP	coagulin	Bacillus coagulans
BGC0000558.1	0.57	RiPP	sublancin 168	Bacillus subtilis subsp. subtilis str. 168
BGC0001862.1	0.54	RiPP	geocillicin	Aeribacillus pallidus
BGC0001930.1	0.54	RiPP	pallidocin	Aeribacillus pallidus
BGC0000554.1	0.54	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0000624.1	0.54	RiPP	salivaricin CRL1328 α peptide, salivaricin CRL1328 β peptide	Lactobacillus salivarius
BGC0001863.1	0.54	RiPP, Terpene	bacillicn CER074	Bacillus mycoides

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

NZ_KB904599.1 - Region 1 - RRE-containing

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Location: 1 - 14,794 nt. (total: 14,794 nt) Show pHMM detection rules used

Region on contig edge.

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001222.1	0.16	RiPP	acidocin B	Lactobacillus acidophilus
BGC0000491.1	0.16	RiPP	gassericin A	Lactobacillus gasseri
BGC0001743.1	0.15	RiPP	plantaricyclin	Lactobacillus plantarum
BGC0000019.1	0.13	Polyketide	angolamycin	Streptomyces eurythermus
BGC0001120.1	0.13	NRP, Polyketide	burkholderic acid	Burkholderia thailandensis E264
BGC0000548.1	0.13	RiPP	salivaricin A	Streptococcus salivarius
BGC0000703.1	0.13	Saccharide	kanamycin	Streptomyces kanamyceticus
BGC0000243.1	0.13	Polyketide	macrotetrolide	Streptomyces griseus subsp. griseus
BGC0001484.1	0.13	Other	2'-chloropentostatin, 2'-amino-2'-deoxyadenosine	Actinomadura sp. ATCC 39365
BGC0000698.1	0.13	Saccharide	hygromycin A	Streptomyces hygroscopicus

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001222.1	0.46	RiPP	acidocin B	Lactobacillus acidophilus
BGC0000491.1	0.46	RiPP	gassericin A	Lactobacillus gasseri
BGC0001743.1	0.46	RiPP	plantaricyclin	Lactobacillus plantarum
BGC0000019.1	0.42	Polyketide	angolamycin	Streptomyces eurythermus
BGC0001120.1	0.42	NRP, Polyketide	burkholderic acid	Burkholderia thailandensis E264
BGC0000548.1	0.42	RiPP	salivaricin A	Streptococcus salivarius
BGC0000703.1	0.41	Saccharide	kanamycin	Streptomyces kanamyceticus
BGC0000243.1	0.41	Polyketide	macrotetrolide	Streptomyces griseus subsp. griseus
BGC0001484.1	0.41	Other	2'-chloropentostatin, 2'-amino-2'-deoxyadenosine	Actinomadura sp. ATCC 39365
BGC0000698.1	0.41	Saccharide	hygromycin A	Streptomyces hygroscopicus

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names