Select genomic region:
Overview
1.1
13.1
14.1

### Identified secondary metabolite regions using strictness 'relaxed'

NZ_KB904586.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1.1 | T3PKS | 245,586 | 282,663 |

NZ_KB904598.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 13.1 | RiPP-like | 193,644 | 214,582 |

NZ_KB904599.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 14.1 | RRE-containing | 1 | 14,794 |

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1.1 | T3PKS | 245,586 | 282,663 |
Region 13.1 | RiPP-like | 193,644 | 214,582 |
Region 14.1 | RRE-containing | 1 | 14,794 |

No secondary metabolite regions were found in these records:
  NZ_KB904587.1
  NZ_KB904588.1
  NZ_KB904589.1
  NZ_KB904590.1
  NZ_KB904591.1
  NZ_KB904592.1
  NZ_KB904593.1
  NZ_KB904594.1
  NZ_KB904595.1
  NZ_KB904596.1
  NZ_KB904597.1
  NZ_KB904600.1
  NZ_KB904601.1
  NZ_KB904602.1
  NZ_KB904603.1
  NZ_KB904604.1
  NZ_KB904605.1
  NZ_KB904606.1
  NZ_KB904607.1
  NZ_KB904608.1
  NZ_KB904609.1
  NZ_KB904610.1
  NZ_KB904611.1
  NZ_KB904612.1
  NZ_KB904613.1
  NZ_KB904614.1
  NZ_KB904615.1
  NZ_KB904616.1
  NZ_KB904617.1
  NZ_KB904618.1
  NZ_KB904619.1
  NZ_KB904620.1
  NZ_KB904621.1
  NZ_KB904622.1
  NZ_KB904623.1
  NZ_KB904624.1
  NZ_KB904625.1
  NZ_KB904626.1
  NZ_KB904627.1
  NZ_KB904628.1
  NZ_KB904629.1
  NZ_KB904630.1
  NZ_KB904631.1
  NZ_KB904632.1
  NZ_KB904633.1

Compact view
NZ_KB904586.1 - Region 1 - T3PKS
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 245,586 - 282,663 nt. (total: 37,078 nt) Show pHMM detection rules used
Region on contig edge.
T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
NRPS/PKS domains
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Detailed domain annotation
Shows NRPS- and PKS-related domains for each feature that contains them. Click on each domain for more information about the domain's location, consensus monomer prediction, and other details.
A glossary is available here.
Selected features only
Show module domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | T3PKS | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000255.1 |  | 0.23 | Polyketide | pederin | Uncultured bacterium
BGC0002007.1 |  | 0.20 | Terpene | atolypene A, atolypene B | Amycolatopsis tolypomycina
BGC0001863.1 |  | 0.19 | RiPP, Terpene | bacillicn CER074 | Bacillus mycoides
BGC0000286.1 |  | 0.17 | Polyketide | viguiepinol | Streptomyces sp. KO-3988
BGC0001985.1 |  | 0.14 | Other | pyrazomycin | Streptomyces candidus
BGC0000635.1 |  | 0.13 | Terpene | carotenoid | Paracoccus sp. N81106
BGC0000642.1 |  | 0.13 | Terpene | carotenoid | Enterobacteriaceae bacterium DC413
BGC0000877.1 |  | 0.13 | Other | polyoxin A, polyoxin H | Streptomyces cacaoi subsp. asoensis
BGC0001080.1 |  | 0.13 | Other (Phenazine) | endophenazine A, endophenazine B | Streptomyces anulatus
BGC0001776.1 |  | 0.12 | Terpene | shearinine D | Penicillium janthinellum

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000255.1 |  | 0.56 | Polyketide | pederin | Uncultured bacterium
BGC0002007.1 |  | 0.52 | Terpene | atolypene A, atolypene B | Amycolatopsis tolypomycina
BGC0001863.1 |  | 0.50 | RiPP, Terpene | bacillicn CER074 | Bacillus mycoides
BGC0000286.1 |  | 0.49 | Polyketide | viguiepinol | Streptomyces sp. KO-3988
BGC0001985.1 |  | 0.44 | Other | pyrazomycin | Streptomyces candidus
BGC0000635.1 |  | 0.42 | Terpene | carotenoid | Paracoccus sp. N81106
BGC0000642.1 |  | 0.42 | Terpene | carotenoid | Enterobacteriaceae bacterium DC413
BGC0000877.1 |  | 0.41 | Other | polyoxin A, polyoxin H | Streptomyces cacaoi subsp. asoensis
BGC0001080.1 |  | 0.41 | Other (Phenazine) | endophenazine A, endophenazine B | Streptomyces anulatus
BGC0001776.1 |  | 0.40 | Terpene | shearinine D | Penicillium janthinellum

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_KB904598.1 - Region 1 - RiPP-like
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 193,644 - 214,582 nt. (total: 20,939 nt) Show pHMM detection rules used
RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | RiPP-like | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001388.1 |  | 0.40 | RiPP | gassericin E | Lactobacillus gasseri
BGC0000619.1 |  | 0.40 | RiPP | gassericin T | Lactobacillus gasseri
BGC0001602.1 |  | 0.40 | RiPP | gassericin-T | Lactobacillus gasseri
BGC0000617.1 |  | 0.32 | RiPP | coagulin | Bacillus coagulans
BGC0000558.1 |  | 0.24 | RiPP | sublancin 168 | Bacillus subtilis subsp. subtilis str. 168
BGC0001862.1 |  | 0.21 | RiPP | geocillicin | Aeribacillus pallidus
BGC0001930.1 |  | 0.21 | RiPP | pallidocin | Aeribacillus pallidus
BGC0000554.1 |  | 0.21 | RiPP | SRO15-3108 | Streptomyces filamentosus NRRL 15998
BGC0000624.1 |  | 0.21 | RiPP | salivaricin CRL1328 α peptide, salivaricin CRL1328 β peptide | Lactobacillus salivarius
BGC0001863.1 |  | 0.21 | RiPP, Terpene | bacillicn CER074 | Bacillus mycoides

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001388.1 |  | 0.72 | RiPP | gassericin E | Lactobacillus gasseri
BGC0000619.1 |  | 0.72 | RiPP | gassericin T | Lactobacillus gasseri
BGC0001602.1 |  | 0.72 | RiPP | gassericin-T | Lactobacillus gasseri
BGC0000617.1 |  | 0.65 | RiPP | coagulin | Bacillus coagulans
BGC0000558.1 |  | 0.57 | RiPP | sublancin 168 | Bacillus subtilis subsp. subtilis str. 168
BGC0001862.1 |  | 0.54 | RiPP | geocillicin | Aeribacillus pallidus
BGC0001930.1 |  | 0.54 | RiPP | pallidocin | Aeribacillus pallidus
BGC0000554.1 |  | 0.54 | RiPP | SRO15-3108 | Streptomyces filamentosus NRRL 15998
BGC0000624.1 |  | 0.54 | RiPP | salivaricin CRL1328 α peptide, salivaricin CRL1328 β peptide | Lactobacillus salivarius
BGC0001863.1 |  | 0.54 | RiPP, Terpene | bacillicn CER074 | Bacillus mycoides

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_KB904599.1 - Region 1 - RRE-containing
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1 - 14,794 nt. (total: 14,794 nt) Show pHMM detection rules used
Region on contig edge.
RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | RRE-containing | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001222.1 |  | 0.16 | RiPP | acidocin B | Lactobacillus acidophilus
BGC0000491.1 |  | 0.16 | RiPP | gassericin A | Lactobacillus gasseri
BGC0001743.1 |  | 0.15 | RiPP | plantaricyclin | Lactobacillus plantarum
BGC0000019.1 |  | 0.13 | Polyketide | angolamycin | Streptomyces eurythermus
BGC0001120.1 |  | 0.13 | NRP, Polyketide | burkholderic acid | Burkholderia thailandensis E264
BGC0000548.1 |  | 0.13 | RiPP | salivaricin A | Streptococcus salivarius
BGC0000703.1 |  | 0.13 | Saccharide | kanamycin | Streptomyces kanamyceticus
BGC0000243.1 |  | 0.13 | Polyketide | macrotetrolide | Streptomyces griseus subsp. griseus
BGC0001484.1 |  | 0.13 | Other | 2'-chloropentostatin, 2'-amino-2'-deoxyadenosine | Actinomadura sp. ATCC 39365
BGC0000698.1 |  | 0.13 | Saccharide | hygromycin A | Streptomyces hygroscopicus

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001222.1 |  | 0.46 | RiPP | acidocin B | Lactobacillus acidophilus
BGC0000491.1 |  | 0.46 | RiPP | gassericin A | Lactobacillus gasseri
BGC0001743.1 |  | 0.46 | RiPP | plantaricyclin | Lactobacillus plantarum
BGC0000019.1 |  | 0.42 | Polyketide | angolamycin | Streptomyces eurythermus
BGC0001120.1 |  | 0.42 | NRP, Polyketide | burkholderic acid | Burkholderia thailandensis E264
BGC0000548.1 |  | 0.42 | RiPP | salivaricin A | Streptococcus salivarius
BGC0000703.1 |  | 0.41 | Saccharide | kanamycin | Streptomyces kanamyceticus
BGC0000243.1 |  | 0.41 | Polyketide | macrotetrolide | Streptomyces griseus subsp. griseus
BGC0001484.1 |  | 0.41 | Other | 2'-chloropentostatin, 2'-amino-2'-deoxyadenosine | Actinomadura sp. ATCC 39365
BGC0000698.1 |  | 0.41 | Saccharide | hygromycin A | Streptomyces hygroscopicus

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names