GCF_000018325.1_ASM1832v1_genomic - 4 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NC_009922.1

Region	Type	From	To
Region 1	cyclic-lactone-autoinducer	265,624	283,120
Region 2	cyclic-lactone-autoinducer	472,905	492,638
Region 3	ranthipeptide	1,809,541	1,830,905
Region 4	cyclic-lactone-autoinducer	2,383,898	2,404,604

NC_009922.1 - Region 1 - cyclic-lactone-autoinducer

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Location: 265,624 - 283,120 nt. (total: 17,497 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000488.1	0.17	RiPP	circularin A	Clostridium beijerinckii
BGC0000294.1	0.16	NRP	acinetobactin	Acinetobacter baumannii
BGC0000617.1	0.16	RiPP	coagulin	Bacillus coagulans
BGC0000928.1	0.15	Other	T3 toxin	Cylindrospermopsis raciborskii T3
BGC0000188.1	0.15	Alkaloid	saxitoxin, neosaxitoxin, decarbamoylsaxitoxin, gonyautoxin 3, gonyautoxin 2	Cylindrospermopsis raciborskii T3
BGC0000571.1	0.15	RiPP	burhizin	Paraburkholderia rhizoxinica HKI 454
BGC0000554.1	0.15	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0000883.1	0.15	Other	arginomycin	Streptomyces arginensis
BGC0000584.1	0.15	RiPP	colicin V	Escherichia coli
BGC0002009.1	0.15	Polyketide	kanglemycin A, kanglemycin V1, kanglemycin V2	Amycolatopsis vancoresmycina

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000488.1	0.48	RiPP	circularin A	Clostridium beijerinckii
BGC0000294.1	0.47	NRP	acinetobactin	Acinetobacter baumannii
BGC0000617.1	0.46	RiPP	coagulin	Bacillus coagulans
BGC0000928.1	0.46	Other	T3 toxin	Cylindrospermopsis raciborskii T3
BGC0000188.1	0.46	Alkaloid	saxitoxin, neosaxitoxin, decarbamoylsaxitoxin, gonyautoxin 3, gonyautoxin 2	Cylindrospermopsis raciborskii T3
BGC0000571.1	0.46	RiPP	burhizin	Paraburkholderia rhizoxinica HKI 454
BGC0000554.1	0.45	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0000883.1	0.45	Other	arginomycin	Streptomyces arginensis
BGC0000584.1	0.45	RiPP	colicin V	Escherichia coli
BGC0002009.1	0.45	Polyketide	kanglemycin A, kanglemycin V1, kanglemycin V2	Amycolatopsis vancoresmycina

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NC_009922.1 - Region 2 - cyclic-lactone-autoinducer

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Location: 472,905 - 492,638 nt. (total: 19,734 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	cyclic-lactone-autoinducer	Similarity score	Type	Compound(s)	Organism
BGC0001122.1		0.05	NRP, Polyketide	dihydroisoflavipucine, isoflavipucine	Aspergillus terreus NIH2624
BGC0000495.1		0.04	RiPP	actagardine	Actinoplanes garbadinensis

Reference	Aggregated	Similarity score	Type	Compound(s)	Organism
BGC0001122.1		0.24	NRP, Polyketide	dihydroisoflavipucine, isoflavipucine	Aspergillus terreus NIH2624
BGC0000495.1		0.19	RiPP	actagardine	Actinoplanes garbadinensis

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NC_009922.1 - Region 3 - ranthipeptide

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Location: 1,809,541 - 1,830,905 nt. (total: 21,365 nt) Show pHMM detection rules used

ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or YcaO or TIGR03882)))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001387.1	0.18	Other	nucleocidin	Streptomyces calvus
BGC0000599.1	0.14	RiPP	thuricin CD α, thuricin CD β	Bacillus thuringiensis
BGC0001887.1	0.13	RiPP	huazacin	Bacillus thuringiensis serovar huazhongensis BGSC 4BD1
BGC0000684.1	0.11	Terpene	asperthecin	Aspergillus nidulans FGSC A4
BGC0001144.1	0.08	Polyketide	neosartoricin B	Trichophyton tonsurans CBS 112818
BGC0001860.1	0.07	RiPP	thiomuracin	Thermobispora bispora DSM 43833
BGC0000613.1	0.07	RiPP	thiomuracin A	Nonomuraea sp. Bp3714-39
BGC0000604.1	0.07	RiPP	GE2270A	Nonomuraea sp. WU8817
BGC0001591.1	0.07	Other	fatty acid enol ester	uncultured bacterium CSLC2
BGC0001688.1	0.07	Other	N-tetradecanoyl tyrosine	uncultured bacterium CSLC2

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001387.1	0.49	Other	nucleocidin	Streptomyces calvus
BGC0000599.1	0.43	RiPP	thuricin CD α, thuricin CD β	Bacillus thuringiensis
BGC0001887.1	0.42	RiPP	huazacin	Bacillus thuringiensis serovar huazhongensis BGSC 4BD1
BGC0000684.1	0.37	Terpene	asperthecin	Aspergillus nidulans FGSC A4
BGC0001144.1	0.31	Polyketide	neosartoricin B	Trichophyton tonsurans CBS 112818
BGC0001860.1	0.29	RiPP	thiomuracin	Thermobispora bispora DSM 43833
BGC0000613.1	0.28	RiPP	thiomuracin A	Nonomuraea sp. Bp3714-39
BGC0000604.1	0.28	RiPP	GE2270A	Nonomuraea sp. WU8817
BGC0001591.1	0.28	Other	fatty acid enol ester	uncultured bacterium CSLC2
BGC0001688.1	0.28	Other	N-tetradecanoyl tyrosine	uncultured bacterium CSLC2

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

NC_009922.1 - Region 4 - cyclic-lactone-autoinducer

Download region GenBank file

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Location: 2,383,898 - 2,404,604 nt. (total: 20,707 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000488.1	0.14	RiPP	circularin A	Clostridium beijerinckii
BGC0000466.1	0.13	NRP	yatakemycin	Streptomyces sp. TP-A2060
BGC0001540.1	0.13	Other	CC-1065	Streptomyces zelensis
BGC0000486.1	0.08	RiPP	butyrivibriocin AR10	Butyrivibrio fibrisolvens
BGC0001536.1	0.06	NRP	brevicidine	Brevibacillus laterosporus
BGC0000132.1	0.04	Polyketide	pyrrolomycin	Streptomyces sp. UC 11065
BGC0001555.1	0.04	RiPP	colicin V	Escherichia coli chi7122
BGC0001088.1	0.04	NRP, Polyketide	albicidin	Xanthomonas albilineans
BGC0000379.1	0.03	NRP	glycinocin A	Streptomyces viridochromogenes

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000488.1	0.43	RiPP	circularin A	Clostridium beijerinckii
BGC0000466.1	0.42	NRP	yatakemycin	Streptomyces sp. TP-A2060
BGC0001540.1	0.41	Other	CC-1065	Streptomyces zelensis
BGC0000486.1	0.32	RiPP	butyrivibriocin AR10	Butyrivibrio fibrisolvens
BGC0001536.1	0.24	NRP	brevicidine	Brevibacillus laterosporus
BGC0000132.1	0.20	Polyketide	pyrrolomycin	Streptomyces sp. UC 11065
BGC0001555.1	0.19	RiPP	colicin V	Escherichia coli chi7122
BGC0001088.1	0.18	NRP, Polyketide	albicidin	Xanthomonas albilineans
BGC0000379.1	0.15	NRP	glycinocin A	Streptomyces viridochromogenes

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names