GCF_000439105.1_ASM43910v1_genomic - 4 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NZ_KE392228.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 1.1	RRE-containing	41,438	60,786
Region 1.2	RRE-containing	128,572	153,399

NZ_AUUB01000014 (original name was: NZ_AUUB01000014.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 3.1	ranthipeptide	140,005	161,662
Region 3.2	cyclic-lactone-autoinducer	169,503	190,319

Region	Type	From	To	Similarity
Region 1.1	RRE-containing	41,438	60,786
Region 1.2	RRE-containing	128,572	153,399
Region 3.1	ranthipeptide	140,005	161,662
Region 3.2	cyclic-lactone-autoinducer	169,503	190,319

No secondary metabolite regions were found in these records:: NZ_KE392229.1; NZ_AUUB01000015 (original name was: NZ_AUUB01000015.1); NZ_AUUB01000016 (original name was: NZ_AUUB01000016.1); NZ_AUUB01000017 (original name was: NZ_AUUB01000017.1); NZ_AUUB01000018 (original name was: NZ_AUUB01000018.1); NZ_AUUB01000019 (original name was: NZ_AUUB01000019.1); NZ_AUUB01000020 (original name was: NZ_AUUB01000020.1); NZ_AUUB01000001 (original name was: NZ_AUUB01000001.1); NZ_AUUB01000002 (original name was: NZ_AUUB01000002.1); NZ_AUUB01000003 (original name was: NZ_AUUB01000003.1); NZ_AUUB01000004 (original name was: NZ_AUUB01000004.1); NZ_AUUB01000005 (original name was: NZ_AUUB01000005.1); NZ_AUUB01000006 (original name was: NZ_AUUB01000006.1); NZ_KE392230.1; NZ_AUUB01000009 (original name was: NZ_AUUB01000009.1)

Compact view

NZ_KE392228.1 - Region 1 - RRE-containing

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Location: 41,438 - 60,786 nt. (total: 19,349 nt) Show pHMM detection rules used

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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Gene details

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MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001779.1	0.23	RiPP	siamycin	Streptomyces nodosus
BGC0000519.1	0.16	RiPP	labyrinthopeptin A2, labyrinthopeptin A1, labyrinthopeptin A3	Actinomadura namibiensis
BGC0000551.1	0.16	RiPP	SapB	Streptomyces coelicolor A3(2)
BGC0000496.1	0.16	RiPP	AmfS	Streptomyces griseus subsp. griseus NBRC 13350
BGC0000501.1	0.16	RiPP	catenulipeptin	Catenulispora acidiphila DSM 44928
BGC0001210.1	0.16	RiPP	pseudomycoicidin	Bacillus pseudomycoides DSM 12442
BGC0000938.1	0.16	Other (Aminocoumarin)	fosfomycin	Streptomyces fradiae
BGC0000626.1	0.16	RiPP	thuricin	Bacillus thuringiensis
BGC0000764.1	0.16	Saccharide	exopolysaccharide	Lactococcus lactis
BGC0000487.1	0.16	RiPP	carnocyclin	Carnobacterium maltaromaticum

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001779.1	0.56	RiPP	siamycin	Streptomyces nodosus
BGC0000519.1	0.47	RiPP	labyrinthopeptin A2, labyrinthopeptin A1, labyrinthopeptin A3	Actinomadura namibiensis
BGC0000551.1	0.47	RiPP	SapB	Streptomyces coelicolor A3(2)
BGC0000496.1	0.47	RiPP	AmfS	Streptomyces griseus subsp. griseus NBRC 13350
BGC0000501.1	0.47	RiPP	catenulipeptin	Catenulispora acidiphila DSM 44928
BGC0001210.1	0.47	RiPP	pseudomycoicidin	Bacillus pseudomycoides DSM 12442
BGC0000938.1	0.47	Other (Aminocoumarin)	fosfomycin	Streptomyces fradiae
BGC0000626.1	0.46	RiPP	thuricin	Bacillus thuringiensis
BGC0000764.1	0.46	Saccharide	exopolysaccharide	Lactococcus lactis
BGC0000487.1	0.46	RiPP	carnocyclin	Carnobacterium maltaromaticum

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NZ_KE392228.1 - Region 2 - RRE-containing

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Location: 128,572 - 153,399 nt. (total: 24,828 nt) Show pHMM detection rules used

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001655.1	0.17	RiPP	LP2006	Nocardiopsis alba DSM 43377
BGC0001863.1	0.16	RiPP, Terpene	bacillicn CER074	Bacillus mycoides
BGC0000554.1	0.16	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0001586.1	0.16	Saccharide	EPS273	Pseudomonas stutzeri
BGC0001222.1	0.16	RiPP	acidocin B	Lactobacillus acidophilus
BGC0000504.1	0.16	RiPP	cytolysin ClyLl, cytolysin ClyLs	Plasmid pAD1
BGC0000617.1	0.16	RiPP	coagulin	Bacillus coagulans
BGC0000491.1	0.16	RiPP	gassericin A	Lactobacillus gasseri
BGC0000500.1	0.16	RiPP	carnolysin A1, carnolysin A2	Carnobacterium maltaromaticum
BGC0000543.1	0.16	RiPP	pep5	Staphylococcus epidermidis

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001655.1	0.48	RiPP	LP2006	Nocardiopsis alba DSM 43377
BGC0001863.1	0.47	RiPP, Terpene	bacillicn CER074	Bacillus mycoides
BGC0000554.1	0.47	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0001586.1	0.47	Saccharide	EPS273	Pseudomonas stutzeri
BGC0001222.1	0.47	RiPP	acidocin B	Lactobacillus acidophilus
BGC0000504.1	0.46	RiPP	cytolysin ClyLl, cytolysin ClyLs	Plasmid pAD1
BGC0000617.1	0.46	RiPP	coagulin	Bacillus coagulans
BGC0000491.1	0.46	RiPP	gassericin A	Lactobacillus gasseri
BGC0000500.1	0.46	RiPP	carnolysin A1, carnolysin A2	Carnobacterium maltaromaticum
BGC0000543.1	0.46	RiPP	pep5	Staphylococcus epidermidis

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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c00003_NZ_AUUB.. - Region 1 - ranthipeptide

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Location: 140,005 - 161,662 nt. (total: 21,658 nt) Show pHMM detection rules used

ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or YcaO or TIGR03882)))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001387.1	0.17	Other	nucleocidin	Streptomyces calvus
BGC0001887.1	0.14	RiPP	huazacin	Bacillus thuringiensis serovar huazhongensis BGSC 4BD1
BGC0001935.1	0.12	Other	3,7-dihydroxytropolone	Streptomyces cyaneofuscatus
BGC0001487.1	0.12	Other	3,7-dihydroxytropolone	Streptomyces cyaneofuscatus
BGC0000695.1	0.11	Saccharide	fortimicin	Micromonospora olivasterospora
BGC0001860.1	0.09	RiPP	thiomuracin	Thermobispora bispora DSM 43833
BGC0000613.1	0.09	RiPP	thiomuracin A	Nonomuraea sp. Bp3714-39
BGC0000604.1	0.08	RiPP	GE2270A	Nonomuraea sp. WU8817
BGC0001155.1	0.07	RiPP	GE2270	Planobispora rosea
BGC0001591.1	0.07	Other	fatty acid enol ester	uncultured bacterium CSLC2

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001387.1	0.49	Other	nucleocidin	Streptomyces calvus
BGC0001887.1	0.44	RiPP	huazacin	Bacillus thuringiensis serovar huazhongensis BGSC 4BD1
BGC0001935.1	0.39	Other	3,7-dihydroxytropolone	Streptomyces cyaneofuscatus
BGC0001487.1	0.39	Other	3,7-dihydroxytropolone	Streptomyces cyaneofuscatus
BGC0000695.1	0.37	Saccharide	fortimicin	Micromonospora olivasterospora
BGC0001860.1	0.33	RiPP	thiomuracin	Thermobispora bispora DSM 43833
BGC0000613.1	0.33	RiPP	thiomuracin A	Nonomuraea sp. Bp3714-39
BGC0000604.1	0.31	RiPP	GE2270A	Nonomuraea sp. WU8817
BGC0001155.1	0.30	RiPP	GE2270	Planobispora rosea
BGC0001591.1	0.28	Other	fatty acid enol ester	uncultured bacterium CSLC2

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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c00003_NZ_AUUB.. - Region 2 - cyclic-lactone-autoinducer

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Location: 169,503 - 190,319 nt. (total: 20,817 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001859.1	0.13	Other (Phosphonate)	fosfomycin	Pseudomonas syringae
BGC0000469.1	0.08	RiPP	bottromycin A2	Streptomyces sp. BC16019
BGC0001686.1	0.07	NRP	N-octanoyl-Met-Phe-H	Clostridium sp. CAG:567
BGC0001941.1	0.07	NRP, Polyketide	fulvuthiacene A, fulvuthiacene B	Myxococcus fulvus
BGC0001890.1	0.07	NRP	amphi-enterobactin 1, amphi-enterobactin 2, amphi-enterobactin 3, amphi-enterobactin 4	Vibrio campbellii ATCC BAA-1116
BGC0001945.1	0.05	NRP	chloromyxamide	Myxococcus sp.

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001859.1	0.42	Other (Phosphonate)	fosfomycin	Pseudomonas syringae
BGC0000469.1	0.30	RiPP	bottromycin A2	Streptomyces sp. BC16019
BGC0001686.1	0.29	NRP	N-octanoyl-Met-Phe-H	Clostridium sp. CAG:567
BGC0001941.1	0.29	NRP, Polyketide	fulvuthiacene A, fulvuthiacene B	Myxococcus fulvus
BGC0001890.1	0.28	NRP	amphi-enterobactin 1, amphi-enterobactin 2, amphi-enterobactin 3, amphi-enterobactin 4	Vibrio campbellii ATCC BAA-1116
BGC0001945.1	0.21	NRP	chloromyxamide	Myxococcus sp.

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names