GCF_900461315.1_49699_G01_genomic - 4 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NZ_UFXF01000001 (original name was: NZ_UFXF01000001.1)

Region	Type	From	To
Region 3.1	cyclic-lactone-autoinducer	1,349,798	1,368,413
Region 3.2	cyclic-lactone-autoinducer	2,469,980	2,489,971
Region 3.3	ranthipeptide	4,572,260	4,593,935
Region 3.4	cyclic-lactone-autoinducer	4,688,578	4,709,347

Region	Type	From	To	Similarity
Region 3.1	cyclic-lactone-autoinducer	1,349,798	1,368,413
Region 3.2	cyclic-lactone-autoinducer	2,469,980	2,489,971
Region 3.3	ranthipeptide	4,572,260	4,593,935
Region 3.4	cyclic-lactone-autoinducer	4,688,578	4,709,347

No secondary metabolite regions were found in these records:: NZ_UFXF01000003 (original name was: NZ_UFXF01000003.1); NZ_UFXF01000002 (original name was: NZ_UFXF01000002.1)

Compact view

c00003_NZ_UFXF.. - Region 1 - cyclic-lactone-autoinducer

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Location: 1,349,798 - 1,368,413 nt. (total: 18,616 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000488.1	0.25	RiPP	circularin A	Clostridium beijerinckii
BGC0001521.1	0.20	NRP	auriculamide	Herpetosiphon aurantiacus DSM 785
BGC0000513.1	0.20	RiPP	Ery-9, Ery-6, Ery-8, Ery-7, Ery-5, Ery-4, Ery-3	Saccharopolyspora erythraea NRRL 2338
BGC0001839.1	0.19	Terpene	squalestatin S1	Aspergillus sp. Z5
BGC0000554.1	0.17	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0000504.1	0.16	RiPP	cytolysin ClyLl, cytolysin ClyLs	Plasmid pAD1
BGC0001526.1	0.16	Other	bartolosides E, bartolosides F, bartolosides G, bartolosides H, bartolosides I, bartolosides J, bartolosides K	Synechocystis salina LEGE 06099
BGC0001210.1	0.16	RiPP	pseudomycoicidin	Bacillus pseudomycoides DSM 12442
BGC0000487.1	0.16	RiPP	carnocyclin	Carnobacterium maltaromaticum
BGC0000616.1	0.16	RiPP	amylocyclicin	Bacillus velezensis FZB42

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000488.1	0.58	RiPP	circularin A	Clostridium beijerinckii
BGC0001521.1	0.53	NRP	auriculamide	Herpetosiphon aurantiacus DSM 785
BGC0000513.1	0.52	RiPP	Ery-9, Ery-6, Ery-8, Ery-7, Ery-5, Ery-4, Ery-3	Saccharopolyspora erythraea NRRL 2338
BGC0001839.1	0.51	Terpene	squalestatin S1	Aspergillus sp. Z5
BGC0000554.1	0.48	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0000504.1	0.47	RiPP	cytolysin ClyLl, cytolysin ClyLs	Plasmid pAD1
BGC0001526.1	0.47	Other	bartolosides E, bartolosides F, bartolosides G, bartolosides H, bartolosides I, bartolosides J, bartolosides K	Synechocystis salina LEGE 06099
BGC0001210.1	0.47	RiPP	pseudomycoicidin	Bacillus pseudomycoides DSM 12442
BGC0000487.1	0.47	RiPP	carnocyclin	Carnobacterium maltaromaticum
BGC0000616.1	0.47	RiPP	amylocyclicin	Bacillus velezensis FZB42

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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c00003_NZ_UFXF.. - Region 2 - cyclic-lactone-autoinducer

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Location: 2,469,980 - 2,489,971 nt. (total: 19,992 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000487.1	0.16	RiPP	carnocyclin	Carnobacterium maltaromaticum
BGC0000498.1	0.16	RiPP	bovicin HJ50	Streptococcus equinus
BGC0000561.1	0.16	RiPP	thermophilin 1277	Streptococcus thermophilus
BGC0000504.1	0.16	RiPP	cytolysin ClyLl, cytolysin ClyLs	Plasmid pAD1
BGC0000489.1	0.16	RiPP	enterocin AS-48	Enterococcus faecalis
BGC0000488.1	0.16	RiPP	circularin A	Clostridium beijerinckii
BGC0000519.1	0.15	RiPP	labyrinthopeptin A2, labyrinthopeptin A1, labyrinthopeptin A3	Actinomadura namibiensis
BGC0000539.1	0.15	RiPP	nukacin ISK-1	Staphylococcus warneri
BGC0000496.1	0.15	RiPP	AmfS	Streptomyces griseus subsp. griseus NBRC 13350
BGC0000938.1	0.15	Other (Aminocoumarin)	fosfomycin	Streptomyces fradiae

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000487.1	0.47	RiPP	carnocyclin	Carnobacterium maltaromaticum
BGC0000498.1	0.47	RiPP	bovicin HJ50	Streptococcus equinus
BGC0000561.1	0.47	RiPP	thermophilin 1277	Streptococcus thermophilus
BGC0000504.1	0.46	RiPP	cytolysin ClyLl, cytolysin ClyLs	Plasmid pAD1
BGC0000489.1	0.46	RiPP	enterocin AS-48	Enterococcus faecalis
BGC0000488.1	0.46	RiPP	circularin A	Clostridium beijerinckii
BGC0000519.1	0.46	RiPP	labyrinthopeptin A2, labyrinthopeptin A1, labyrinthopeptin A3	Actinomadura namibiensis
BGC0000539.1	0.45	RiPP	nukacin ISK-1	Staphylococcus warneri
BGC0000496.1	0.45	RiPP	AmfS	Streptomyces griseus subsp. griseus NBRC 13350
BGC0000938.1	0.45	Other (Aminocoumarin)	fosfomycin	Streptomyces fradiae

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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c00003_NZ_UFXF.. - Region 3 - ranthipeptide

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Location: 4,572,260 - 4,593,935 nt. (total: 21,676 nt) Show pHMM detection rules used

ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or YcaO or TIGR03882)))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000231.1	0.17	Polyketide	griseusin	Streptomyces griseus
BGC0001987.1	0.15	Polyketide	koreenceine A, koreenceine B, koreenceine C, koreenceine D	Pseudomonas koreensis
BGC0000207.1	0.15	Polyketide	chartreusin	Streptomyces chartreusis
BGC0001917.1	0.15	Polyketide	5-alkyl-1,2,3,4-tetrahydroquinolines, streptoaminals	Streptomyces nigrescens
BGC0000228.1	0.15	Polyketide	granaticin	Streptomyces violaceoruber
BGC0001605.1	0.15	Terpene	gibberellin	Sinorhizobium fredii NGR234
BGC0000698.1	0.14	Saccharide	hygromycin A	Streptomyces hygroscopicus
BGC0000010.1	0.14	Polyketide	aflatoxin	Aspergillus flavus
BGC0001810.1	0.14	Polyketide	trehangelin	Polymorphospora rubra
BGC0001197.1	0.14	Polyketide	frankiamicin	Frankia sp. EAN1pec

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000231.1	0.49	Polyketide	griseusin	Streptomyces griseus
BGC0001987.1	0.46	Polyketide	koreenceine A, koreenceine B, koreenceine C, koreenceine D	Pseudomonas koreensis
BGC0000207.1	0.46	Polyketide	chartreusin	Streptomyces chartreusis
BGC0001917.1	0.45	Polyketide	5-alkyl-1,2,3,4-tetrahydroquinolines, streptoaminals	Streptomyces nigrescens
BGC0000228.1	0.45	Polyketide	granaticin	Streptomyces violaceoruber
BGC0001605.1	0.44	Terpene	gibberellin	Sinorhizobium fredii NGR234
BGC0000698.1	0.44	Saccharide	hygromycin A	Streptomyces hygroscopicus
BGC0000010.1	0.44	Polyketide	aflatoxin	Aspergillus flavus
BGC0001810.1	0.44	Polyketide	trehangelin	Polymorphospora rubra
BGC0001197.1	0.44	Polyketide	frankiamicin	Frankia sp. EAN1pec

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

c00003_NZ_UFXF.. - Region 4 - cyclic-lactone-autoinducer

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Location: 4,688,578 - 4,709,347 nt. (total: 20,770 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001410.1	0.23	Saccharide	polysaccharide A	Bacteroides fragilis
BGC0000488.1	0.22	RiPP	circularin A	Clostridium beijerinckii
BGC0001291.1	0.22	RiPP	enterocin NKR-5-3B	Enterococcus faecium
BGC0000767.1	0.21	Saccharide	exopolysaccharide	Lactobacillus johnsonii
BGC0000765.1	0.21	Saccharide	exopolysaccharide	Lactobacillus johnsonii
BGC0001441.1	0.21	Other	belactosin A, belactosin C	Streptomyces sp.
BGC0001586.1	0.19	Saccharide	EPS273	Pseudomonas stutzeri
BGC0000938.1	0.18	Other (Aminocoumarin)	fosfomycin	Streptomyces fradiae
BGC0001440.1	0.18	Other	cystargolide A, cystargolide B	Kitasatospora cystarginea
BGC0000711.1	0.18	Saccharide	neomycin	Streptomyces fradiae

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001410.1	0.56	Saccharide	polysaccharide A	Bacteroides fragilis
BGC0000488.1	0.55	RiPP	circularin A	Clostridium beijerinckii
BGC0001291.1	0.55	RiPP	enterocin NKR-5-3B	Enterococcus faecium
BGC0000767.1	0.54	Saccharide	exopolysaccharide	Lactobacillus johnsonii
BGC0000765.1	0.54	Saccharide	exopolysaccharide	Lactobacillus johnsonii
BGC0001441.1	0.54	Other	belactosin A, belactosin C	Streptomyces sp.
BGC0001586.1	0.51	Saccharide	EPS273	Pseudomonas stutzeri
BGC0000938.1	0.50	Other (Aminocoumarin)	fosfomycin	Streptomyces fradiae
BGC0001440.1	0.50	Other	cystargolide A, cystargolide B	Kitasatospora cystarginea
BGC0000711.1	0.50	Saccharide	neomycin	Streptomyces fradiae

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names