GCF_000424025.1_ASM42402v1_genomic - 3 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NZ_AUJC01000001 (original name was: NZ_AUJC01000001.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 1.1	cyclic-lactone-autoinducer	348,711	369,265

NZ_KE384122.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 2.1	ranthipeptide	32,466	54,035

NZ_AUJC01000010 (original name was: NZ_AUJC01000010.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 9.1	cyclic-lactone-autoinducer	14,594	35,211

Region	Type	From	To	Similarity
Region 1.1	cyclic-lactone-autoinducer	348,711	369,265
Region 2.1	ranthipeptide	32,466	54,035
Region 9.1	cyclic-lactone-autoinducer	14,594	35,211

No secondary metabolite regions were found in these records:: NZ_AUJC01000004 (original name was: NZ_AUJC01000004.1); NZ_AUJC01000005 (original name was: NZ_AUJC01000005.1); NZ_AUJC01000006 (original name was: NZ_AUJC01000006.1); NZ_AUJC01000007 (original name was: NZ_AUJC01000007.1); NZ_AUJC01000008 (original name was: NZ_AUJC01000008.1); NZ_AUJC01000009 (original name was: NZ_AUJC01000009.1); NZ_AUJC01000011 (original name was: NZ_AUJC01000011.1); NZ_KE384123.1; NZ_AUJC01000014 (original name was: NZ_AUJC01000014.1); NZ_AUJC01000015 (original name was: NZ_AUJC01000015.1); NZ_AUJC01000016 (original name was: NZ_AUJC01000016.1); NZ_AUJC01000017 (original name was: NZ_AUJC01000017.1); NZ_AUJC01000018 (original name was: NZ_AUJC01000018.1); NZ_AUJC01000019 (original name was: NZ_AUJC01000019.1); NZ_AUJC01000020 (original name was: NZ_AUJC01000020.1); NZ_AUJC01000021 (original name was: NZ_AUJC01000021.1); NZ_AUJC01000022 (original name was: NZ_AUJC01000022.1); NZ_AUJC01000023 (original name was: NZ_AUJC01000023.1); NZ_AUJC01000024 (original name was: NZ_AUJC01000024.1); NZ_AUJC01000025 (original name was: NZ_AUJC01000025.1); NZ_AUJC01000026 (original name was: NZ_AUJC01000026.1); NZ_AUJC01000027 (original name was: NZ_AUJC01000027.1); NZ_AUJC01000028 (original name was: NZ_AUJC01000028.1); NZ_AUJC01000029 (original name was: NZ_AUJC01000029.1); NZ_AUJC01000030 (original name was: NZ_AUJC01000030.1); NZ_AUJC01000031 (original name was: NZ_AUJC01000031.1); NZ_AUJC01000032 (original name was: NZ_AUJC01000032.1)

Compact view

c00001_NZ_AUJC.. - Region 1 - cyclic-lactone-autoinducer

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Location: 348,711 - 369,265 nt. (total: 20,555 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000899.1	0.13	Other	desosamine	Streptomyces narbonensis
BGC0000898.1	0.13	Saccharide	desosamine	Streptomyces venezuelae
BGC0001789.1	0.09	RiPP	suicin 90-1330	Streptococcus suis
BGC0000511.1	0.09	RiPP	ericin S	Bacillus subtilis
BGC0001093.1	0.06	NRP, Polyketide	disorazol A	Sorangium cellulosum
BGC0001657.1	0.06	NRP	lysocin	Lysobacter sp. RH2180-5
BGC0000045.1	0.05	Polyketide	dehydrocurvularin	Aspergillus terreus
BGC0000433.1	0.04	NRP	surfactin	Bacillus velezensis FZB42
BGC0001543.1	0.04	Polyketide	chejuenolide A, chejuenolide B	Hahella chejuensis
BGC0000035.1	0.04	Polyketide	chalcomycin A	Streptomyces bikiniensis

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000899.1	0.42	Other	desosamine	Streptomyces narbonensis
BGC0000898.1	0.42	Saccharide	desosamine	Streptomyces venezuelae
BGC0001789.1	0.33	RiPP	suicin 90-1330	Streptococcus suis
BGC0000511.1	0.33	RiPP	ericin S	Bacillus subtilis
BGC0001093.1	0.27	NRP, Polyketide	disorazol A	Sorangium cellulosum
BGC0001657.1	0.25	NRP	lysocin	Lysobacter sp. RH2180-5
BGC0000045.1	0.21	Polyketide	dehydrocurvularin	Aspergillus terreus
BGC0000433.1	0.19	NRP	surfactin	Bacillus velezensis FZB42
BGC0001543.1	0.18	Polyketide	chejuenolide A, chejuenolide B	Hahella chejuensis
BGC0000035.1	0.17	Polyketide	chalcomycin A	Streptomyces bikiniensis

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NZ_KE384122.1 - Region 1 - ranthipeptide

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Location: 32,466 - 54,035 nt. (total: 21,570 nt) Show pHMM detection rules used

ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or YcaO or TIGR03882)))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000601.1	0.19	RiPP	sporulation killing factor	Bacillus subtilis subsp. subtilis str. 168
BGC0000600.1	0.18	RiPP	thurincin H	Bacillus thuringiensis
BGC0000599.1	0.18	RiPP	thuricin CD α, thuricin CD β	Bacillus thuringiensis
BGC0000616.1	0.16	RiPP	amylocyclicin	Bacillus velezensis FZB42
BGC0000486.1	0.16	RiPP	butyrivibriocin AR10	Butyrivibrio fibrisolvens
BGC0001618.1	0.16	RiPP	hyicin 3682	Staphylococcus hyicus
BGC0001291.1	0.16	RiPP	enterocin NKR-5-3B	Enterococcus faecium
BGC0000643.1	0.16	Terpene	carotenoid	Brevundimonas vesicularis
BGC0000634.1	0.16	Terpene	carotenoid	Brevundimonas sp. SD212
BGC0000528.1	0.16	RiPP	michiganin A	Clavibacter michiganensis subsp. michiganensis NCPPB 382

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000601.1	0.50	RiPP	sporulation killing factor	Bacillus subtilis subsp. subtilis str. 168
BGC0000600.1	0.50	RiPP	thurincin H	Bacillus thuringiensis
BGC0000599.1	0.50	RiPP	thuricin CD α, thuricin CD β	Bacillus thuringiensis
BGC0000616.1	0.47	RiPP	amylocyclicin	Bacillus velezensis FZB42
BGC0000486.1	0.47	RiPP	butyrivibriocin AR10	Butyrivibrio fibrisolvens
BGC0001618.1	0.46	RiPP	hyicin 3682	Staphylococcus hyicus
BGC0001291.1	0.46	RiPP	enterocin NKR-5-3B	Enterococcus faecium
BGC0000643.1	0.46	Terpene	carotenoid	Brevundimonas vesicularis
BGC0000634.1	0.46	Terpene	carotenoid	Brevundimonas sp. SD212
BGC0000528.1	0.46	RiPP	michiganin A	Clavibacter michiganensis subsp. michiganensis NCPPB 382

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

c00009_NZ_AUJC.. - Region 1 - cyclic-lactone-autoinducer

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Location: 14,594 - 35,211 nt. (total: 20,618 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000488.1	0.18	RiPP	circularin A	Clostridium beijerinckii
BGC0000554.1	0.16	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0000548.1	0.16	RiPP	salivaricin A	Streptococcus salivarius
BGC0000504.1	0.16	RiPP	cytolysin ClyLl, cytolysin ClyLs	Plasmid pAD1
BGC0001639.1	0.16	RiPP	klebsidin	Klebsiella pneumoniae
BGC0000500.1	0.16	RiPP	carnolysin A1, carnolysin A2	Carnobacterium maltaromaticum
BGC0001863.1	0.16	RiPP, Terpene	bacillicn CER074	Bacillus mycoides
BGC0000486.1	0.15	RiPP	butyrivibriocin AR10	Butyrivibrio fibrisolvens
BGC0000501.1	0.15	RiPP	catenulipeptin	Catenulispora acidiphila DSM 44928
BGC0000539.1	0.15	RiPP	nukacin ISK-1	Staphylococcus warneri

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000488.1	0.50	RiPP	circularin A	Clostridium beijerinckii
BGC0000554.1	0.47	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0000548.1	0.47	RiPP	salivaricin A	Streptococcus salivarius
BGC0000504.1	0.47	RiPP	cytolysin ClyLl, cytolysin ClyLs	Plasmid pAD1
BGC0001639.1	0.46	RiPP	klebsidin	Klebsiella pneumoniae
BGC0000500.1	0.46	RiPP	carnolysin A1, carnolysin A2	Carnobacterium maltaromaticum
BGC0001863.1	0.46	RiPP, Terpene	bacillicn CER074	Bacillus mycoides
BGC0000486.1	0.46	RiPP	butyrivibriocin AR10	Butyrivibrio fibrisolvens
BGC0000501.1	0.46	RiPP	catenulipeptin	Catenulispora acidiphila DSM 44928
BGC0000539.1	0.46	RiPP	nukacin ISK-1	Staphylococcus warneri

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names