Select genomic region:
Overview
1.1
2.1
9.1

### Identified secondary metabolite regions using strictness 'relaxed'

NZ_AUJC01000001 (original name was: NZ_AUJC01000001.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1.1 | cyclic-lactone-autoinducer | 348,711 | 369,265 |

NZ_KE384122.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 2.1 | ranthipeptide | 32,466 | 54,035 |

NZ_AUJC01000010 (original name was: NZ_AUJC01000010.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 9.1 | cyclic-lactone-autoinducer | 14,594 | 35,211 |

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1.1 | cyclic-lactone-autoinducer | 348,711 | 369,265 |
Region 2.1 | ranthipeptide | 32,466 | 54,035 |
Region 9.1 | cyclic-lactone-autoinducer | 14,594 | 35,211 |

No secondary metabolite regions were found in these records:
  NZ_AUJC01000004 (original name was: NZ_AUJC01000004.1)
  NZ_AUJC01000005 (original name was: NZ_AUJC01000005.1)
  NZ_AUJC01000006 (original name was: NZ_AUJC01000006.1)
  NZ_AUJC01000007 (original name was: NZ_AUJC01000007.1)
  NZ_AUJC01000008 (original name was: NZ_AUJC01000008.1)
  NZ_AUJC01000009 (original name was: NZ_AUJC01000009.1)
  NZ_AUJC01000011 (original name was: NZ_AUJC01000011.1)
  NZ_KE384123.1
  NZ_AUJC01000014 (original name was: NZ_AUJC01000014.1)
  NZ_AUJC01000015 (original name was: NZ_AUJC01000015.1)
  NZ_AUJC01000016 (original name was: NZ_AUJC01000016.1)
  NZ_AUJC01000017 (original name was: NZ_AUJC01000017.1)
  NZ_AUJC01000018 (original name was: NZ_AUJC01000018.1)
  NZ_AUJC01000019 (original name was: NZ_AUJC01000019.1)
  NZ_AUJC01000020 (original name was: NZ_AUJC01000020.1)
  NZ_AUJC01000021 (original name was: NZ_AUJC01000021.1)
  NZ_AUJC01000022 (original name was: NZ_AUJC01000022.1)
  NZ_AUJC01000023 (original name was: NZ_AUJC01000023.1)
  NZ_AUJC01000024 (original name was: NZ_AUJC01000024.1)
  NZ_AUJC01000025 (original name was: NZ_AUJC01000025.1)
  NZ_AUJC01000026 (original name was: NZ_AUJC01000026.1)
  NZ_AUJC01000027 (original name was: NZ_AUJC01000027.1)
  NZ_AUJC01000028 (original name was: NZ_AUJC01000028.1)
  NZ_AUJC01000029 (original name was: NZ_AUJC01000029.1)
  NZ_AUJC01000030 (original name was: NZ_AUJC01000030.1)
  NZ_AUJC01000031 (original name was: NZ_AUJC01000031.1)
  NZ_AUJC01000032 (original name was: NZ_AUJC01000032.1)

Compact view
c00001_NZ_AUJC.. - Region 1 - cyclic-lactone-autoinducer
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 348,711 - 369,265 nt. (total: 20,555 nt) Show pHMM detection rules used
cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | cyclic-lactone-autoinducer | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000899.1 |  | 0.13 | Other | desosamine | Streptomyces narbonensis
BGC0000898.1 |  | 0.13 | Saccharide | desosamine | Streptomyces venezuelae
BGC0001789.1 |  | 0.09 | RiPP | suicin 90-1330 | Streptococcus suis
BGC0000511.1 |  | 0.09 | RiPP | ericin S | Bacillus subtilis
BGC0001093.1 |  | 0.06 | NRP, Polyketide | disorazol A | Sorangium cellulosum
BGC0001657.1 |  | 0.06 | NRP | lysocin | Lysobacter sp. RH2180-5
BGC0000045.1 |  | 0.05 | Polyketide | dehydrocurvularin | Aspergillus terreus
BGC0000433.1 |  | 0.04 | NRP | surfactin | Bacillus velezensis FZB42
BGC0001543.1 |  | 0.04 | Polyketide | chejuenolide A, chejuenolide B | Hahella chejuensis
BGC0000035.1 |  | 0.04 | Polyketide | chalcomycin A | Streptomyces bikiniensis

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000899.1 |  | 0.42 | Other | desosamine | Streptomyces narbonensis
BGC0000898.1 |  | 0.42 | Saccharide | desosamine | Streptomyces venezuelae
BGC0001789.1 |  | 0.33 | RiPP | suicin 90-1330 | Streptococcus suis
BGC0000511.1 |  | 0.33 | RiPP | ericin S | Bacillus subtilis
BGC0001093.1 |  | 0.27 | NRP, Polyketide | disorazol A | Sorangium cellulosum
BGC0001657.1 |  | 0.25 | NRP | lysocin | Lysobacter sp. RH2180-5
BGC0000045.1 |  | 0.21 | Polyketide | dehydrocurvularin | Aspergillus terreus
BGC0000433.1 |  | 0.19 | NRP | surfactin | Bacillus velezensis FZB42
BGC0001543.1 |  | 0.18 | Polyketide | chejuenolide A, chejuenolide B | Hahella chejuensis
BGC0000035.1 |  | 0.17 | Polyketide | chalcomycin A | Streptomyces bikiniensis

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_KE384122.1 - Region 1 - ranthipeptide
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 32,466 - 54,035 nt. (total: 21,570 nt) Show pHMM detection rules used
ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or YcaO or TIGR03882)))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | ranthipeptide | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000601.1 |  | 0.19 | RiPP | sporulation killing factor | Bacillus subtilis subsp. subtilis str. 168
BGC0000600.1 |  | 0.18 | RiPP | thurincin H | Bacillus thuringiensis
BGC0000599.1 |  | 0.18 | RiPP | thuricin CD α, thuricin CD β | Bacillus thuringiensis
BGC0000616.1 |  | 0.16 | RiPP | amylocyclicin | Bacillus velezensis FZB42
BGC0000486.1 |  | 0.16 | RiPP | butyrivibriocin AR10 | Butyrivibrio fibrisolvens
BGC0001618.1 |  | 0.16 | RiPP | hyicin 3682 | Staphylococcus hyicus
BGC0001291.1 |  | 0.16 | RiPP | enterocin NKR-5-3B | Enterococcus faecium
BGC0000643.1 |  | 0.16 | Terpene | carotenoid | Brevundimonas vesicularis
BGC0000634.1 |  | 0.16 | Terpene | carotenoid | Brevundimonas sp. SD212
BGC0000528.1 |  | 0.16 | RiPP | michiganin A | Clavibacter michiganensis subsp. michiganensis NCPPB 382

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000601.1 |  | 0.50 | RiPP | sporulation killing factor | Bacillus subtilis subsp. subtilis str. 168
BGC0000600.1 |  | 0.50 | RiPP | thurincin H | Bacillus thuringiensis
BGC0000599.1 |  | 0.50 | RiPP | thuricin CD α, thuricin CD β | Bacillus thuringiensis
BGC0000616.1 |  | 0.47 | RiPP | amylocyclicin | Bacillus velezensis FZB42
BGC0000486.1 |  | 0.47 | RiPP | butyrivibriocin AR10 | Butyrivibrio fibrisolvens
BGC0001618.1 |  | 0.46 | RiPP | hyicin 3682 | Staphylococcus hyicus
BGC0001291.1 |  | 0.46 | RiPP | enterocin NKR-5-3B | Enterococcus faecium
BGC0000643.1 |  | 0.46 | Terpene | carotenoid | Brevundimonas vesicularis
BGC0000634.1 |  | 0.46 | Terpene | carotenoid | Brevundimonas sp. SD212
BGC0000528.1 |  | 0.46 | RiPP | michiganin A | Clavibacter michiganensis subsp. michiganensis NCPPB 382

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
c00009_NZ_AUJC.. - Region 1 - cyclic-lactone-autoinducer
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 14,594 - 35,211 nt. (total: 20,618 nt) Show pHMM detection rules used
cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | cyclic-lactone-autoinducer | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000488.1 |  | 0.18 | RiPP | circularin A | Clostridium beijerinckii
BGC0000554.1 |  | 0.16 | RiPP | SRO15-3108 | Streptomyces filamentosus NRRL 15998
BGC0000548.1 |  | 0.16 | RiPP | salivaricin A | Streptococcus salivarius
BGC0000504.1 |  | 0.16 | RiPP | cytolysin ClyLl, cytolysin ClyLs | Plasmid pAD1
BGC0001639.1 |  | 0.16 | RiPP | klebsidin | Klebsiella pneumoniae
BGC0000500.1 |  | 0.16 | RiPP | carnolysin A1, carnolysin A2 | Carnobacterium maltaromaticum
BGC0001863.1 |  | 0.16 | RiPP, Terpene | bacillicn CER074 | Bacillus mycoides
BGC0000486.1 |  | 0.15 | RiPP | butyrivibriocin AR10 | Butyrivibrio fibrisolvens
BGC0000501.1 |  | 0.15 | RiPP | catenulipeptin | Catenulispora acidiphila DSM 44928
BGC0000539.1 |  | 0.15 | RiPP | nukacin ISK-1 | Staphylococcus warneri

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000488.1 |  | 0.50 | RiPP | circularin A | Clostridium beijerinckii
BGC0000554.1 |  | 0.47 | RiPP | SRO15-3108 | Streptomyces filamentosus NRRL 15998
BGC0000548.1 |  | 0.47 | RiPP | salivaricin A | Streptococcus salivarius
BGC0000504.1 |  | 0.47 | RiPP | cytolysin ClyLl, cytolysin ClyLs | Plasmid pAD1
BGC0001639.1 |  | 0.46 | RiPP | klebsidin | Klebsiella pneumoniae
BGC0000500.1 |  | 0.46 | RiPP | carnolysin A1, carnolysin A2 | Carnobacterium maltaromaticum
BGC0001863.1 |  | 0.46 | RiPP, Terpene | bacillicn CER074 | Bacillus mycoides
BGC0000486.1 |  | 0.46 | RiPP | butyrivibriocin AR10 | Butyrivibrio fibrisolvens
BGC0000501.1 |  | 0.46 | RiPP | catenulipeptin | Catenulispora acidiphila DSM 44928
BGC0000539.1 |  | 0.46 | RiPP | nukacin ISK-1 | Staphylococcus warneri

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names