GCF_016126715.1_ASM1612671v1_genomic - 5 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NZ_CP065921.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 1.1	siderophore	701,576	715,319	staphyloferrin A	Other:Non-NRP siderophore	100%
Region 1.2	CDPS,cyclic-lactone-autoinducer	848,887	878,017
Region 1.3	siderophore	2,239,523	2,255,975	staphylobactin	Other	68%
Region 1.4	LAP	2,370,861	2,392,913

NZ_CP065922.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 2.1	RiPP-like	8,043	15,734

No secondary metabolite regions were found in these records:: NZ_CP065923.1

Compact view

NZ_CP065921.1 - Region 1 - siderophore

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Location: 701,576 - 715,319 nt. (total: 13,744 nt) Show pHMM detection rules used

siderophore: IucA_IucC

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

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Gene details

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MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000944.1	0.51	Other (Non-NRP siderophore)	staphyloferrin A	Staphylococcus aureus subsp. aureus NCTC 8325
BGC0001870.1	0.22	Other	putrebactin, avaroferrin	Xenorhabdus budapestensis
BGC0000939.1	0.20	Other	aerobactin	Grimontia hollisae
BGC0000947.1	0.19	Other	vibrioferrin	Vibrio alginolyticus
BGC0000883.1	0.16	Other	arginomycin	Streptomyces arginensis
BGC0000943.1	0.15	Other	staphylobactin	Staphylococcus aureus subsp. aureus NCTC 8325
BGC0000703.1	0.14	Saccharide	kanamycin	Streptomyces kanamyceticus
BGC0000294.1	0.14	NRP	acinetobactin	Acinetobacter baumannii
BGC0001767.1	0.09	NRP	salinichelins	Salinispora pacifica CNY331
BGC0000708.1	0.09	Saccharide	lividomycin	Streptomyces lividus

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000944.1	0.79	Other (Non-NRP siderophore)	staphyloferrin A	Staphylococcus aureus subsp. aureus NCTC 8325
BGC0001870.1	0.54	Other	putrebactin, avaroferrin	Xenorhabdus budapestensis
BGC0000939.1	0.52	Other	aerobactin	Grimontia hollisae
BGC0000947.1	0.51	Other	vibrioferrin	Vibrio alginolyticus
BGC0000883.1	0.46	Other	arginomycin	Streptomyces arginensis
BGC0000943.1	0.44	Other	staphylobactin	Staphylococcus aureus subsp. aureus NCTC 8325
BGC0000703.1	0.43	Saccharide	kanamycin	Streptomyces kanamyceticus
BGC0000294.1	0.43	NRP	acinetobactin	Acinetobacter baumannii
BGC0001767.1	0.33	NRP	salinichelins	Salinispora pacifica CNY331
BGC0000708.1	0.33	Saccharide	lividomycin	Streptomyces lividus

Similar known gene clusters

Detailed Pfam domain annotation

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Detailed TIGRFAM domain annotation

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NZ_CP065921.1 - Region 2 - CDPS,cyclic-lactone-autoinducer

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Location: 848,887 - 878,017 nt. (total: 29,131 nt) Show pHMM detection rules used

CDPS: (CDPS or cycdipepsynth)
cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001291.1	0.40	RiPP	enterocin NKR-5-3B	Enterococcus faecium
BGC0000540.1	0.33	RiPP	paenibacillin	Paenibacillus polymyxa OSY-DF
BGC0001484.1	0.26	Other	2'-chloropentostatin, 2'-amino-2'-deoxyadenosine	Actinomadura sp. ATCC 39365
BGC0002009.1	0.26	Polyketide	kanglemycin A, kanglemycin V1, kanglemycin V2	Amycolatopsis vancoresmycina
BGC0001085.1	0.24	NRP, Terpene	teleocidin B1	Streptomyces blastmyceticus
BGC0000651.1	0.20	Terpene	KS-505a	Streptomyces argenteolus
BGC0000158.1	0.18	Polyketide	tautomycetin	Streptomyces griseochromogenes
BGC0000058.1	0.18	Polyketide	FD-891	Streptomyces graminofaciens
BGC0001872.1	0.18	Polyketide	fabclavine-polyamine	Xenorhabdus bovienii SS-2004
BGC0000333.1	0.17	NRP	cyclomarin D	Salinispora arenicola CNS-205

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001291.1	0.56	RiPP	enterocin NKR-5-3B	Enterococcus faecium
BGC0001171.1	0.50	RiPP	listeriolysin S	Listeria monocytogenes serotype 4b str. F2365
BGC0000540.1	0.49	RiPP	paenibacillin	Paenibacillus polymyxa OSY-DF
BGC0001618.1	0.47	RiPP	hyicin 3682	Staphylococcus hyicus
BGC0000556.1	0.46	RiPP	streptin	Streptococcus pyogenes
BGC0000555.1	0.46	RiPP	staphylococcin C55 α, staphylococcin C55 β	Staphylococcus aureus
BGC0000515.1	0.46	RiPP	geobacillin I	Geobacillus thermodenitrificans NG80-2
BGC0000506.1	0.46	RiPP	entianin	Bacillus subtilis subsp. spizizenii
BGC0000581.1	0.46	RiPP	microcin J25	Escherichia coli
BGC0001787.1	0.46	RiPP	suicin 3908	Streptococcus suis

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

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Detailed TIGRFAM domain annotation

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NZ_CP065921.1 - Region 3 - siderophore

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Location: 2,239,523 - 2,255,975 nt. (total: 16,453 nt) Show pHMM detection rules used

siderophore: IucA_IucC

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000943.1	0.42	Other	staphylobactin	Staphylococcus aureus subsp. aureus NCTC 8325
BGC0001572.1	0.32	Other	desferrioxamine E	Pantoea agglomerans
BGC0001499.1	0.32	Other	aerobactin	Pantoea ananatis
BGC0001713.1	0.31	Other	ochrobactin	Ochrobactrum anthropi
BGC0001453.1	0.31	Other	desferrioxamine	Streptomyces argillaceus
BGC0000295.1	0.30	NRP	acinetoferrin	Acinetobacter haemolyticus
BGC0001870.1	0.30	Other	putrebactin, avaroferrin	Xenorhabdus budapestensis
BGC0000939.1	0.30	Other	aerobactin	Grimontia hollisae
BGC0000942.1	0.28	Other	petrobactin	Bacillus anthracis str. Ames
BGC0000946.1	0.25	Other	vibrioferrin	Vibrio parahaemolyticus

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000943.1	0.73	Other	staphylobactin	Staphylococcus aureus subsp. aureus NCTC 8325
BGC0001572.1	0.65	Other	desferrioxamine E	Pantoea agglomerans
BGC0001499.1	0.65	Other	aerobactin	Pantoea ananatis
BGC0001713.1	0.65	Other	ochrobactin	Ochrobactrum anthropi
BGC0001453.1	0.64	Other	desferrioxamine	Streptomyces argillaceus
BGC0000295.1	0.64	NRP	acinetoferrin	Acinetobacter haemolyticus
BGC0001870.1	0.63	Other	putrebactin, avaroferrin	Xenorhabdus budapestensis
BGC0000939.1	0.63	Other	aerobactin	Grimontia hollisae
BGC0000942.1	0.61	Other	petrobactin	Bacillus anthracis str. Ames
BGC0000946.1	0.59	Other	vibrioferrin	Vibrio parahaemolyticus

Similar known gene clusters

Detailed Pfam domain annotation

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Detailed TIGRFAM domain annotation

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NZ_CP065921.1 - Region 4 - LAP

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Location: 2,370,861 - 2,392,913 nt. (total: 22,053 nt) Show pHMM detection rules used

LAP: ((((goadsporin_like or PF00881 or TIGR03605) and (YcaO or TIGR03882 or TIGR03604)) or TIGR03603 or TIGR03602) and not cyanobactin_synth)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000568.1	0.21	RiPP	microcin B17	Escherichia coli
BGC0001521.1	0.19	NRP	auriculamide	Herpetosiphon aurantiacus DSM 785
BGC0001173.1	0.17	RiPP	plantazolicin	Bacillus pumilus ATCC 7061
BGC0000569.1	0.17	RiPP	plantazolicin	Bacillus velezensis FZB42
BGC0001171.1	0.16	RiPP	listeriolysin S	Listeria monocytogenes serotype 4b str. F2365
BGC0000616.1	0.16	RiPP	amylocyclicin	Bacillus velezensis FZB42
BGC0001222.1	0.16	RiPP	acidocin B	Lactobacillus acidophilus
BGC0000491.1	0.16	RiPP	gassericin A	Lactobacillus gasseri
BGC0000486.1	0.15	RiPP	butyrivibriocin AR10	Butyrivibrio fibrisolvens
BGC0001743.1	0.15	RiPP	plantaricyclin	Lactobacillus plantarum

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000568.1	0.54	RiPP	microcin B17	Escherichia coli
BGC0001521.1	0.51	NRP	auriculamide	Herpetosiphon aurantiacus DSM 785
BGC0001173.1	0.49	RiPP	plantazolicin	Bacillus pumilus ATCC 7061
BGC0000569.1	0.48	RiPP	plantazolicin	Bacillus velezensis FZB42
BGC0001171.1	0.47	RiPP	listeriolysin S	Listeria monocytogenes serotype 4b str. F2365
BGC0000616.1	0.46	RiPP	amylocyclicin	Bacillus velezensis FZB42
BGC0001222.1	0.46	RiPP	acidocin B	Lactobacillus acidophilus
BGC0000491.1	0.46	RiPP	gassericin A	Lactobacillus gasseri
BGC0000486.1	0.46	RiPP	butyrivibriocin AR10	Butyrivibrio fibrisolvens
BGC0001743.1	0.45	RiPP	plantaricyclin	Lactobacillus plantarum

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

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Detailed TIGRFAM domain annotation

Selected features only

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NZ_CP065922.1 - Region 1 - RiPP-like

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Location: 8,043 - 15,734 nt. (total: 7,692 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001222.1	0.09	RiPP	acidocin B	Lactobacillus acidophilus
BGC0000491.1	0.09	RiPP	gassericin A	Lactobacillus gasseri
BGC0000489.1	0.07	RiPP	enterocin AS-48	Enterococcus faecalis
BGC0000626.1	0.05	RiPP	thuricin	Bacillus thuringiensis
BGC0000607.1	0.05	RiPP	micrococcin P1	Macrococcus caseolyticus
BGC0000539.1	0.05	RiPP	nukacin ISK-1	Staphylococcus warneri
BGC0001391.1	0.05	RiPP	thusin	Bacillus thuringiensis serovar rongseni
BGC0001311.1	0.05	RiPP	flavecins	Ruminococcus flavefaciens FD-1
BGC0000488.1	0.05	RiPP	circularin A	Clostridium beijerinckii
BGC0001787.1	0.04	RiPP	suicin 3908	Streptococcus suis

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001222.1	0.34	RiPP	acidocin B	Lactobacillus acidophilus
BGC0000491.1	0.34	RiPP	gassericin A	Lactobacillus gasseri
BGC0000489.1	0.28	RiPP	enterocin AS-48	Enterococcus faecalis
BGC0000626.1	0.24	RiPP	thuricin	Bacillus thuringiensis
BGC0000607.1	0.23	RiPP	micrococcin P1	Macrococcus caseolyticus
BGC0000539.1	0.23	RiPP	nukacin ISK-1	Staphylococcus warneri
BGC0001391.1	0.22	RiPP	thusin	Bacillus thuringiensis serovar rongseni
BGC0001311.1	0.22	RiPP	flavecins	Ruminococcus flavefaciens FD-1
BGC0000488.1	0.22	RiPP	circularin A	Clostridium beijerinckii
BGC0001787.1	0.20	RiPP	suicin 3908	Streptococcus suis

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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