GCF_001975955.2_ASM197595v2_genomic - 4 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NZ_CP031421.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 1	NAPAA	810,803	844,681
Region 2	betalactone	1,040,325	1,067,588	microansamycin	Polyketide	7%
Region 3	terpene	1,673,457	1,694,341	carotenoid	Terpene	21%
Region 4	T3PKS	2,739,430	2,780,593

NZ_CP031421.1 - Region 1 - NAPAA

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Location: 810,803 - 844,681 nt. (total: 33,879 nt) Show pHMM detection rules used

NAPAA: (AMP-binding and PP-binding and TIGR02353)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

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Gene details

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NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

NRPS/PKS modules

Pfam domains

TIGRFAM domains

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000375.1	0.22	NRP	indigoidine	Streptomyces chromofuscus
BGC0001399.1	0.21	NRP	fellutamide B	Aspergillus nidulans FGSC A4
BGC0000427.1	0.20	NRP	shinorine, 4-deoxygadusol, mycosporine glycine	Trichormus variabilis ATCC 29413
BGC0000204.1	0.19	Polyketide	benastatin A, benastatin B, BE-43767, TAN1532B	Streptomyces sp. A2991200
BGC0001591.1	0.19	Other	fatty acid enol ester	uncultured bacterium CSLC2
BGC0001688.1	0.19	Other	N-tetradecanoyl tyrosine	uncultured bacterium CSLC2
BGC0000637.1	0.19	Terpene	carotenoid	Corynebacterium glutamicum
BGC0001768.1	0.18	NRP	sansalvamide	[Nectria] haematococca mpVI 77-13-4
BGC0001135.1	0.18	NRP	bicornutin A1, bicornutin A2	Xenorhabdus budapestensis
BGC0001168.1	0.18	NRP	livipeptin	Streptomyces lividans 1326

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000375.1	0.55	NRP	indigoidine	Streptomyces chromofuscus
BGC0001399.1	0.53	NRP	fellutamide B	Aspergillus nidulans FGSC A4
BGC0000427.1	0.53	NRP	shinorine, 4-deoxygadusol, mycosporine glycine	Trichormus variabilis ATCC 29413
BGC0000204.1	0.51	Polyketide	benastatin A, benastatin B, BE-43767, TAN1532B	Streptomyces sp. A2991200
BGC0001591.1	0.51	Other	fatty acid enol ester	uncultured bacterium CSLC2
BGC0001688.1	0.51	Other	N-tetradecanoyl tyrosine	uncultured bacterium CSLC2
BGC0000637.1	0.50	Terpene	carotenoid	Corynebacterium glutamicum
BGC0001768.1	0.50	NRP	sansalvamide	[Nectria] haematococca mpVI 77-13-4
BGC0001135.1	0.50	NRP	bicornutin A1, bicornutin A2	Xenorhabdus budapestensis
BGC0001168.1	0.50	NRP	livipeptin	Streptomyces lividans 1326

Similar known gene clusters

No matches found.

Module view

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Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 810802 - 844681:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg1_777

Search NORINE for peptide: strict or relaxed

AMP-binding (21..397): X

NRPSPredictor2: (unknown)

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: N/A
Small clusters prediction:: gly, ala
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAESIGtVvK
Nearest Stachelhaus code:: lys
Stachelhaus code match:: 80% (moderate)

NZ_CP031421.1 - Region 2 - betalactone

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Location: 1,040,325 - 1,067,588 nt. (total: 27,264 nt) Show pHMM detection rules used

betalactone: (HMGL-like and AMP-binding)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

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Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000649.1	0.22	Terpene	carotenoid	Streptomyces griseus subsp. griseus NBRC 13350
BGC0001935.1	0.19	Other	3,7-dihydroxytropolone	Streptomyces cyaneofuscatus
BGC0001487.1	0.19	Other	3,7-dihydroxytropolone	Streptomyces cyaneofuscatus
BGC0001897.1	0.18	Polyketide	cepacin A	Burkholderia ambifaria IOP40-10
BGC0001483.1	0.18	Other	5-isoprenylindole-3-carboxylate β-D-glycosyl ester	Streptomyces sp. RM-5-8
BGC0000698.1	0.18	Saccharide	hygromycin A	Streptomyces hygroscopicus
BGC0001910.1	0.17	Terpene	cyslabdan	Streptomyces cyslabdanicus
BGC0001911.1	0.17	Terpene	raimonol	Streptomyces anulatus
BGC0001456.1	0.17	Terpene	isorenieratene	Streptomyces argillaceus
BGC0000633.1	0.17	Terpene	carotenoid	Streptomyces avermitilis

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000649.1	0.55	Terpene	carotenoid	Streptomyces griseus subsp. griseus NBRC 13350
BGC0001935.1	0.51	Other	3,7-dihydroxytropolone	Streptomyces cyaneofuscatus
BGC0001487.1	0.51	Other	3,7-dihydroxytropolone	Streptomyces cyaneofuscatus
BGC0001897.1	0.49	Polyketide	cepacin A	Burkholderia ambifaria IOP40-10
BGC0001483.1	0.49	Other	5-isoprenylindole-3-carboxylate β-D-glycosyl ester	Streptomyces sp. RM-5-8
BGC0000698.1	0.49	Saccharide	hygromycin A	Streptomyces hygroscopicus
BGC0001910.1	0.49	Terpene	cyslabdan	Streptomyces cyslabdanicus
BGC0001911.1	0.48	Terpene	raimonol	Streptomyces anulatus
BGC0001456.1	0.48	Terpene	isorenieratene	Streptomyces argillaceus
BGC0000633.1	0.48	Terpene	carotenoid	Streptomyces avermitilis

Similar known gene clusters

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NZ_CP031421.1 - Region 3 - terpene

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Location: 1,673,457 - 1,694,341 nt. (total: 20,885 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

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Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000650.1	0.34	Terpene	carotenoid	Algoriphagus sp. KK10202C
BGC0000637.1	0.24	Terpene	carotenoid	Corynebacterium glutamicum
BGC0000644.1	0.23	Terpene	carotenoid	Dietzia sp. CQ4
BGC0000645.1	0.21	Terpene	carotenoid	Halobacillus halophilus DSM 2266
BGC0001361.1	0.17	Terpene	sodorifen	Serratia plymuthica 4Rx13
BGC0001903.1	0.16	Other	neocarazostatin A	Streptomyces sp. MA37
BGC0001910.1	0.16	Terpene	cyslabdan	Streptomyces cyslabdanicus
BGC0001140.1	0.14	Terpene	platensimycin, platencin	Streptomyces platensis
BGC0001156.1	0.14	Terpene	platencin	Streptomyces platensis
BGC0000636.1	0.14	Terpene	carotenoid	Brevibacterium linens

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000650.1	0.67	Terpene	carotenoid	Algoriphagus sp. KK10202C
BGC0000637.1	0.57	Terpene	carotenoid	Corynebacterium glutamicum
BGC0000644.1	0.56	Terpene	carotenoid	Dietzia sp. CQ4
BGC0000645.1	0.53	Terpene	carotenoid	Halobacillus halophilus DSM 2266
BGC0001361.1	0.47	Terpene	sodorifen	Serratia plymuthica 4Rx13
BGC0001903.1	0.47	Other	neocarazostatin A	Streptomyces sp. MA37
BGC0001910.1	0.47	Terpene	cyslabdan	Streptomyces cyslabdanicus
BGC0001140.1	0.44	Terpene	platensimycin, platencin	Streptomyces platensis
BGC0001156.1	0.44	Terpene	platencin	Streptomyces platensis
BGC0000636.1	0.44	Terpene	carotenoid	Brevibacterium linens

Similar known gene clusters

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

NZ_CP031421.1 - Region 4 - T3PKS

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Location: 2,739,430 - 2,780,593 nt. (total: 41,164 nt) Show pHMM detection rules used

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001938.1	0.35	Polyketide	entotheonella	Candidatus Entotheonella serta
BGC0001962.1	0.35	Polyketide	hierridin B, hierridin C	Cyanobium sp. LEGE 06113
BGC0001831.1	0.25	Polyketide	alkylpyrone-407, alkylpyrone-393	Myxococcus xanthus DK 1622
BGC0001483.1	0.22	Other	5-isoprenylindole-3-carboxylate β-D-glycosyl ester	Streptomyces sp. RM-5-8
BGC0000709.1	0.22	Saccharide	neomycin	Streptomyces fradiae ATCC 10745 = DSM 40063
BGC0000843.1	0.20	Other (Non-NRP beta-lactam)	alanylclavam, 2-hydroxymethylclavam, 2-formyloxymethylclavam, clavam-2-carboxylate	Streptomyces clavuligerus ATCC 27064
BGC0000679.1	0.20	Terpene	diazepinomicin	Micromonospora sp. M42
BGC0001964.1	0.19	Polyketide	alkylpyrone-407, alkylpyrone-393	Cystobacterineae bacterium
BGC0001591.1	0.18	Other	fatty acid enol ester	uncultured bacterium CSLC2
BGC0001688.1	0.18	Other	N-tetradecanoyl tyrosine	uncultured bacterium CSLC2

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001938.1	0.68	Polyketide	entotheonella	Candidatus Entotheonella serta
BGC0001962.1	0.68	Polyketide	hierridin B, hierridin C	Cyanobium sp. LEGE 06113
BGC0001831.1	0.58	Polyketide	alkylpyrone-407, alkylpyrone-393	Myxococcus xanthus DK 1622
BGC0001483.1	0.55	Other	5-isoprenylindole-3-carboxylate β-D-glycosyl ester	Streptomyces sp. RM-5-8
BGC0000709.1	0.54	Saccharide	neomycin	Streptomyces fradiae ATCC 10745 = DSM 40063
BGC0000843.1	0.53	Other (Non-NRP beta-lactam)	alanylclavam, 2-hydroxymethylclavam, 2-formyloxymethylclavam, clavam-2-carboxylate	Streptomyces clavuligerus ATCC 27064
BGC0000679.1	0.52	Terpene	diazepinomicin	Micromonospora sp. M42
BGC0001964.1	0.51	Polyketide	alkylpyrone-407, alkylpyrone-393	Cystobacterineae bacterium
BGC0001591.1	0.50	Other	fatty acid enol ester	uncultured bacterium CSLC2
BGC0001688.1	0.50	Other	N-tetradecanoyl tyrosine	uncultured bacterium CSLC2

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names