GCF_004168365.1_ASM416836v1_genomic - 3 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NZ_CP035704.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 1.1	terpene	2,902,212	2,923,075
Region 1.2	RiPP-like	3,135,079	3,145,987
Region 1.3	arylpolyene	4,605,443	4,646,636	xanthomonadin I	Other	35%

Region	Type	From	To	Most similar known cluster	Similarity
Region 1.1	terpene	2,902,212	2,923,075
Region 1.2	RiPP-like	3,135,079	3,145,987
Region 1.3	arylpolyene	4,605,443	4,646,636	xanthomonadin I	Other	35%

No secondary metabolite regions were found in these records:: NZ_CP035703.1

Compact view

NZ_CP035704.1 - Region 1 - terpene

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Location: 2,902,212 - 2,923,075 nt. (total: 20,864 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000867.1	0.21	Other	polyhydroxyalkanoic acids	Ectothiorhodospira shaposhnikovii
BGC0001227.1	0.21	Terpene	isorenieratene	Streptomyces collinus Tu 365
BGC0000866.1	0.19	Other	polyhydroxyalkanoate	Burkholderia sp. DSM 9242
BGC0000231.1	0.18	Polyketide	griseusin	Streptomyces griseus
BGC0000234.1	0.18	Polyketide	jadomycin	Streptomyces venezuelae ATCC 10712
BGC0001197.1	0.17	Polyketide	frankiamicin	Frankia sp. EAN1pec
BGC0001987.1	0.17	Polyketide	koreenceine A, koreenceine B, koreenceine C, koreenceine D	Pseudomonas koreensis
BGC0000265.1	0.17	Polyketide	rhodomycin	Streptomyces purpurascens
BGC0001917.1	0.16	Polyketide	5-alkyl-1,2,3,4-tetrahydroquinolines, streptoaminals	Streptomyces nigrescens
BGC0001723.1	0.16	Polyketide	oviedomycin	Streptomyces antibioticus

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000867.1	0.54	Other	polyhydroxyalkanoic acids	Ectothiorhodospira shaposhnikovii
BGC0001227.1	0.53	Terpene	isorenieratene	Streptomyces collinus Tu 365
BGC0000866.1	0.51	Other	polyhydroxyalkanoate	Burkholderia sp. DSM 9242
BGC0000231.1	0.50	Polyketide	griseusin	Streptomyces griseus
BGC0000234.1	0.49	Polyketide	jadomycin	Streptomyces venezuelae ATCC 10712
BGC0001197.1	0.49	Polyketide	frankiamicin	Frankia sp. EAN1pec
BGC0001987.1	0.48	Polyketide	koreenceine A, koreenceine B, koreenceine C, koreenceine D	Pseudomonas koreensis
BGC0000265.1	0.48	Polyketide	rhodomycin	Streptomyces purpurascens
BGC0001917.1	0.47	Polyketide	5-alkyl-1,2,3,4-tetrahydroquinolines, streptoaminals	Streptomyces nigrescens
BGC0001723.1	0.47	Polyketide	oviedomycin	Streptomyces antibioticus

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NZ_CP035704.1 - Region 2 - RiPP-like

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Location: 3,135,079 - 3,145,987 nt. (total: 10,909 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000760.1	0.17	Saccharide	emulsan	Acinetobacter venetianus RAG-1 = CIP 110063
BGC0001947.1	0.17	Saccharide	K53 capsular polysaccharide	Acinetobacter baumannii
BGC0000775.1	0.16	Saccharide	lipopolysaccharide	Legionella pneumophila

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000760.1	0.48	Saccharide	emulsan	Acinetobacter venetianus RAG-1 = CIP 110063
BGC0001947.1	0.48	Saccharide	K53 capsular polysaccharide	Acinetobacter baumannii
BGC0000775.1	0.46	Saccharide	lipopolysaccharide	Legionella pneumophila

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NZ_CP035704.1 - Region 3 - arylpolyene

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Location: 4,605,443 - 4,646,636 nt. (total: 41,194 nt) Show pHMM detection rules used

arylpolyene: (APE_KS1 or APE_KS2)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000563.1	0.26	RiPP	venezuelin	Streptomyces venezuelae ATCC 10712
BGC0000843.1	0.24	Other (Non-NRP beta-lactam)	alanylclavam, 2-hydroxymethylclavam, 2-formyloxymethylclavam, clavam-2-carboxylate	Streptomyces clavuligerus ATCC 27064
BGC0001343.1	0.23	Polyketide	aurachin A, aurachin D	Stigmatella aurantiaca Sg a15
BGC0001861.1	0.20	RiPP	bacillicin BAG2O	Bacillus cereus BAG2O-1
BGC0001197.1	0.20	Polyketide	frankiamicin	Frankia sp. EAN1pec
BGC0000874.1	0.20	Other	blasticidin S	Streptomyces griseochromogenes
BGC0000632.1	0.19	Terpene, Saccharide	brasilicardin A	Nocardia terpenica
BGC0000880.1	0.18	Other (Nucleoside)	tunicamycin B1	Streptomyces chartreusis NRRL 3882
BGC0001177.1	0.18	Polyketide	mensacaricin	Streptomyces bottropensis
BGC0001441.1	0.17	Other	belactosin A, belactosin C	Streptomyces sp.

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000563.1	0.59	RiPP	venezuelin	Streptomyces venezuelae ATCC 10712
BGC0000843.1	0.57	Other (Non-NRP beta-lactam)	alanylclavam, 2-hydroxymethylclavam, 2-formyloxymethylclavam, clavam-2-carboxylate	Streptomyces clavuligerus ATCC 27064
BGC0001343.1	0.56	Polyketide	aurachin A, aurachin D	Stigmatella aurantiaca Sg a15
BGC0001861.1	0.53	RiPP	bacillicin BAG2O	Bacillus cereus BAG2O-1
BGC0001197.1	0.53	Polyketide	frankiamicin	Frankia sp. EAN1pec
BGC0000874.1	0.52	Other	blasticidin S	Streptomyces griseochromogenes
BGC0000632.1	0.51	Terpene, Saccharide	brasilicardin A	Nocardia terpenica
BGC0000880.1	0.50	Other (Nucleoside)	tunicamycin B1	Streptomyces chartreusis NRRL 3882
BGC0001177.1	0.49	Polyketide	mensacaricin	Streptomyces bottropensis
BGC0001441.1	0.49	Other	belactosin A, belactosin C	Streptomyces sp.

Similar known gene clusters

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names