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Overview
1.1
1.2
1.3

### Identified secondary metabolite regions using strictness 'relaxed'

NZ_CP035704.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1.1 | terpene | 2,902,212 | 2,923,075 |
Region 1.2 | RiPP-like | 3,135,079 | 3,145,987 |
Region 1.3 | arylpolyene | 4,605,443 | 4,646,636 | xanthomonadin I | Other | 35%

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 1.1 | terpene | 2,902,212 | 2,923,075 |
Region 1.2 | RiPP-like | 3,135,079 | 3,145,987 |
Region 1.3 | arylpolyene | 4,605,443 | 4,646,636 | xanthomonadin I | Other | 35%

No secondary metabolite regions were found in these records:
  NZ_CP035703.1

Compact view
NZ_CP035704.1 - Region 1 - terpene
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 2,902,212 - 2,923,075 nt. (total: 20,864 nt) Show pHMM detection rules used
terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | terpene | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000867.1 |  | 0.21 | Other | polyhydroxyalkanoic acids | Ectothiorhodospira shaposhnikovii
BGC0001227.1 |  | 0.21 | Terpene | isorenieratene | Streptomyces collinus Tu 365
BGC0000866.1 |  | 0.19 | Other | polyhydroxyalkanoate | Burkholderia sp. DSM 9242
BGC0000231.1 |  | 0.18 | Polyketide | griseusin | Streptomyces griseus
BGC0000234.1 |  | 0.18 | Polyketide | jadomycin | Streptomyces venezuelae ATCC 10712
BGC0001197.1 |  | 0.17 | Polyketide | frankiamicin | Frankia sp. EAN1pec
BGC0001987.1 |  | 0.17 | Polyketide | koreenceine A, koreenceine B, koreenceine C, koreenceine D | Pseudomonas koreensis
BGC0000265.1 |  | 0.17 | Polyketide | rhodomycin | Streptomyces purpurascens
BGC0001917.1 |  | 0.16 | Polyketide | 5-alkyl-1,2,3,4-tetrahydroquinolines, streptoaminals | Streptomyces nigrescens
BGC0001723.1 |  | 0.16 | Polyketide | oviedomycin | Streptomyces antibioticus

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000867.1 |  | 0.54 | Other | polyhydroxyalkanoic acids | Ectothiorhodospira shaposhnikovii
BGC0001227.1 |  | 0.53 | Terpene | isorenieratene | Streptomyces collinus Tu 365
BGC0000866.1 |  | 0.51 | Other | polyhydroxyalkanoate | Burkholderia sp. DSM 9242
BGC0000231.1 |  | 0.50 | Polyketide | griseusin | Streptomyces griseus
BGC0000234.1 |  | 0.49 | Polyketide | jadomycin | Streptomyces venezuelae ATCC 10712
BGC0001197.1 |  | 0.49 | Polyketide | frankiamicin | Frankia sp. EAN1pec
BGC0001987.1 |  | 0.48 | Polyketide | koreenceine A, koreenceine B, koreenceine C, koreenceine D | Pseudomonas koreensis
BGC0000265.1 |  | 0.48 | Polyketide | rhodomycin | Streptomyces purpurascens
BGC0001917.1 |  | 0.47 | Polyketide | 5-alkyl-1,2,3,4-tetrahydroquinolines, streptoaminals | Streptomyces nigrescens
BGC0001723.1 |  | 0.47 | Polyketide | oviedomycin | Streptomyces antibioticus

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_CP035704.1 - Region 2 - RiPP-like
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 3,135,079 - 3,145,987 nt. (total: 10,909 nt) Show pHMM detection rules used
RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | RiPP-like | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000760.1 |  | 0.17 | Saccharide | emulsan | Acinetobacter venetianus RAG-1 = CIP 110063
BGC0001947.1 |  | 0.17 | Saccharide | K53 capsular polysaccharide | Acinetobacter baumannii
BGC0000775.1 |  | 0.16 | Saccharide | lipopolysaccharide | Legionella pneumophila

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000760.1 |  | 0.48 | Saccharide | emulsan | Acinetobacter venetianus RAG-1 = CIP 110063
BGC0001947.1 |  | 0.48 | Saccharide | K53 capsular polysaccharide | Acinetobacter baumannii
BGC0000775.1 |  | 0.46 | Saccharide | lipopolysaccharide | Legionella pneumophila

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
NZ_CP035704.1 - Region 3 - arylpolyene
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 4,605,443 - 4,646,636 nt. (total: 41,194 nt) Show pHMM detection rules used
arylpolyene: (APE_KS1 or APE_KS2)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | arylpolyene | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000563.1 |  | 0.26 | RiPP | venezuelin | Streptomyces venezuelae ATCC 10712
BGC0000843.1 |  | 0.24 | Other (Non-NRP beta-lactam) | alanylclavam, 2-hydroxymethylclavam, 2-formyloxymethylclavam, clavam-2-carboxylate | Streptomyces clavuligerus ATCC 27064
BGC0001343.1 |  | 0.23 | Polyketide | aurachin A, aurachin D | Stigmatella aurantiaca Sg a15
BGC0001861.1 |  | 0.20 | RiPP | bacillicin BAG2O | Bacillus cereus BAG2O-1
BGC0001197.1 |  | 0.20 | Polyketide | frankiamicin | Frankia sp. EAN1pec
BGC0000874.1 |  | 0.20 | Other | blasticidin S | Streptomyces griseochromogenes
BGC0000632.1 |  | 0.19 | Terpene, Saccharide | brasilicardin A | Nocardia terpenica
BGC0000880.1 |  | 0.18 | Other (Nucleoside) | tunicamycin B1 | Streptomyces chartreusis NRRL 3882
BGC0001177.1 |  | 0.18 | Polyketide | mensacaricin | Streptomyces bottropensis
BGC0001441.1 |  | 0.17 | Other | belactosin A, belactosin C | Streptomyces sp.

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000563.1 |  | 0.59 | RiPP | venezuelin | Streptomyces venezuelae ATCC 10712
BGC0000843.1 |  | 0.57 | Other (Non-NRP beta-lactam) | alanylclavam, 2-hydroxymethylclavam, 2-formyloxymethylclavam, clavam-2-carboxylate | Streptomyces clavuligerus ATCC 27064
BGC0001343.1 |  | 0.56 | Polyketide | aurachin A, aurachin D | Stigmatella aurantiaca Sg a15
BGC0001861.1 |  | 0.53 | RiPP | bacillicin BAG2O | Bacillus cereus BAG2O-1
BGC0001197.1 |  | 0.53 | Polyketide | frankiamicin | Frankia sp. EAN1pec
BGC0000874.1 |  | 0.52 | Other | blasticidin S | Streptomyces griseochromogenes
BGC0000632.1 |  | 0.51 | Terpene, Saccharide | brasilicardin A | Nocardia terpenica
BGC0000880.1 |  | 0.50 | Other (Nucleoside) | tunicamycin B1 | Streptomyces chartreusis NRRL 3882
BGC0001177.1 |  | 0.49 | Polyketide | mensacaricin | Streptomyces bottropensis
BGC0001441.1 |  | 0.49 | Other | belactosin A, belactosin C | Streptomyces sp.

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names