GCF_003994255.1_ASM399425v1_genomic - 3 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NZ_ML133856.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 6.1	NAPAA,ectoine	177,714	211,682	ectoine	Other	75%

NZ_ML133860.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 10.1	siderophore	141,460	152,335

NZ_ML133866.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 16.1	terpene	11,462	26,753	carotenoid	Terpene	50%

No secondary metabolite regions were found in these records:: NZ_ML133851.1; NZ_ML133852.1; NZ_ML133853.1; NZ_ML133854.1; NZ_ML133855.1; NZ_ML133857.1; NZ_ML133858.1; NZ_ML133859.1; NZ_ML133861.1; NZ_ML133862.1; NZ_ML133863.1; NZ_ML133864.1; NZ_ML133865.1; NZ_ML133867.1; NZ_ML133868.1; NZ_ML133869.1; NZ_ML133870.1; NZ_ML133871.1; NZ_ML133872.1; NZ_ML133873.1; NZ_ML133874.1; NZ_ML133875.1; NZ_ML133876.1; NZ_ML133877.1; NZ_ML133878.1; NZ_ML133879.1; NZ_ML133880.1

Compact view

NZ_ML133856.1 - Region 1 - NAPAA,ectoine

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Location: 177,714 - 211,682 nt. (total: 33,969 nt) Show pHMM detection rules used

NAPAA: (AMP-binding and PP-binding and TIGR02353)
ectoine: ectoine_synt

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

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Gene details

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NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

NRPS/PKS modules

Pfam domains

TIGRFAM domains

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000853.1	0.86	Other	ectoine	Streptomyces anulatus
BGC0000855.1	0.80	Other	ectoine	Methylomicrobium kenyense
BGC0000859.1	0.80	Other	ectoine	Methylomicrobium alcaliphilum
BGC0000856.1	0.80	Other	ectoine	Methylophaga thalassica
BGC0000852.1	0.76	Other	ectoine	Sporosarcina pasteurii
BGC0000858.1	0.63	Other	ectoine	Methylobacter marinus
BGC0000857.1	0.61	Other	ectoine	Methylophaga alcalica
BGC0000860.1	0.61	Other	ectoine	Methylarcula marina
BGC0000854.1	0.56	Other	ectoine	Methylomicrobium alcaliphilum 20Z
BGC0000804.1	0.27	Saccharide	acarviostatin I03, acarviostatin II03, acarviostatin III03, acarviostatin IV03	Streptomyces coelicoflavus ZG0656

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000853.1	0.74	Other	ectoine	Streptomyces anulatus
BGC0000855.1	0.72	Other	ectoine	Methylomicrobium kenyense
BGC0000859.1	0.72	Other	ectoine	Methylomicrobium alcaliphilum
BGC0000856.1	0.72	Other	ectoine	Methylophaga thalassica
BGC0000852.1	0.70	Other	ectoine	Sporosarcina pasteurii
BGC0000858.1	0.65	Other	ectoine	Methylobacter marinus
BGC0000857.1	0.64	Other	ectoine	Methylophaga alcalica
BGC0000860.1	0.64	Other	ectoine	Methylarcula marina
BGC0000854.1	0.62	Other	ectoine	Methylomicrobium alcaliphilum 20Z
BGC0000427.1	0.53	NRP	shinorine, 4-deoxygadusol, mycosporine glycine	Trichormus variabilis ATCC 29413

Similar known gene clusters

Module view

Legend

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 177713 - 211682:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg6_200

Search NORINE for peptide: strict or relaxed

AMP-binding (27..408): X

NRPSPredictor2: (unknown)

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAESIGtVvK
Nearest Stachelhaus code:: lys
Stachelhaus code match:: 80% (moderate)

NZ_ML133860.1 - Region 1 - siderophore

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Location: 141,460 - 152,335 nt. (total: 10,876 nt) Show pHMM detection rules used

siderophore: IucA_IucC

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000941.1	0.33	Other	desferrioxamin B	Streptomyces griseus subsp. griseus NBRC 13350
BGC0001478.1	0.33	Other	desferrioxamine E	Streptomyces sp. ID38640
BGC0001572.1	0.32	Other	desferrioxamine E	Pantoea agglomerans
BGC0001453.1	0.30	Other	desferrioxamine	Streptomyces argillaceus
BGC0000940.1	0.29	Other	desferrioxamin B, desferrioxamine E	Streptomyces coelicolor A3(2)
BGC0001531.1	0.19	Other	bisucaberin B	Tenacibaculum mesophilum
BGC0000905.1	0.17	Other	heme D1	Heliobacillus mobilis
BGC0001475.1	0.17	Polyketide	aspterric acid	Aspergillus terreus NIH2624
BGC0000906.1	0.16	Other	heme D1	Heliophilum fasciatum
BGC0001928.1	0.15	Other	(2R,3S,4S)-5-fluoro-2,3,4-trihydroxypentanoic acid	Streptomyces sp. MA37

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000941.1	0.66	Other	desferrioxamin B	Streptomyces griseus subsp. griseus NBRC 13350
BGC0001478.1	0.66	Other	desferrioxamine E	Streptomyces sp. ID38640
BGC0001572.1	0.65	Other	desferrioxamine E	Pantoea agglomerans
BGC0001453.1	0.64	Other	desferrioxamine	Streptomyces argillaceus
BGC0000940.1	0.63	Other	desferrioxamin B, desferrioxamine E	Streptomyces coelicolor A3(2)
BGC0001531.1	0.51	Other	bisucaberin B	Tenacibaculum mesophilum
BGC0000905.1	0.48	Other	heme D1	Heliobacillus mobilis
BGC0001475.1	0.47	Polyketide	aspterric acid	Aspergillus terreus NIH2624
BGC0000906.1	0.47	Other	heme D1	Heliophilum fasciatum
BGC0001928.1	0.45	Other	(2R,3S,4S)-5-fluoro-2,3,4-trihydroxypentanoic acid	Streptomyces sp. MA37

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NZ_ML133866.1 - Region 1 - terpene

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Location: 11,462 - 26,753 nt. (total: 15,292 nt) Show pHMM detection rules used

Region on contig edge.

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000637.1	0.36	Terpene	carotenoid	Corynebacterium glutamicum
BGC0000650.1	0.28	Terpene	carotenoid	Algoriphagus sp. KK10202C
BGC0000644.1	0.27	Terpene	carotenoid	Dietzia sp. CQ4
BGC0000648.1	0.22	Terpene	carotenoid	Myxococcus xanthus
BGC0001227.1	0.22	Terpene	isorenieratene	Streptomyces collinus Tu 365
BGC0000641.1	0.18	Terpene	carotenoid	Enterobacteriaceae bacterium DC416
BGC0000649.1	0.18	Terpene	carotenoid	Streptomyces griseus subsp. griseus NBRC 13350
BGC0000664.1	0.17	Terpene	isorenieratene	Streptomyces griseus subsp. griseus NBRC 13350
BGC0001986.1	0.17	Other	purincyclamide	Streptomyces chrestomyceticus
BGC0000286.1	0.17	Polyketide	viguiepinol	Streptomyces sp. KO-3988

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000637.1	0.68	Terpene	carotenoid	Corynebacterium glutamicum
BGC0000650.1	0.61	Terpene	carotenoid	Algoriphagus sp. KK10202C
BGC0000644.1	0.60	Terpene	carotenoid	Dietzia sp. CQ4
BGC0000648.1	0.54	Terpene	carotenoid	Myxococcus xanthus
BGC0001227.1	0.54	Terpene	isorenieratene	Streptomyces collinus Tu 365
BGC0000641.1	0.49	Terpene	carotenoid	Enterobacteriaceae bacterium DC416
BGC0000649.1	0.49	Terpene	carotenoid	Streptomyces griseus subsp. griseus NBRC 13350
BGC0000664.1	0.49	Terpene	isorenieratene	Streptomyces griseus subsp. griseus NBRC 13350
BGC0001986.1	0.48	Other	purincyclamide	Streptomyces chrestomyceticus
BGC0000286.1	0.48	Polyketide	viguiepinol	Streptomyces sp. KO-3988

Similar known gene clusters

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names