GCF_900018785.1_Xanthomonas_massiliensis_genomic - 3 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NZ_FCOY01000002 (original name was: NZ_FCOY01000002.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 2.1	lassopeptide	17,296	39,718

NZ_FCOY01000007 (original name was: NZ_FCOY01000007.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 7.1	arylpolyene	884,944	926,134	xanthomonadin I	Other	57%
Region 7.2	RiPP-like	1,003,138	1,013,962

Region	Type	From	To	Most similar known cluster	Similarity
Region 2.1	lassopeptide	17,296	39,718
Region 7.1	arylpolyene	884,944	926,134	xanthomonadin I	Other	57%
Region 7.2	RiPP-like	1,003,138	1,013,962

No secondary metabolite regions were found in these records:: NZ_FCOY01000001 (original name was: NZ_FCOY01000001.1); NZ_FCOY01000003 (original name was: NZ_FCOY01000003.1); NZ_FCOY01000004 (original name was: NZ_FCOY01000004.1); NZ_FCOY01000005 (original name was: NZ_FCOY01000005.1); NZ_FCOY01000006 (original name was: NZ_FCOY01000006.1)

Compact view

c00002_NZ_FCOY.. - Region 1 - lassopeptide

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Location: 17,296 - 39,718 nt. (total: 22,423 nt) Show pHMM detection rules used

lassopeptide: (PF13471 and Asn_synthase or micJ25 or mcjC)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

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Gene details

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MIBiG comparison

KnownClusterBlast

Lasso peptides

Pfam domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000580.1	0.32	RiPP	xanthomonin I, xanthomonin II	Xanthomonas gardneri ATCC 19865
BGC0000576.1	0.32	RiPP	rubrivinodin	Rubrivivax gelatinosus IL144
BGC0000577.1	0.31	RiPP	sphingonodin II	Sphingobium japonicum UT26S
BGC0000570.1	0.31	RiPP	astexin-1	Asticcacaulis excentricus CB 48
BGC0001786.1	0.28	RiPP	subterisin	Novosphingobium subterraneum
BGC0000573.1	0.28	RiPP	caulonodin I, caulonodin II	Caulobacter sp. K31
BGC0001184.1	0.22	Other	bacilysin	Bacillus velezensis FZB42
BGC0000888.1	0.22	Other	bacilysin	Bacillus sp. CS93
BGC0000574.1	0.18	RiPP	caulosegnin I, caulosegnin II, caulosegnin III	Caulobacter segnis ATCC 21756
BGC0001140.1	0.16	Terpene	platensimycin, platencin	Streptomyces platensis

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000580.1	0.65	RiPP	xanthomonin I, xanthomonin II	Xanthomonas gardneri ATCC 19865
BGC0000576.1	0.65	RiPP	rubrivinodin	Rubrivivax gelatinosus IL144
BGC0000577.1	0.65	RiPP	sphingonodin II	Sphingobium japonicum UT26S
BGC0000570.1	0.65	RiPP	astexin-1	Asticcacaulis excentricus CB 48
BGC0001786.1	0.62	RiPP	subterisin	Novosphingobium subterraneum
BGC0000573.1	0.61	RiPP	caulonodin I, caulonodin II	Caulobacter sp. K31
BGC0001184.1	0.55	Other	bacilysin	Bacillus velezensis FZB42
BGC0000888.1	0.55	Other	bacilysin	Bacillus sp. CS93
BGC0000574.1	0.50	RiPP	caulosegnin I, caulosegnin II, caulosegnin III	Caulobacter segnis ATCC 21756
BGC0001140.1	0.46	Terpene	platensimycin, platencin	Streptomyces platensis

Similar known gene clusters

No matches found.

Lasso peptide predictions

Lassopeptide(s) for ctg2_28 - Putative Class II

ctg2_28 leader / core peptide / cleaved tail: MDTKQNTRTNTAEDLIVLGVASVETK - GGAGFGEPTGPGLPMIPG - ISEE

Legend:

Red: Putative macrolactam
Purple: Putative cleaved off residues

Detailed Pfam domain annotation

Selected features only

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Lasso peptides

Core peptide predictions

ctg2_28 - Class II: Cleavage pHMM score: 14.00; RODEO score: 25; Monoisotopic mass: 1592.8 Da; Molecular weight: 1593.8 Da; Number of bridges: 0

c00007_NZ_FCOY.. - Region 1 - arylpolyene

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Location: 884,944 - 926,134 nt. (total: 41,191 nt) Show pHMM detection rules used

arylpolyene: (APE_KS1 or APE_KS2)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

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Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000783.1	0.34	Saccharide	O-antigen	Xanthomonas oryzae pv. oryzae
BGC0001538.1	0.29	NRP, Polyketide	caboxamycin	Streptomyces sp. NTK 937
BGC0000888.1	0.29	Other	bacilysin	Bacillus sp. CS93
BGC0001444.1	0.27	Other	caboxamycin	Streptomyces sp. NTK 937
BGC0001197.1	0.24	Polyketide	frankiamicin	Frankia sp. EAN1pec
BGC0000228.1	0.23	Polyketide	granaticin	Streptomyces violaceoruber
BGC0001723.1	0.22	Polyketide	oviedomycin	Streptomyces antibioticus
BGC0000840.1	0.22	Other	xanthomonadin I	Xanthomonas oryzae pv. oryzae
BGC0001895.1	0.21	Polyketide	huanglongmycin A, huanglongmycin B, huanglongmycin C	Streptomyces sp. CB09001
BGC0001343.1	0.21	Polyketide	aurachin A, aurachin D	Stigmatella aurantiaca Sg a15

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000783.1	0.67	Saccharide	O-antigen	Xanthomonas oryzae pv. oryzae
BGC0001538.1	0.63	NRP, Polyketide	caboxamycin	Streptomyces sp. NTK 937
BGC0000888.1	0.62	Other	bacilysin	Bacillus sp. CS93
BGC0001444.1	0.61	Other	caboxamycin	Streptomyces sp. NTK 937
BGC0001197.1	0.57	Polyketide	frankiamicin	Frankia sp. EAN1pec
BGC0000228.1	0.57	Polyketide	granaticin	Streptomyces violaceoruber
BGC0001723.1	0.55	Polyketide	oviedomycin	Streptomyces antibioticus
BGC0000840.1	0.55	Other	xanthomonadin I	Xanthomonas oryzae pv. oryzae
BGC0001895.1	0.54	Polyketide	huanglongmycin A, huanglongmycin B, huanglongmycin C	Streptomyces sp. CB09001
BGC0001343.1	0.54	Polyketide	aurachin A, aurachin D	Stigmatella aurantiaca Sg a15

Similar known gene clusters

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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c00007_NZ_FCOY.. - Region 2 - RiPP-like

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Location: 1,003,138 - 1,013,962 nt. (total: 10,825 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001882.1	0.19	Polyketide	chrysoxanthone A, chrysoxanthone B, chrysoxanthone C	Penicillium rubens Wisconsin 54-1255
BGC0000573.1	0.12	RiPP	caulonodin I, caulonodin II	Caulobacter sp. K31
BGC0001556.1	0.09	NRP, Polyketide	combamide	Streptomyces sp.
BGC0000221.1	0.07	Polyketide	erdacin	uncultured soil bacterium V167
BGC0000274.1	0.07	Polyketide	tetarimycin A, tetarimycin B	uncultured bacterium
BGC0000279.1	0.06	Polyketide	xantholipin	Streptomyces flavogriseus
BGC0000966.1	0.05	NRP, Polyketide	caerulomycin A	Actinoalloteichus sp. WH1-2216-6
BGC0001568.1	0.05	Polyketide	cytorhodin	Streptomyces sp. SCSIO 1666
BGC0001074.1	0.05	Saccharide, Polyketide	cosmomycin D	Streptomyces olindensis
BGC0001956.1	0.05	Polyketide	miharamycin A, miharamycin B	Streptomyces miharaensis

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001882.1	0.51	Polyketide	chrysoxanthone A, chrysoxanthone B, chrysoxanthone C	Penicillium rubens Wisconsin 54-1255
BGC0000573.1	0.40	RiPP	caulonodin I, caulonodin II	Caulobacter sp. K31
BGC0001556.1	0.34	NRP, Polyketide	combamide	Streptomyces sp.
BGC0000221.1	0.29	Polyketide	erdacin	uncultured soil bacterium V167
BGC0000274.1	0.27	Polyketide	tetarimycin A, tetarimycin B	uncultured bacterium
BGC0000279.1	0.25	Polyketide	xantholipin	Streptomyces flavogriseus
BGC0000966.1	0.22	NRP, Polyketide	caerulomycin A	Actinoalloteichus sp. WH1-2216-6
BGC0001568.1	0.22	Polyketide	cytorhodin	Streptomyces sp. SCSIO 1666
BGC0001074.1	0.21	Saccharide, Polyketide	cosmomycin D	Streptomyces olindensis
BGC0001956.1	0.21	Polyketide	miharamycin A, miharamycin B	Streptomyces miharaensis

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names