GCF_902373955.1_MGYG-HGUT-01328_genomic - 4 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

c00003_NZ_CABK.. (original name was: NZ_CABKOG010000003.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 3.1	cyclic-lactone-autoinducer	286,178	304,900
Region 3.2	RRE-containing	1,574,121	1,592,646
Region 3.3	ranthipeptide	1,944,031	1,965,386
Region 3.4	cyclic-lactone-autoinducer	2,496,250	2,516,825	desotamide	NRP	9%

Region	Type	From	To	Most similar known cluster	Similarity
Region 3.1	cyclic-lactone-autoinducer	286,178	304,900
Region 3.2	RRE-containing	1,574,121	1,592,646
Region 3.3	ranthipeptide	1,944,031	1,965,386
Region 3.4	cyclic-lactone-autoinducer	2,496,250	2,516,825	desotamide	NRP	9%

No secondary metabolite regions were found in these records:: c00001_NZ_CABK.. (original name was: NZ_CABKOG010000001.1); c00002_NZ_CABK.. (original name was: NZ_CABKOG010000002.1); c00004_NZ_CABK.. (original name was: NZ_CABKOG010000004.1); c00005_NZ_CABK.. (original name was: NZ_CABKOG010000005.1)

Compact view

c00003_NZ_CABK.. - Region 1 - cyclic-lactone-autoinducer

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Location: 286,178 - 304,900 nt. (total: 18,723 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000560.1	0.15	RiPP	subtilomycin	Bacillus subtilis
BGC0000602.1	0.15	RiPP	subtilosin A	Bacillus subtilis subsp. spizizenii ATCC 6633
BGC0000509.1	0.15	RiPP	epilancin 15x	Staphylococcus epidermidis
BGC0000792.1	0.15	Saccharide	polysaccharide	Enterococcus faecalis OG1RF
BGC0001891.1	0.13	Other	closthioamide	Ruminiclostridium cellulolyticum H10
BGC0001525.1	0.13	Other	bartoloside 2, bartoloside 3, bartoloside 4	Synechocystis salina LEGE 06155
BGC0002009.1	0.13	Polyketide	kanglemycin A, kanglemycin V1, kanglemycin V2	Amycolatopsis vancoresmycina
BGC0001391.1	0.13	RiPP	thusin	Bacillus thuringiensis serovar rongseni
BGC0001526.1	0.13	Other	bartolosides E, bartolosides F, bartolosides G, bartolosides H, bartolosides I, bartolosides J, bartolosides K	Synechocystis salina LEGE 06099
BGC0000556.1	0.12	RiPP	streptin	Streptococcus pyogenes

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000560.1	0.46	RiPP	subtilomycin	Bacillus subtilis
BGC0000602.1	0.46	RiPP	subtilosin A	Bacillus subtilis subsp. spizizenii ATCC 6633
BGC0000509.1	0.45	RiPP	epilancin 15x	Staphylococcus epidermidis
BGC0000792.1	0.45	Saccharide	polysaccharide	Enterococcus faecalis OG1RF
BGC0001891.1	0.42	Other	closthioamide	Ruminiclostridium cellulolyticum H10
BGC0001525.1	0.42	Other	bartoloside 2, bartoloside 3, bartoloside 4	Synechocystis salina LEGE 06155
BGC0002009.1	0.42	Polyketide	kanglemycin A, kanglemycin V1, kanglemycin V2	Amycolatopsis vancoresmycina
BGC0001391.1	0.41	RiPP	thusin	Bacillus thuringiensis serovar rongseni
BGC0001526.1	0.41	Other	bartolosides E, bartolosides F, bartolosides G, bartolosides H, bartolosides I, bartolosides J, bartolosides K	Synechocystis salina LEGE 06099
BGC0000556.1	0.39	RiPP	streptin	Streptococcus pyogenes

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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c00003_NZ_CABK.. - Region 2 - RRE-containing

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Location: 1,574,121 - 1,592,646 nt. (total: 18,526 nt) Show pHMM detection rules used

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001683.1	0.13	Other	N-acyl serinol	Bacillus sp. 2_A_57_CT2
BGC0001940.1	0.07	Polyketide	pyxidicycline A, pyxidicycline B	Pyxidicoccus fallax
BGC0000993.1	0.05	NRP, Polyketide	FR901228	Chromobacterium violaceum
BGC0000119.1	0.04	Polyketide, Saccharide	7-deoxypactamycin	Streptomyces pactum
BGC0001728.1	0.04	NRP, Polyketide	paenilipoheptin	Paenibacillus polymyxa E681
BGC0001558.1	0.04	Polyketide	cosmomycin C	Streptomyces sp. CNT302
BGC0000118.1	0.04	Polyketide	pactamycin	Streptomyces pactum
BGC0001074.1	0.03	Saccharide, Polyketide	cosmomycin D	Streptomyces olindensis
BGC0001568.1	0.03	Polyketide	cytorhodin	Streptomyces sp. SCSIO 1666

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001683.1	0.42	Other	N-acyl serinol	Bacillus sp. 2_A_57_CT2
BGC0001940.1	0.29	Polyketide	pyxidicycline A, pyxidicycline B	Pyxidicoccus fallax
BGC0000993.1	0.21	NRP, Polyketide	FR901228	Chromobacterium violaceum
BGC0000119.1	0.20	Polyketide, Saccharide	7-deoxypactamycin	Streptomyces pactum
BGC0001728.1	0.19	NRP, Polyketide	paenilipoheptin	Paenibacillus polymyxa E681
BGC0001558.1	0.18	Polyketide	cosmomycin C	Streptomyces sp. CNT302
BGC0000118.1	0.18	Polyketide	pactamycin	Streptomyces pactum
BGC0001074.1	0.16	Saccharide, Polyketide	cosmomycin D	Streptomyces olindensis
BGC0001568.1	0.16	Polyketide	cytorhodin	Streptomyces sp. SCSIO 1666

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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c00003_NZ_CABK.. - Region 3 - ranthipeptide

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Location: 1,944,031 - 1,965,386 nt. (total: 21,356 nt) Show pHMM detection rules used

ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or YcaO or TIGR03882)))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000600.1	0.19	RiPP	thurincin H	Bacillus thuringiensis
BGC0000523.1	0.17	RiPP	lactocin S	Lactobacillus sakei
BGC0001579.1	0.17	RiPP	duramycin	Streptomyces cinnamoneus
BGC0000616.1	0.17	RiPP	amylocyclicin	Bacillus velezensis FZB42
BGC0000626.1	0.17	RiPP	thuricin	Bacillus thuringiensis
BGC0001210.1	0.16	RiPP	pseudomycoicidin	Bacillus pseudomycoides DSM 12442
BGC0000521.1	0.16	RiPP	lacticin 481	Lactococcus lactis subsp. lactis
BGC0000539.1	0.16	RiPP	nukacin ISK-1	Staphylococcus warneri
BGC0001779.1	0.16	RiPP	siamycin	Streptomyces nodosus
BGC0000599.1	0.16	RiPP	thuricin CD α, thuricin CD β	Bacillus thuringiensis

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000600.1	0.52	RiPP	thurincin H	Bacillus thuringiensis
BGC0000523.1	0.48	RiPP	lactocin S	Lactobacillus sakei
BGC0001579.1	0.48	RiPP	duramycin	Streptomyces cinnamoneus
BGC0000616.1	0.48	RiPP	amylocyclicin	Bacillus velezensis FZB42
BGC0000626.1	0.47	RiPP	thuricin	Bacillus thuringiensis
BGC0001210.1	0.47	RiPP	pseudomycoicidin	Bacillus pseudomycoides DSM 12442
BGC0000521.1	0.47	RiPP	lacticin 481	Lactococcus lactis subsp. lactis
BGC0000539.1	0.47	RiPP	nukacin ISK-1	Staphylococcus warneri
BGC0001779.1	0.46	RiPP	siamycin	Streptomyces nodosus
BGC0000599.1	0.46	RiPP	thuricin CD α, thuricin CD β	Bacillus thuringiensis

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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c00003_NZ_CABK.. - Region 4 - cyclic-lactone-autoinducer

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Location: 2,496,250 - 2,516,825 nt. (total: 20,576 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001361.1	0.23	Terpene	sodorifen	Serratia plymuthica 4Rx13
BGC0000488.1	0.20	RiPP	circularin A	Clostridium beijerinckii
BGC0000600.1	0.16	RiPP	thurincin H	Bacillus thuringiensis
BGC0000523.1	0.16	RiPP	lactocin S	Lactobacillus sakei
BGC0000521.1	0.16	RiPP	lacticin 481	Lactococcus lactis subsp. lactis
BGC0001210.1	0.16	RiPP	pseudomycoicidin	Bacillus pseudomycoides DSM 12442
BGC0001364.1	0.16	RiPP	cinnamycin B	Actinomadura atramentaria DSM 43919
BGC0000500.1	0.16	RiPP	carnolysin A1, carnolysin A2	Carnobacterium maltaromaticum
BGC0000489.1	0.16	RiPP	enterocin AS-48	Enterococcus faecalis
BGC0000561.1	0.16	RiPP	thermophilin 1277	Streptococcus thermophilus

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001361.1	0.57	Terpene	sodorifen	Serratia plymuthica 4Rx13
BGC0000488.1	0.52	RiPP	circularin A	Clostridium beijerinckii
BGC0000600.1	0.46	RiPP	thurincin H	Bacillus thuringiensis
BGC0000523.1	0.46	RiPP	lactocin S	Lactobacillus sakei
BGC0000521.1	0.46	RiPP	lacticin 481	Lactococcus lactis subsp. lactis
BGC0001210.1	0.46	RiPP	pseudomycoicidin	Bacillus pseudomycoides DSM 12442
BGC0001364.1	0.46	RiPP	cinnamycin B	Actinomadura atramentaria DSM 43919
BGC0000500.1	0.46	RiPP	carnolysin A1, carnolysin A2	Carnobacterium maltaromaticum
BGC0000489.1	0.46	RiPP	enterocin AS-48	Enterococcus faecalis
BGC0000561.1	0.46	RiPP	thermophilin 1277	Streptococcus thermophilus

Similar known gene clusters

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names