GCF_031202285.1_ASM3120228v1_genomic - 4 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NZ_CP101637.1

Region	Type	From	To
Region 1.1	cyclic-lactone-autoinducer	2,436,327	2,457,137
Region 1.2	ranthipeptide	2,465,366	2,487,024
Region 1.3	RRE-containing	3,818,648	3,837,509
Region 1.4	RRE-containing	3,877,627	3,900,658

Region	Type	From	To	Similarity
Region 1.1	cyclic-lactone-autoinducer	2,436,327	2,457,137
Region 1.2	ranthipeptide	2,465,366	2,487,024
Region 1.3	RRE-containing	3,818,648	3,837,509
Region 1.4	RRE-containing	3,877,627	3,900,658

No secondary metabolite regions were found in these records:: NZ_CP101638.1; NZ_CP101639.1

Compact view

NZ_CP101637.1 - Region 1 - cyclic-lactone-autoinducer

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Location: 2,436,327 - 2,457,137 nt. (total: 20,811 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001859.1	0.13	Other (Phosphonate)	fosfomycin	Pseudomonas syringae
BGC0001686.1	0.08	NRP	N-octanoyl-Met-Phe-H	Clostridium sp. CAG:567
BGC0000469.1	0.08	RiPP	bottromycin A2	Streptomyces sp. BC16019
BGC0001941.1	0.07	NRP, Polyketide	fulvuthiacene A, fulvuthiacene B	Myxococcus fulvus
BGC0001890.1	0.07	NRP	amphi-enterobactin 1, amphi-enterobactin 2, amphi-enterobactin 3, amphi-enterobactin 4	Vibrio campbellii ATCC BAA-1116
BGC0001945.1	0.04	NRP	chloromyxamide	Myxococcus sp.

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001859.1	0.42	Other (Phosphonate)	fosfomycin	Pseudomonas syringae
BGC0001686.1	0.30	NRP	N-octanoyl-Met-Phe-H	Clostridium sp. CAG:567
BGC0000469.1	0.30	RiPP	bottromycin A2	Streptomyces sp. BC16019
BGC0001941.1	0.29	NRP, Polyketide	fulvuthiacene A, fulvuthiacene B	Myxococcus fulvus
BGC0001890.1	0.28	NRP	amphi-enterobactin 1, amphi-enterobactin 2, amphi-enterobactin 3, amphi-enterobactin 4	Vibrio campbellii ATCC BAA-1116
BGC0001945.1	0.21	NRP	chloromyxamide	Myxococcus sp.

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NZ_CP101637.1 - Region 2 - ranthipeptide

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Location: 2,465,366 - 2,487,024 nt. (total: 21,659 nt) Show pHMM detection rules used

ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or YcaO or TIGR03882)))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001387.1	0.17	Other	nucleocidin	Streptomyces calvus
BGC0001887.1	0.14	RiPP	huazacin	Bacillus thuringiensis serovar huazhongensis BGSC 4BD1
BGC0001540.1	0.14	Other	CC-1065	Streptomyces zelensis
BGC0001120.1	0.13	NRP, Polyketide	burkholderic acid	Burkholderia thailandensis E264
BGC0001935.1	0.12	Other	3,7-dihydroxytropolone	Streptomyces cyaneofuscatus
BGC0001487.1	0.12	Other	3,7-dihydroxytropolone	Streptomyces cyaneofuscatus
BGC0000695.1	0.11	Saccharide	fortimicin	Micromonospora olivasterospora
BGC0001860.1	0.09	RiPP	thiomuracin	Thermobispora bispora DSM 43833
BGC0000613.1	0.09	RiPP	thiomuracin A	Nonomuraea sp. Bp3714-39
BGC0000604.1	0.08	RiPP	GE2270A	Nonomuraea sp. WU8817

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001387.1	0.48	Other	nucleocidin	Streptomyces calvus
BGC0001887.1	0.44	RiPP	huazacin	Bacillus thuringiensis serovar huazhongensis BGSC 4BD1
BGC0001540.1	0.43	Other	CC-1065	Streptomyces zelensis
BGC0001120.1	0.41	NRP, Polyketide	burkholderic acid	Burkholderia thailandensis E264
BGC0001935.1	0.39	Other	3,7-dihydroxytropolone	Streptomyces cyaneofuscatus
BGC0001487.1	0.39	Other	3,7-dihydroxytropolone	Streptomyces cyaneofuscatus
BGC0000695.1	0.37	Saccharide	fortimicin	Micromonospora olivasterospora
BGC0001860.1	0.33	RiPP	thiomuracin	Thermobispora bispora DSM 43833
BGC0000613.1	0.33	RiPP	thiomuracin A	Nonomuraea sp. Bp3714-39
BGC0000604.1	0.31	RiPP	GE2270A	Nonomuraea sp. WU8817

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NZ_CP101637.1 - Region 3 - RRE-containing

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Location: 3,818,648 - 3,837,509 nt. (total: 18,862 nt) Show pHMM detection rules used

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000938.1	0.16	Other (Aminocoumarin)	fosfomycin	Streptomyces fradiae
BGC0000294.1	0.16	NRP	acinetobactin	Acinetobacter baumannii
BGC0000551.1	0.16	RiPP	SapB	Streptomyces coelicolor A3(2)
BGC0000501.1	0.16	RiPP	catenulipeptin	Catenulispora acidiphila DSM 44928
BGC0000554.1	0.15	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0000513.1	0.15	RiPP	Ery-9, Ery-6, Ery-8, Ery-7, Ery-5, Ery-4, Ery-3	Saccharopolyspora erythraea NRRL 2338
BGC0001210.1	0.15	RiPP	pseudomycoicidin	Bacillus pseudomycoides DSM 12442
BGC0000487.1	0.15	RiPP	carnocyclin	Carnobacterium maltaromaticum
BGC0000906.1	0.14	Other	heme D1	Heliophilum fasciatum
BGC0001476.1	0.13	Other (Nucleoside)	pseudouridimycin	Streptomyces sp.

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000938.1	0.47	Other (Aminocoumarin)	fosfomycin	Streptomyces fradiae
BGC0000294.1	0.47	NRP	acinetobactin	Acinetobacter baumannii
BGC0000551.1	0.46	RiPP	SapB	Streptomyces coelicolor A3(2)
BGC0000501.1	0.46	RiPP	catenulipeptin	Catenulispora acidiphila DSM 44928
BGC0000554.1	0.46	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0000513.1	0.45	RiPP	Ery-9, Ery-6, Ery-8, Ery-7, Ery-5, Ery-4, Ery-3	Saccharopolyspora erythraea NRRL 2338
BGC0001210.1	0.45	RiPP	pseudomycoicidin	Bacillus pseudomycoides DSM 12442
BGC0000487.1	0.45	RiPP	carnocyclin	Carnobacterium maltaromaticum
BGC0000906.1	0.43	Other	heme D1	Heliophilum fasciatum
BGC0001476.1	0.42	Other (Nucleoside)	pseudouridimycin	Streptomyces sp.

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

NZ_CP101637.1 - Region 4 - RRE-containing

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Location: 3,877,627 - 3,900,658 nt. (total: 23,032 nt) Show pHMM detection rules used

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000782.1	0.21	Saccharide	O-antigen	Burkholderia pseudomallei 1026b
BGC0000786.1	0.20	Saccharide	O-antigen	Edwardsiella ictaluri 93-146
BGC0000790.1	0.19	Saccharide	O-antigen	Escherichia coli
BGC0000787.1	0.19	Saccharide	O-antigen	Escherichia coli
BGC0000760.1	0.19	Saccharide	emulsan	Acinetobacter venetianus RAG-1 = CIP 110063
BGC0000777.1	0.18	Saccharide	lipopolysaccharide	Escherichia coli
BGC0001655.1	0.17	RiPP	LP2006	Nocardiopsis alba DSM 43377
BGC0000761.1	0.17	Saccharide	exopolysaccharide	Methylobacillus sp. 12S
BGC0000916.1	0.16	Other	molybdenum cofactor	Staphylococcus carnosus
BGC0001863.1	0.16	RiPP, Terpene	bacillicn CER074	Bacillus mycoides

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000782.1	0.54	Saccharide	O-antigen	Burkholderia pseudomallei 1026b
BGC0000786.1	0.52	Saccharide	O-antigen	Edwardsiella ictaluri 93-146
BGC0000790.1	0.52	Saccharide	O-antigen	Escherichia coli
BGC0000787.1	0.51	Saccharide	O-antigen	Escherichia coli
BGC0000760.1	0.51	Saccharide	emulsan	Acinetobacter venetianus RAG-1 = CIP 110063
BGC0000777.1	0.50	Saccharide	lipopolysaccharide	Escherichia coli
BGC0001655.1	0.48	RiPP	LP2006	Nocardiopsis alba DSM 43377
BGC0000761.1	0.48	Saccharide	exopolysaccharide	Methylobacillus sp. 12S
BGC0000916.1	0.47	Other	molybdenum cofactor	Staphylococcus carnosus
BGC0001863.1	0.47	RiPP, Terpene	bacillicn CER074	Bacillus mycoides

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names