GCF_020138775.1_ASM2013877v1_genomic - 4 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NZ_CP075979.1

Region	Type	From	To
Region 1.1	RRE-containing	590,841	609,460
Region 1.2	cyclic-lactone-autoinducer	1,088,282	1,099,897
Region 1.3	cyclic-lactone-autoinducer	2,030,346	2,051,145
Region 1.4	ranthipeptide	2,440,643	2,462,226

Region	Type	From	To	Similarity
Region 1.1	RRE-containing	590,841	609,460
Region 1.2	cyclic-lactone-autoinducer	1,088,282	1,099,897
Region 1.3	cyclic-lactone-autoinducer	2,030,346	2,051,145
Region 1.4	ranthipeptide	2,440,643	2,462,226

No secondary metabolite regions were found in these records:: NZ_CP075980.1

Compact view

NZ_CP075979.1 - Region 1 - RRE-containing

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Location: 590,841 - 609,460 nt. (total: 18,620 nt) Show pHMM detection rules used

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000775.1	0.19	Saccharide	lipopolysaccharide	Legionella pneumophila
BGC0001526.1	0.18	Other	bartolosides E, bartolosides F, bartolosides G, bartolosides H, bartolosides I, bartolosides J, bartolosides K	Synechocystis salina LEGE 06099
BGC0001356.1	0.17	RiPP	paeninodin	Paenibacillus dendritiformis C454
BGC0001525.1	0.17	Other	bartoloside 2, bartoloside 3, bartoloside 4	Synechocystis salina LEGE 06155
BGC0000744.1	0.17	Saccharide	capsular polysaccharide	Streptococcus agalactiae
BGC0000748.1	0.17	Saccharide	capsular polysaccharide	Streptococcus agalactiae
BGC0000740.1	0.17	Saccharide	capsular polysaccharide	Streptococcus agalactiae
BGC0000745.1	0.17	Saccharide	capsular polysaccharide	Streptococcus agalactiae
BGC0000747.1	0.17	Saccharide	capsular polysaccharide	Streptococcus agalactiae
BGC0000746.1	0.17	Saccharide	capsular polysaccharide	Streptococcus agalactiae

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000775.1	0.51	Saccharide	lipopolysaccharide	Legionella pneumophila
BGC0001526.1	0.49	Other	bartolosides E, bartolosides F, bartolosides G, bartolosides H, bartolosides I, bartolosides J, bartolosides K	Synechocystis salina LEGE 06099
BGC0001356.1	0.49	RiPP	paeninodin	Paenibacillus dendritiformis C454
BGC0001525.1	0.48	Other	bartoloside 2, bartoloside 3, bartoloside 4	Synechocystis salina LEGE 06155
BGC0000744.1	0.48	Saccharide	capsular polysaccharide	Streptococcus agalactiae
BGC0000748.1	0.48	Saccharide	capsular polysaccharide	Streptococcus agalactiae
BGC0000740.1	0.48	Saccharide	capsular polysaccharide	Streptococcus agalactiae
BGC0000745.1	0.48	Saccharide	capsular polysaccharide	Streptococcus agalactiae
BGC0000747.1	0.48	Saccharide	capsular polysaccharide	Streptococcus agalactiae
BGC0000746.1	0.48	Saccharide	capsular polysaccharide	Streptococcus agalactiae

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NZ_CP075979.1 - Region 2 - cyclic-lactone-autoinducer

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Location: 1,088,282 - 1,099,897 nt. (total: 11,616 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

No matches found.

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

NZ_CP075979.1 - Region 3 - cyclic-lactone-autoinducer

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Location: 2,030,346 - 2,051,145 nt. (total: 20,800 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

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Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001586.1	0.15	Saccharide	EPS273	Pseudomonas stutzeri
BGC0000648.1	0.15	Terpene	carotenoid	Myxococcus xanthus
BGC0000645.1	0.11	Terpene	carotenoid	Halobacillus halophilus DSM 2266
BGC0001686.1	0.08	NRP	N-octanoyl-Met-Phe-H	Clostridium sp. CAG:567
BGC0001053.1	0.05	NRP, Polyketide	tubulysin A	Archangium disciforme

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001586.1	0.46	Saccharide	EPS273	Pseudomonas stutzeri
BGC0000648.1	0.46	Terpene	carotenoid	Myxococcus xanthus
BGC0000645.1	0.38	Terpene	carotenoid	Halobacillus halophilus DSM 2266
BGC0001686.1	0.31	NRP	N-octanoyl-Met-Phe-H	Clostridium sp. CAG:567
BGC0001053.1	0.23	NRP, Polyketide	tubulysin A	Archangium disciforme

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NZ_CP075979.1 - Region 4 - ranthipeptide

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Location: 2,440,643 - 2,462,226 nt. (total: 21,584 nt) Show pHMM detection rules used

ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or YcaO or TIGR03882)))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001891.1	0.22	Other	closthioamide	Ruminiclostridium cellulolyticum H10
BGC0001387.1	0.17	Other	nucleocidin	Streptomyces calvus
BGC0000599.1	0.17	RiPP	thuricin CD α, thuricin CD β	Bacillus thuringiensis
BGC0001591.1	0.09	Other	fatty acid enol ester	uncultured bacterium CSLC2
BGC0001688.1	0.09	Other	N-tetradecanoyl tyrosine	uncultured bacterium CSLC2
BGC0001155.1	0.09	RiPP	GE2270	Planobispora rosea
BGC0000027.1	0.08	Polyketide	ankaflavin, monascin, rubropunctatine, monascorubrin	Monascus pilosus
BGC0001089.1	0.05	Polyketide, NRP	bacillaene	Bacillus velezensis FZB42
BGC0000413.1	0.03	NRP	pyoverdin	Pseudomonas protegens Pf-5

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001891.1	0.55	Other	closthioamide	Ruminiclostridium cellulolyticum H10
BGC0001387.1	0.49	Other	nucleocidin	Streptomyces calvus
BGC0000599.1	0.49	RiPP	thuricin CD α, thuricin CD β	Bacillus thuringiensis
BGC0001591.1	0.33	Other	fatty acid enol ester	uncultured bacterium CSLC2
BGC0001688.1	0.33	Other	N-tetradecanoyl tyrosine	uncultured bacterium CSLC2
BGC0001155.1	0.32	RiPP	GE2270	Planobispora rosea
BGC0000027.1	0.30	Polyketide	ankaflavin, monascin, rubropunctatine, monascorubrin	Monascus pilosus
BGC0001089.1	0.23	Polyketide, NRP	bacillaene	Bacillus velezensis FZB42
BGC0000413.1	0.17	NRP	pyoverdin	Pseudomonas protegens Pf-5

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names