GCF_018885085.1_ASM1888508v1_genomic - 4 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NZ_CP076401.1

Region	Type	From	To
Region 1.1	NRPS	1,449,954	1,492,143
Region 1.2	ranthipeptide,cyclic-lactone-autoinducer	2,978,255	2,999,276
Region 1.3	ranthipeptide	3,053,252	3,073,395
Region 1.4	cyclic-lactone-autoinducer	3,727,268	3,748,048

Region	Type	From	To	Similarity
Region 1.1	NRPS	1,449,954	1,492,143
Region 1.2	ranthipeptide,cyclic-lactone-autoinducer	2,978,255	2,999,276
Region 1.3	ranthipeptide	3,053,252	3,073,395
Region 1.4	cyclic-lactone-autoinducer	3,727,268	3,748,048

No secondary metabolite regions were found in these records:: NZ_CP076402.1

Compact view

NZ_CP076401.1 - Region 1 - NRPS

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Location: 1,449,954 - 1,492,143 nt. (total: 42,190 nt) Show pHMM detection rules used

NRPS: cds(Condensation and (AMP-binding or A-OX))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000600.1	0.19	RiPP	thurincin H	Bacillus thuringiensis
BGC0000349.1	0.18	NRP	erythrochelin	Saccharopolyspora erythraea NRRL 2338
BGC0001479.1	0.18	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102
BGC0001844.1	0.18	NRP	holrhizin	Paraburkholderia rhizoxinica HKI 454
BGC0001135.1	0.18	NRP	bicornutin A1, bicornutin A2	Xenorhabdus budapestensis
BGC0001758.1	0.18	NRP	rhizomide A, rhizomide B, rhizomide C	Paraburkholderia rhizoxinica HKI 454
BGC0001131.1	0.18	NRP	ambactin	Xenorhabdus miraniensis
BGC0001767.1	0.18	NRP	salinichelins	Salinispora pacifica CNY331
BGC0001833.1	0.18	NRP	icosalide A, icosalide B	Burkholderia gladioli
BGC0001128.1	0.18	NRP	luminmide	Photorhabdus laumondii subsp. laumondii TTO1

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000600.1	0.51	RiPP	thurincin H	Bacillus thuringiensis
BGC0000349.1	0.50	NRP	erythrochelin	Saccharopolyspora erythraea NRRL 2338
BGC0001479.1	0.49	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102
BGC0001844.1	0.49	NRP	holrhizin	Paraburkholderia rhizoxinica HKI 454
BGC0001135.1	0.49	NRP	bicornutin A1, bicornutin A2	Xenorhabdus budapestensis
BGC0001758.1	0.49	NRP	rhizomide A, rhizomide B, rhizomide C	Paraburkholderia rhizoxinica HKI 454
BGC0001131.1	0.49	NRP	ambactin	Xenorhabdus miraniensis
BGC0001767.1	0.49	NRP	salinichelins	Salinispora pacifica CNY331
BGC0001833.1	0.49	NRP	icosalide A, icosalide B	Burkholderia gladioli
BGC0001128.1	0.49	NRP	luminmide	Photorhabdus laumondii subsp. laumondii TTO1

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NZ_CP076401.1 - Region 2 - cyclic-lactone-autoinducer,ranthipeptide

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Location: 2,978,255 - 2,999,276 nt. (total: 21,022 nt) Show pHMM detection rules used

ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or YcaO or TIGR03882)))
cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001387.1	0.36	Other	nucleocidin	Streptomyces calvus
BGC0001935.1	0.18	Other	3,7-dihydroxytropolone	Streptomyces cyaneofuscatus
BGC0001487.1	0.18	Other	3,7-dihydroxytropolone	Streptomyces cyaneofuscatus
BGC0001943.1	0.09	NRP	vioprolides A, vioprolides B, vioprolides C, vioprolides D	Cystobacter sp.
BGC0001822.1	0.09	NRP	vioprolide A	Cystobacter sp.
BGC0001704.1	0.09	Other	nocuolin A	Nodularia sp. HBU26
BGC0001591.1	0.09	Other	fatty acid enol ester	uncultured bacterium CSLC2
BGC0001688.1	0.09	Other	N-tetradecanoyl tyrosine	uncultured bacterium CSLC2
BGC0001358.1	0.08	Polyketide	leucinostatin A, leucinostatin B	Purpureocillium lilacinum
BGC0001703.1	0.08	Other	nocuolin A	Nostoc sp. CCAP 1453/38

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001387.1	0.50	Other	nucleocidin	Streptomyces calvus
BGC0001935.1	0.38	Other	3,7-dihydroxytropolone	Streptomyces cyaneofuscatus
BGC0001487.1	0.38	Other	3,7-dihydroxytropolone	Streptomyces cyaneofuscatus
BGC0001943.1	0.24	NRP	vioprolides A, vioprolides B, vioprolides C, vioprolides D	Cystobacter sp.
BGC0001822.1	0.24	NRP	vioprolide A	Cystobacter sp.
BGC0001591.1	0.23	Other	fatty acid enol ester	uncultured bacterium CSLC2
BGC0001688.1	0.23	Other	N-tetradecanoyl tyrosine	uncultured bacterium CSLC2
BGC0001704.1	0.22	Other	nocuolin A	Nodularia sp. HBU26
BGC0000027.1	0.22	Polyketide	ankaflavin, monascin, rubropunctatine, monascorubrin	Monascus pilosus
BGC0001358.1	0.20	Polyketide	leucinostatin A, leucinostatin B	Purpureocillium lilacinum

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NZ_CP076401.1 - Region 3 - ranthipeptide

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Location: 3,053,252 - 3,073,395 nt. (total: 20,144 nt) Show pHMM detection rules used

ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or YcaO or TIGR03882)))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

No matches found.

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

NZ_CP076401.1 - Region 4 - cyclic-lactone-autoinducer

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Location: 3,727,268 - 3,748,048 nt. (total: 20,781 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000484.1	0.21	RiPP	glycocin F	Lactobacillus plantarum
BGC0000488.1	0.17	RiPP	circularin A	Clostridium beijerinckii
BGC0000616.1	0.16	RiPP	amylocyclicin	Bacillus velezensis FZB42
BGC0000528.1	0.16	RiPP	michiganin A	Clavibacter michiganensis subsp. michiganensis NCPPB 382
BGC0000571.1	0.16	RiPP	burhizin	Paraburkholderia rhizoxinica HKI 454
BGC0000643.1	0.16	Terpene	carotenoid	Brevundimonas vesicularis
BGC0000522.1	0.16	RiPP	lacticin Z	Lactococcus lactis
BGC0000634.1	0.15	Terpene	carotenoid	Brevundimonas sp. SD212
BGC0001289.1	0.15	RiPP	penisin	Paenibacillus ehimensis
BGC0000500.1	0.15	RiPP	carnolysin A1, carnolysin A2	Carnobacterium maltaromaticum

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000484.1	0.54	RiPP	glycocin F	Lactobacillus plantarum
BGC0000488.1	0.49	RiPP	circularin A	Clostridium beijerinckii
BGC0000616.1	0.47	RiPP	amylocyclicin	Bacillus velezensis FZB42
BGC0000528.1	0.47	RiPP	michiganin A	Clavibacter michiganensis subsp. michiganensis NCPPB 382
BGC0000571.1	0.46	RiPP	burhizin	Paraburkholderia rhizoxinica HKI 454
BGC0000643.1	0.46	Terpene	carotenoid	Brevundimonas vesicularis
BGC0000522.1	0.46	RiPP	lacticin Z	Lactococcus lactis
BGC0000634.1	0.46	Terpene	carotenoid	Brevundimonas sp. SD212
BGC0001289.1	0.46	RiPP	penisin	Paenibacillus ehimensis
BGC0000500.1	0.46	RiPP	carnolysin A1, carnolysin A2	Carnobacterium maltaromaticum

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names