GCF_000577815.1_JCC_genomic - 4 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NZ_CBYM010000006 (original name was: NZ_CBYM010000006.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 6.1	cyclic-lactone-autoinducer	53,651	74,232

NZ_CBYM010000026 (original name was: NZ_CBYM010000026.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 26.1	ranthipeptide	31,018	46,609

NZ_CBYM010000037 (original name was: NZ_CBYM010000037.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 37.1	RRE-containing	8,493	28,822

NZ_CBYM010000076 (original name was: NZ_CBYM010000076.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 76.1	cyclic-lactone-autoinducer	1	3,220

Region	Type	From	To	Similarity
Region 6.1	cyclic-lactone-autoinducer	53,651	74,232
Region 26.1	ranthipeptide	31,018	46,609
Region 37.1	RRE-containing	8,493	28,822
Region 76.1	cyclic-lactone-autoinducer	1	3,220

No secondary metabolite regions were found in these records:: NZ_CBYM010000001 (original name was: NZ_CBYM010000001.1); NZ_CBYM010000002 (original name was: NZ_CBYM010000002.1); NZ_CBYM010000003 (original name was: NZ_CBYM010000003.1); NZ_CBYM010000004 (original name was: NZ_CBYM010000004.1); NZ_CBYM010000005 (original name was: NZ_CBYM010000005.1); NZ_CBYM010000007 (original name was: NZ_CBYM010000007.1); NZ_CBYM010000008 (original name was: NZ_CBYM010000008.1); NZ_CBYM010000009 (original name was: NZ_CBYM010000009.1); NZ_CBYM010000010 (original name was: NZ_CBYM010000010.1); NZ_CBYM010000011 (original name was: NZ_CBYM010000011.1); NZ_CBYM010000012 (original name was: NZ_CBYM010000012.1); NZ_CBYM010000013 (original name was: NZ_CBYM010000013.1); NZ_CBYM010000014 (original name was: NZ_CBYM010000014.1); NZ_CBYM010000015 (original name was: NZ_CBYM010000015.1); NZ_CBYM010000016 (original name was: NZ_CBYM010000016.1); NZ_CBYM010000017 (original name was: NZ_CBYM010000017.1); NZ_CBYM010000018 (original name was: NZ_CBYM010000018.1); NZ_CBYM010000019 (original name was: NZ_CBYM010000019.1); NZ_CBYM010000020 (original name was: NZ_CBYM010000020.1); NZ_CBYM010000021 (original name was: NZ_CBYM010000021.1); NZ_CBYM010000022 (original name was: NZ_CBYM010000022.1); NZ_CBYM010000023 (original name was: NZ_CBYM010000023.1); NZ_CBYM010000024 (original name was: NZ_CBYM010000024.1); NZ_CBYM010000025 (original name was: NZ_CBYM010000025.1); NZ_CBYM010000027 (original name was: NZ_CBYM010000027.1); NZ_CBYM010000028 (original name was: NZ_CBYM010000028.1); NZ_CBYM010000029 (original name was: NZ_CBYM010000029.1); NZ_CBYM010000030 (original name was: NZ_CBYM010000030.1); NZ_CBYM010000031 (original name was: NZ_CBYM010000031.1); NZ_CBYM010000032 (original name was: NZ_CBYM010000032.1); NZ_CBYM010000033 (original name was: NZ_CBYM010000033.1); NZ_CBYM010000034 (original name was: NZ_CBYM010000034.1); NZ_CBYM010000035 (original name was: NZ_CBYM010000035.1); NZ_CBYM010000036 (original name was: NZ_CBYM010000036.1); NZ_CBYM010000038 (original name was: NZ_CBYM010000038.1); NZ_CBYM010000039 (original name was: NZ_CBYM010000039.1); NZ_CBYM010000040 (original name was: NZ_CBYM010000040.1); NZ_CBYM010000041 (original name was: NZ_CBYM010000041.1); NZ_CBYM010000042 (original name was: NZ_CBYM010000042.1); NZ_CBYM010000043 (original name was: NZ_CBYM010000043.1); NZ_CBYM010000044 (original name was: NZ_CBYM010000044.1); NZ_CBYM010000045 (original name was: NZ_CBYM010000045.1); NZ_CBYM010000046 (original name was: NZ_CBYM010000046.1); NZ_CBYM010000047 (original name was: NZ_CBYM010000047.1); NZ_CBYM010000048 (original name was: NZ_CBYM010000048.1); NZ_CBYM010000049 (original name was: NZ_CBYM010000049.1); NZ_CBYM010000050 (original name was: NZ_CBYM010000050.1); NZ_CBYM010000051 (original name was: NZ_CBYM010000051.1); NZ_CBYM010000052 (original name was: NZ_CBYM010000052.1); NZ_CBYM010000053 (original name was: NZ_CBYM010000053.1); NZ_CBYM010000054 (original name was: NZ_CBYM010000054.1); NZ_CBYM010000055 (original name was: NZ_CBYM010000055.1); NZ_CBYM010000056 (original name was: NZ_CBYM010000056.1); NZ_CBYM010000057 (original name was: NZ_CBYM010000057.1); NZ_CBYM010000058 (original name was: NZ_CBYM010000058.1); NZ_CBYM010000059 (original name was: NZ_CBYM010000059.1); NZ_CBYM010000060 (original name was: NZ_CBYM010000060.1); NZ_CBYM010000061 (original name was: NZ_CBYM010000061.1); NZ_CBYM010000062 (original name was: NZ_CBYM010000062.1); NZ_CBYM010000063 (original name was: NZ_CBYM010000063.1); NZ_CBYM010000064 (original name was: NZ_CBYM010000064.1); NZ_CBYM010000065 (original name was: NZ_CBYM010000065.1); NZ_CBYM010000066 (original name was: NZ_CBYM010000066.1); NZ_CBYM010000067 (original name was: NZ_CBYM010000067.1); NZ_CBYM010000068 (original name was: NZ_CBYM010000068.1); NZ_CBYM010000069 (original name was: NZ_CBYM010000069.1); NZ_CBYM010000070 (original name was: NZ_CBYM010000070.1); NZ_CBYM010000071 (original name was: NZ_CBYM010000071.1); NZ_CBYM010000072 (original name was: NZ_CBYM010000072.1); NZ_CBYM010000073 (original name was: NZ_CBYM010000073.1); NZ_CBYM010000074 (original name was: NZ_CBYM010000074.1); NZ_CBYM010000075 (original name was: NZ_CBYM010000075.1); NZ_CBYM010000077 (original name was: NZ_CBYM010000077.1); NZ_CBYM010000078 (original name was: NZ_CBYM010000078.1); NZ_CBYM010000079 (original name was: NZ_CBYM010000079.1); NZ_CBYM010000080 (original name was: NZ_CBYM010000080.1); NZ_CBYM010000081 (original name was: NZ_CBYM010000081.1); NZ_CBYM010000082 (original name was: NZ_CBYM010000082.1); NZ_CBYM010000083 (original name was: NZ_CBYM010000083.1); NZ_CBYM010000084 (original name was: NZ_CBYM010000084.1); NZ_CBYM010000085 (original name was: NZ_CBYM010000085.1); NZ_CBYM010000086 (original name was: NZ_CBYM010000086.1); NZ_CBYM010000087 (original name was: NZ_CBYM010000087.1); NZ_CBYM010000088 (original name was: NZ_CBYM010000088.1)

Compact view

c00006_NZ_CBYM.. - Region 1 - cyclic-lactone-autoinducer

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Location: 53,651 - 74,232 nt. (total: 20,582 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000792.1	0.14	Saccharide	polysaccharide	Enterococcus faecalis OG1RF
BGC0000784.1	0.13	Saccharide	O-antigen	Pseudomonas aeruginosa
BGC0000775.1	0.13	Saccharide	lipopolysaccharide	Legionella pneumophila
BGC0000488.1	0.11	RiPP	circularin A	Clostridium beijerinckii
BGC0001298.1	0.05	Polyketide	4-Z-annimycin	Streptomyces calvus
BGC0001302.1	0.04	Other	lomofungin	Streptomyces lomondensis
BGC0001177.1	0.04	Polyketide	mensacaricin	Streptomyces bottropensis
BGC0000337.1	0.03	NRP	destruxin A	Metarhizium robertsii ARSEF 23

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000792.1	0.44	Saccharide	polysaccharide	Enterococcus faecalis OG1RF
BGC0000784.1	0.42	Saccharide	O-antigen	Pseudomonas aeruginosa
BGC0000775.1	0.41	Saccharide	lipopolysaccharide	Legionella pneumophila
BGC0000488.1	0.38	RiPP	circularin A	Clostridium beijerinckii
BGC0001298.1	0.21	Polyketide	4-Z-annimycin	Streptomyces calvus
BGC0001302.1	0.19	Other	lomofungin	Streptomyces lomondensis
BGC0001177.1	0.18	Polyketide	mensacaricin	Streptomyces bottropensis
BGC0000337.1	0.16	NRP	destruxin A	Metarhizium robertsii ARSEF 23

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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c00026_NZ_CBYM.. - Region 1 - ranthipeptide

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Location: 31,018 - 46,609 nt. (total: 15,592 nt) Show pHMM detection rules used

Region on contig edge.

ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or YcaO or TIGR03882)))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000550.1	0.16	RiPP	salivaricin G32	Streptococcus salivarius
BGC0000622.1	0.15	RiPP	megacin	Bacillus megaterium
BGC0000883.1	0.14	Other	arginomycin	Streptomyces arginensis
BGC0000774.1	0.14	Saccharide	lipopolysaccharide	Xanthomonas campestris pv. campestris
BGC0000928.1	0.14	Other	T3 toxin	Cylindrospermopsis raciborskii T3
BGC0000188.1	0.14	Alkaloid	saxitoxin, neosaxitoxin, decarbamoylsaxitoxin, gonyautoxin 3, gonyautoxin 2	Cylindrospermopsis raciborskii T3
BGC0000043.1	0.12	Polyketide	curacin A	Moorea producens 19L
BGC0000547.1	0.12	RiPP	salivaricin 9	Streptococcus salivarius
BGC0000527.1	0.11	RiPP	mersacidin	Bacillus sp. HIL-Y85/54728
BGC0000506.1	0.10	RiPP	entianin	Bacillus subtilis subsp. spizizenii

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000550.1	0.46	RiPP	salivaricin G32	Streptococcus salivarius
BGC0000622.1	0.44	RiPP	megacin	Bacillus megaterium
BGC0000883.1	0.44	Other	arginomycin	Streptomyces arginensis
BGC0000774.1	0.43	Saccharide	lipopolysaccharide	Xanthomonas campestris pv. campestris
BGC0000928.1	0.43	Other	T3 toxin	Cylindrospermopsis raciborskii T3
BGC0000188.1	0.43	Alkaloid	saxitoxin, neosaxitoxin, decarbamoylsaxitoxin, gonyautoxin 3, gonyautoxin 2	Cylindrospermopsis raciborskii T3
BGC0000043.1	0.39	Polyketide	curacin A	Moorea producens 19L
BGC0000547.1	0.39	RiPP	salivaricin 9	Streptococcus salivarius
BGC0000527.1	0.38	RiPP	mersacidin	Bacillus sp. HIL-Y85/54728
BGC0000506.1	0.36	RiPP	entianin	Bacillus subtilis subsp. spizizenii

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

c00037_NZ_CBYM.. - Region 1 - RRE-containing

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Location: 8,493 - 28,822 nt. (total: 20,330 nt) Show pHMM detection rules used

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001634.1	0.19	RiPP	keywimysin	Streptomyces sp. NRRL F-5702
BGC0001356.1	0.17	RiPP	paeninodin	Paenibacillus dendritiformis C454
BGC0000294.1	0.16	NRP	acinetobactin	Acinetobacter baumannii
BGC0000558.1	0.16	RiPP	sublancin 168	Bacillus subtilis subsp. subtilis str. 168
BGC0001654.1	0.16	Saccharide	lipooligosaccharide	Bacteroides thetaiotaomicron VPI-5482
BGC0000584.1	0.15	RiPP	colicin V	Escherichia coli
BGC0000486.1	0.15	RiPP	butyrivibriocin AR10	Butyrivibrio fibrisolvens
BGC0000592.1	0.15	RiPP	microviridin B	Microcystis aeruginosa NIES-298
BGC0000386.1	0.15	NRP	malleobactin A, malleobactin B, malleobactin C, malleobactin D	Burkholderia thailandensis E264
BGC0002005.1	0.15	RiPP	RaxX	Xanthomonas oryzae pv. oryzae

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001634.1	0.51	RiPP	keywimysin	Streptomyces sp. NRRL F-5702
BGC0001356.1	0.48	RiPP	paeninodin	Paenibacillus dendritiformis C454
BGC0000294.1	0.46	NRP	acinetobactin	Acinetobacter baumannii
BGC0000558.1	0.46	RiPP	sublancin 168	Bacillus subtilis subsp. subtilis str. 168
BGC0001654.1	0.46	Saccharide	lipooligosaccharide	Bacteroides thetaiotaomicron VPI-5482
BGC0000584.1	0.46	RiPP	colicin V	Escherichia coli
BGC0000486.1	0.46	RiPP	butyrivibriocin AR10	Butyrivibrio fibrisolvens
BGC0000592.1	0.45	RiPP	microviridin B	Microcystis aeruginosa NIES-298
BGC0000386.1	0.45	NRP	malleobactin A, malleobactin B, malleobactin C, malleobactin D	Burkholderia thailandensis E264
BGC0002005.1	0.45	RiPP	RaxX	Xanthomonas oryzae pv. oryzae

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names

c00076_NZ_CBYM.. - Region 1 - cyclic-lactone-autoinducer

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Location: 1 - 3,220 nt. (total: 3,220 nt) Show pHMM detection rules used

Region on contig edge.

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

Similar gene clusters

Analysis type:

No matches found.

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names