Select genomic region:
Overview
6.1
26.1
37.1
76.1

### Identified secondary metabolite regions using strictness 'relaxed'

NZ_CBYM010000006 (original name was: NZ_CBYM010000006.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 6.1 | cyclic-lactone-autoinducer | 53,651 | 74,232 |

NZ_CBYM010000026 (original name was: NZ_CBYM010000026.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 26.1 | ranthipeptide | 31,018 | 46,609 |

NZ_CBYM010000037 (original name was: NZ_CBYM010000037.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 37.1 | RRE-containing | 8,493 | 28,822 |

NZ_CBYM010000076 (original name was: NZ_CBYM010000076.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 76.1 | cyclic-lactone-autoinducer | 1 | 3,220 |

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 6.1 | cyclic-lactone-autoinducer | 53,651 | 74,232 |
Region 26.1 | ranthipeptide | 31,018 | 46,609 |
Region 37.1 | RRE-containing | 8,493 | 28,822 |
Region 76.1 | cyclic-lactone-autoinducer | 1 | 3,220 |

No secondary metabolite regions were found in these records:
  NZ_CBYM010000001 (original name was: NZ_CBYM010000001.1)
  NZ_CBYM010000002 (original name was: NZ_CBYM010000002.1)
  NZ_CBYM010000003 (original name was: NZ_CBYM010000003.1)
  NZ_CBYM010000004 (original name was: NZ_CBYM010000004.1)
  NZ_CBYM010000005 (original name was: NZ_CBYM010000005.1)
  NZ_CBYM010000007 (original name was: NZ_CBYM010000007.1)
  NZ_CBYM010000008 (original name was: NZ_CBYM010000008.1)
  NZ_CBYM010000009 (original name was: NZ_CBYM010000009.1)
  NZ_CBYM010000010 (original name was: NZ_CBYM010000010.1)
  NZ_CBYM010000011 (original name was: NZ_CBYM010000011.1)
  NZ_CBYM010000012 (original name was: NZ_CBYM010000012.1)
  NZ_CBYM010000013 (original name was: NZ_CBYM010000013.1)
  NZ_CBYM010000014 (original name was: NZ_CBYM010000014.1)
  NZ_CBYM010000015 (original name was: NZ_CBYM010000015.1)
  NZ_CBYM010000016 (original name was: NZ_CBYM010000016.1)
  NZ_CBYM010000017 (original name was: NZ_CBYM010000017.1)
  NZ_CBYM010000018 (original name was: NZ_CBYM010000018.1)
  NZ_CBYM010000019 (original name was: NZ_CBYM010000019.1)
  NZ_CBYM010000020 (original name was: NZ_CBYM010000020.1)
  NZ_CBYM010000021 (original name was: NZ_CBYM010000021.1)
  NZ_CBYM010000022 (original name was: NZ_CBYM010000022.1)
  NZ_CBYM010000023 (original name was: NZ_CBYM010000023.1)
  NZ_CBYM010000024 (original name was: NZ_CBYM010000024.1)
  NZ_CBYM010000025 (original name was: NZ_CBYM010000025.1)
  NZ_CBYM010000027 (original name was: NZ_CBYM010000027.1)
  NZ_CBYM010000028 (original name was: NZ_CBYM010000028.1)
  NZ_CBYM010000029 (original name was: NZ_CBYM010000029.1)
  NZ_CBYM010000030 (original name was: NZ_CBYM010000030.1)
  NZ_CBYM010000031 (original name was: NZ_CBYM010000031.1)
  NZ_CBYM010000032 (original name was: NZ_CBYM010000032.1)
  NZ_CBYM010000033 (original name was: NZ_CBYM010000033.1)
  NZ_CBYM010000034 (original name was: NZ_CBYM010000034.1)
  NZ_CBYM010000035 (original name was: NZ_CBYM010000035.1)
  NZ_CBYM010000036 (original name was: NZ_CBYM010000036.1)
  NZ_CBYM010000038 (original name was: NZ_CBYM010000038.1)
  NZ_CBYM010000039 (original name was: NZ_CBYM010000039.1)
  NZ_CBYM010000040 (original name was: NZ_CBYM010000040.1)
  NZ_CBYM010000041 (original name was: NZ_CBYM010000041.1)
  NZ_CBYM010000042 (original name was: NZ_CBYM010000042.1)
  NZ_CBYM010000043 (original name was: NZ_CBYM010000043.1)
  NZ_CBYM010000044 (original name was: NZ_CBYM010000044.1)
  NZ_CBYM010000045 (original name was: NZ_CBYM010000045.1)
  NZ_CBYM010000046 (original name was: NZ_CBYM010000046.1)
  NZ_CBYM010000047 (original name was: NZ_CBYM010000047.1)
  NZ_CBYM010000048 (original name was: NZ_CBYM010000048.1)
  NZ_CBYM010000049 (original name was: NZ_CBYM010000049.1)
  NZ_CBYM010000050 (original name was: NZ_CBYM010000050.1)
  NZ_CBYM010000051 (original name was: NZ_CBYM010000051.1)
  NZ_CBYM010000052 (original name was: NZ_CBYM010000052.1)
  NZ_CBYM010000053 (original name was: NZ_CBYM010000053.1)
  NZ_CBYM010000054 (original name was: NZ_CBYM010000054.1)
  NZ_CBYM010000055 (original name was: NZ_CBYM010000055.1)
  NZ_CBYM010000056 (original name was: NZ_CBYM010000056.1)
  NZ_CBYM010000057 (original name was: NZ_CBYM010000057.1)
  NZ_CBYM010000058 (original name was: NZ_CBYM010000058.1)
  NZ_CBYM010000059 (original name was: NZ_CBYM010000059.1)
  NZ_CBYM010000060 (original name was: NZ_CBYM010000060.1)
  NZ_CBYM010000061 (original name was: NZ_CBYM010000061.1)
  NZ_CBYM010000062 (original name was: NZ_CBYM010000062.1)
  NZ_CBYM010000063 (original name was: NZ_CBYM010000063.1)
  NZ_CBYM010000064 (original name was: NZ_CBYM010000064.1)
  NZ_CBYM010000065 (original name was: NZ_CBYM010000065.1)
  NZ_CBYM010000066 (original name was: NZ_CBYM010000066.1)
  NZ_CBYM010000067 (original name was: NZ_CBYM010000067.1)
  NZ_CBYM010000068 (original name was: NZ_CBYM010000068.1)
  NZ_CBYM010000069 (original name was: NZ_CBYM010000069.1)
  NZ_CBYM010000070 (original name was: NZ_CBYM010000070.1)
  NZ_CBYM010000071 (original name was: NZ_CBYM010000071.1)
  NZ_CBYM010000072 (original name was: NZ_CBYM010000072.1)
  NZ_CBYM010000073 (original name was: NZ_CBYM010000073.1)
  NZ_CBYM010000074 (original name was: NZ_CBYM010000074.1)
  NZ_CBYM010000075 (original name was: NZ_CBYM010000075.1)
  NZ_CBYM010000077 (original name was: NZ_CBYM010000077.1)
  NZ_CBYM010000078 (original name was: NZ_CBYM010000078.1)
  NZ_CBYM010000079 (original name was: NZ_CBYM010000079.1)
  NZ_CBYM010000080 (original name was: NZ_CBYM010000080.1)
  NZ_CBYM010000081 (original name was: NZ_CBYM010000081.1)
  NZ_CBYM010000082 (original name was: NZ_CBYM010000082.1)
  NZ_CBYM010000083 (original name was: NZ_CBYM010000083.1)
  NZ_CBYM010000084 (original name was: NZ_CBYM010000084.1)
  NZ_CBYM010000085 (original name was: NZ_CBYM010000085.1)
  NZ_CBYM010000086 (original name was: NZ_CBYM010000086.1)
  NZ_CBYM010000087 (original name was: NZ_CBYM010000087.1)
  NZ_CBYM010000088 (original name was: NZ_CBYM010000088.1)

Compact view
c00006_NZ_CBYM.. - Region 1 - cyclic-lactone-autoinducer
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 53,651 - 74,232 nt. (total: 20,582 nt) Show pHMM detection rules used
cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | cyclic-lactone-autoinducer | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000792.1 |  | 0.14 | Saccharide | polysaccharide | Enterococcus faecalis OG1RF
BGC0000784.1 |  | 0.13 | Saccharide | O-antigen | Pseudomonas aeruginosa
BGC0000775.1 |  | 0.13 | Saccharide | lipopolysaccharide | Legionella pneumophila
BGC0000488.1 |  | 0.11 | RiPP | circularin A | Clostridium beijerinckii
BGC0001298.1 |  | 0.05 | Polyketide | 4-Z-annimycin | Streptomyces calvus
BGC0001302.1 |  | 0.04 | Other | lomofungin | Streptomyces lomondensis
BGC0001177.1 |  | 0.04 | Polyketide | mensacaricin | Streptomyces bottropensis
BGC0000337.1 |  | 0.03 | NRP | destruxin A | Metarhizium robertsii ARSEF 23

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000792.1 |  | 0.44 | Saccharide | polysaccharide | Enterococcus faecalis OG1RF
BGC0000784.1 |  | 0.42 | Saccharide | O-antigen | Pseudomonas aeruginosa
BGC0000775.1 |  | 0.41 | Saccharide | lipopolysaccharide | Legionella pneumophila
BGC0000488.1 |  | 0.38 | RiPP | circularin A | Clostridium beijerinckii
BGC0001298.1 |  | 0.21 | Polyketide | 4-Z-annimycin | Streptomyces calvus
BGC0001302.1 |  | 0.19 | Other | lomofungin | Streptomyces lomondensis
BGC0001177.1 |  | 0.18 | Polyketide | mensacaricin | Streptomyces bottropensis
BGC0000337.1 |  | 0.16 | NRP | destruxin A | Metarhizium robertsii ARSEF 23

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
c00026_NZ_CBYM.. - Region 1 - ranthipeptide
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 31,018 - 46,609 nt. (total: 15,592 nt) Show pHMM detection rules used
Region on contig edge.
ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or YcaO or TIGR03882)))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
TIGRFAM domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | ranthipeptide | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000550.1 |  | 0.16 | RiPP | salivaricin G32 | Streptococcus salivarius
BGC0000622.1 |  | 0.15 | RiPP | megacin | Bacillus megaterium
BGC0000883.1 |  | 0.14 | Other | arginomycin | Streptomyces arginensis
BGC0000774.1 |  | 0.14 | Saccharide | lipopolysaccharide | Xanthomonas campestris pv. campestris
BGC0000928.1 |  | 0.14 | Other | T3 toxin | Cylindrospermopsis raciborskii T3
BGC0000188.1 |  | 0.14 | Alkaloid | saxitoxin, neosaxitoxin, decarbamoylsaxitoxin, gonyautoxin 3, gonyautoxin 2 | Cylindrospermopsis raciborskii T3
BGC0000043.1 |  | 0.12 | Polyketide | curacin A | Moorea producens 19L
BGC0000547.1 |  | 0.12 | RiPP | salivaricin 9 | Streptococcus salivarius
BGC0000527.1 |  | 0.11 | RiPP | mersacidin | Bacillus sp. HIL-Y85/54728
BGC0000506.1 |  | 0.10 | RiPP | entianin | Bacillus subtilis subsp. spizizenii

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0000550.1 |  | 0.46 | RiPP | salivaricin G32 | Streptococcus salivarius
BGC0000622.1 |  | 0.44 | RiPP | megacin | Bacillus megaterium
BGC0000883.1 |  | 0.44 | Other | arginomycin | Streptomyces arginensis
BGC0000774.1 |  | 0.43 | Saccharide | lipopolysaccharide | Xanthomonas campestris pv. campestris
BGC0000928.1 |  | 0.43 | Other | T3 toxin | Cylindrospermopsis raciborskii T3
BGC0000188.1 |  | 0.43 | Alkaloid | saxitoxin, neosaxitoxin, decarbamoylsaxitoxin, gonyautoxin 3, gonyautoxin 2 | Cylindrospermopsis raciborskii T3
BGC0000043.1 |  | 0.39 | Polyketide | curacin A | Moorea producens 19L
BGC0000547.1 |  | 0.39 | RiPP | salivaricin 9 | Streptococcus salivarius
BGC0000527.1 |  | 0.38 | RiPP | mersacidin | Bacillus sp. HIL-Y85/54728
BGC0000506.1 |  | 0.36 | RiPP | entianin | Bacillus subtilis subsp. spizizenii

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
Detailed TIGRFAM domain annotation
Shows TIGRFAM domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description.
Selected features only
Expand to show all names
c00037_NZ_CBYM.. - Region 1 - RRE-containing
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 8,493 - 28,822 nt. (total: 20,330 nt) Show pHMM detection rules used
RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

Reference | RRE-containing | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001634.1 |  | 0.19 | RiPP | keywimysin | Streptomyces sp. NRRL F-5702
BGC0001356.1 |  | 0.17 | RiPP | paeninodin | Paenibacillus dendritiformis C454
BGC0000294.1 |  | 0.16 | NRP | acinetobactin | Acinetobacter baumannii
BGC0000558.1 |  | 0.16 | RiPP | sublancin 168 | Bacillus subtilis subsp. subtilis str. 168
BGC0001654.1 |  | 0.16 | Saccharide | lipooligosaccharide | Bacteroides thetaiotaomicron VPI-5482
BGC0000584.1 |  | 0.15 | RiPP | colicin V | Escherichia coli
BGC0000486.1 |  | 0.15 | RiPP | butyrivibriocin AR10 | Butyrivibrio fibrisolvens
BGC0000592.1 |  | 0.15 | RiPP | microviridin B | Microcystis aeruginosa NIES-298
BGC0000386.1 |  | 0.15 | NRP | malleobactin A, malleobactin B, malleobactin C, malleobactin D | Burkholderia thailandensis E264
BGC0002005.1 |  | 0.15 | RiPP | RaxX | Xanthomonas oryzae pv. oryzae

Reference | Aggregated | Similarity score | Type | Compound(s) | Organism
--- | --- | --- | --- | --- | ---
BGC0001634.1 |  | 0.51 | RiPP | keywimysin | Streptomyces sp. NRRL F-5702
BGC0001356.1 |  | 0.48 | RiPP | paeninodin | Paenibacillus dendritiformis C454
BGC0000294.1 |  | 0.46 | NRP | acinetobactin | Acinetobacter baumannii
BGC0000558.1 |  | 0.46 | RiPP | sublancin 168 | Bacillus subtilis subsp. subtilis str. 168
BGC0001654.1 |  | 0.46 | Saccharide | lipooligosaccharide | Bacteroides thetaiotaomicron VPI-5482
BGC0000584.1 |  | 0.46 | RiPP | colicin V | Escherichia coli
BGC0000486.1 |  | 0.46 | RiPP | butyrivibriocin AR10 | Butyrivibrio fibrisolvens
BGC0000592.1 |  | 0.45 | RiPP | microviridin B | Microcystis aeruginosa NIES-298
BGC0000386.1 |  | 0.45 | NRP | malleobactin A, malleobactin B, malleobactin C, malleobactin D | Burkholderia thailandensis E264
BGC0002005.1 |  | 0.45 | RiPP | RaxX | Xanthomonas oryzae pv. oryzae

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names
c00076_NZ_CBYM.. - Region 1 - cyclic-lactone-autoinducer
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1 - 3,220 nt. (total: 3,220 nt) Show pHMM detection rules used
Region on contig edge.
cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
MIBiG comparison
KnownClusterBlast
Pfam domains
Similar gene clusters
Shows careas that are similar to the current region to a reference database.
Mouseover a score cell in the table to get a breakdown of how the score was calculated.The MIBiG database.
Click on an accession to open that entry in the MIBiG database.
Analysis type:

No matches found.

No matches found.

Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Detailed Pfam domain annotation
Shows Pfam domains found in each gene within the region. Click on each domain for more information about the domain's accession, location, and description. Domains with a bold border have Gene Ontology information.
Selected features only
Expand to show all names