GCF_000468955.1_ASM46895v1_genomic - 4 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NC_022369.1

Region	Type	From	To
Region 1	betalactone	583,745	616,311
Region 2	RiPP-like	836,007	848,241
Region 3	T3PKS	1,592,230	1,633,384
Region 4	RaS-RiPP	2,278,290	2,302,783

NC_022369.1 - Region 1 - betalactone

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Location: 583,745 - 616,311 nt. (total: 32,567 nt) Show pHMM detection rules used

betalactone: (HMGL-like and AMP-binding)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001521.1	0.17	NRP	auriculamide	Herpetosiphon aurantiacus DSM 785
BGC0000554.1	0.16	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0000563.1	0.16	RiPP	venezuelin	Streptomyces venezuelae ATCC 10712
BGC0000513.1	0.16	RiPP	Ery-9, Ery-6, Ery-8, Ery-7, Ery-5, Ery-4, Ery-3	Saccharopolyspora erythraea NRRL 2338
BGC0001579.1	0.16	RiPP	duramycin	Streptomyces cinnamoneus
BGC0000501.1	0.16	RiPP	catenulipeptin	Catenulispora acidiphila DSM 44928
BGC0001494.1	0.15	RiPP	acinetodin	Acinetobacter gyllenbergii CIP 110306
BGC0000571.1	0.15	RiPP	burhizin	Paraburkholderia rhizoxinica HKI 454
BGC0000558.1	0.15	RiPP	sublancin 168	Bacillus subtilis subsp. subtilis str. 168
BGC0000617.1	0.15	RiPP	coagulin	Bacillus coagulans

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001521.1	0.48	NRP	auriculamide	Herpetosiphon aurantiacus DSM 785
BGC0000554.1	0.47	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0000563.1	0.46	RiPP	venezuelin	Streptomyces venezuelae ATCC 10712
BGC0000513.1	0.46	RiPP	Ery-9, Ery-6, Ery-8, Ery-7, Ery-5, Ery-4, Ery-3	Saccharopolyspora erythraea NRRL 2338
BGC0001579.1	0.46	RiPP	duramycin	Streptomyces cinnamoneus
BGC0000501.1	0.46	RiPP	catenulipeptin	Catenulispora acidiphila DSM 44928
BGC0001494.1	0.46	RiPP	acinetodin	Acinetobacter gyllenbergii CIP 110306
BGC0000571.1	0.46	RiPP	burhizin	Paraburkholderia rhizoxinica HKI 454
BGC0000558.1	0.46	RiPP	sublancin 168	Bacillus subtilis subsp. subtilis str. 168
BGC0000617.1	0.46	RiPP	coagulin	Bacillus coagulans

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NC_022369.1 - Region 2 - RiPP-like

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Location: 836,007 - 848,241 nt. (total: 12,235 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000617.1	0.19	RiPP	coagulin	Bacillus coagulans
BGC0000584.1	0.15	RiPP	colicin V	Escherichia coli
BGC0002009.1	0.14	Polyketide	kanglemycin A, kanglemycin V1, kanglemycin V2	Amycolatopsis vancoresmycina
BGC0000768.1	0.14	Saccharide	gellan polysaccharide	Sphingomonas elodea ATCC 31461
BGC0000619.1	0.14	RiPP	gassericin T	Lactobacillus gasseri
BGC0001602.1	0.14	RiPP	gassericin-T	Lactobacillus gasseri
BGC0001388.1	0.14	RiPP	gassericin E	Lactobacillus gasseri
BGC0000797.1	0.14	Saccharide	sphingan polysaccharide	Sphingomonas sp. S88
BGC0001928.1	0.14	Other	(2R,3S,4S)-5-fluoro-2,3,4-trihydroxypentanoic acid	Streptomyces sp. MA37
BGC0000759.1	0.14	Saccharide	diutan polysaccharide	Sphingomonas sp. ATCC 53159

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000617.1	0.51	RiPP	coagulin	Bacillus coagulans
BGC0000584.1	0.45	RiPP	colicin V	Escherichia coli
BGC0002009.1	0.44	Polyketide	kanglemycin A, kanglemycin V1, kanglemycin V2	Amycolatopsis vancoresmycina
BGC0000768.1	0.43	Saccharide	gellan polysaccharide	Sphingomonas elodea ATCC 31461
BGC0000619.1	0.43	RiPP	gassericin T	Lactobacillus gasseri
BGC0001602.1	0.43	RiPP	gassericin-T	Lactobacillus gasseri
BGC0001388.1	0.43	RiPP	gassericin E	Lactobacillus gasseri
BGC0000797.1	0.43	Saccharide	sphingan polysaccharide	Sphingomonas sp. S88
BGC0001928.1	0.43	Other	(2R,3S,4S)-5-fluoro-2,3,4-trihydroxypentanoic acid	Streptomyces sp. MA37
BGC0000759.1	0.43	Saccharide	diutan polysaccharide	Sphingomonas sp. ATCC 53159

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NC_022369.1 - Region 3 - T3PKS

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Location: 1,592,230 - 1,633,384 nt. (total: 41,155 nt) Show pHMM detection rules used

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000286.1	0.23	Polyketide	viguiepinol	Streptomyces sp. KO-3988
BGC0000764.1	0.19	Saccharide	exopolysaccharide	Lactococcus lactis
BGC0000867.1	0.17	Other	polyhydroxyalkanoic acids	Ectothiorhodospira shaposhnikovii
BGC0000866.1	0.17	Other	polyhydroxyalkanoate	Burkholderia sp. DSM 9242
BGC0001080.1	0.14	Other (Phenazine)	endophenazine A, endophenazine B	Streptomyces anulatus
BGC0001104.1	0.14	NRP, Polyketide	myxovirescin A1	Myxococcus xanthus DK 1622
BGC0001076.1	0.14	Other (Nucleoside)	liposidomycin B, liposidomycin A, liposidomycin C, liposidomycin Z, liposidomycin H, liposidomycin G, liposidomycin L, liposidomycin M, liposidomycin K, liposidomycin N	Streptomyces sp. SN-1061M
BGC0000530.1	0.14	RiPP	mutacin B-Ny266	Streptococcus mutans N66
BGC0000934.1	0.14	Other (Phenazine)	5-acetyl-5,10-dihydrophenazine-1-carboxylic acid, 5-(2-hydroxyacetyl)-5,10-dihydrophenazine-1-carboxylic acid, endophenazine A1, endophenazine F, endophenazine G	Kitasatospora sp. HKI 714
BGC0000872.1	0.14	Other	A-90289 A, A-90289 B	Streptomyces sp. SANK 60405

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000286.1	0.56	Polyketide	viguiepinol	Streptomyces sp. KO-3988
BGC0000764.1	0.51	Saccharide	exopolysaccharide	Lactococcus lactis
BGC0000867.1	0.49	Other	polyhydroxyalkanoic acids	Ectothiorhodospira shaposhnikovii
BGC0000866.1	0.48	Other	polyhydroxyalkanoate	Burkholderia sp. DSM 9242
BGC0001080.1	0.44	Other (Phenazine)	endophenazine A, endophenazine B	Streptomyces anulatus
BGC0001104.1	0.44	NRP, Polyketide	myxovirescin A1	Myxococcus xanthus DK 1622
BGC0001076.1	0.44	Other (Nucleoside)	liposidomycin B, liposidomycin A, liposidomycin C, liposidomycin Z, liposidomycin H, liposidomycin G, liposidomycin L, liposidomycin M, liposidomycin K, liposidomycin N	Streptomyces sp. SN-1061M
BGC0000530.1	0.43	RiPP	mutacin B-Ny266	Streptococcus mutans N66
BGC0000934.1	0.43	Other (Phenazine)	5-acetyl-5,10-dihydrophenazine-1-carboxylic acid, 5-(2-hydroxyacetyl)-5,10-dihydrophenazine-1-carboxylic acid, endophenazine A1, endophenazine F, endophenazine G	Kitasatospora sp. HKI 714
BGC0000872.1	0.43	Other	A-90289 A, A-90289 B	Streptomyces sp. SANK 60405

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NC_022369.1 - Region 4 - RaS-RiPP

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Location: 2,278,290 - 2,302,783 nt. (total: 24,494 nt) Show pHMM detection rules used

RaS-RiPP: (PF04055 and TIGR01716)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001209.1	0.23	RiPP	streptide	Streptococcus thermophilus LMD-9
BGC0001929.1	0.21	RiPP	WGK	Streptococcus ferus
BGC0000779.1	0.14	Saccharide	lipopolysaccharide	Aeromonas piscicola
BGC0000938.1	0.14	Other (Aminocoumarin)	fosfomycin	Streptomyces fradiae
BGC0000780.1	0.14	Saccharide	O&K-antigen	Vibrio parahaemolyticus
BGC0000906.1	0.13	Other	heme D1	Heliophilum fasciatum
BGC0000905.1	0.13	Other	heme D1	Heliobacillus mobilis
BGC0000343.1	0.07	NRP	enterobactin	Pseudomonas sp. J465
BGC0002016.1	0.07	Polyketide	lugdunomycin	Streptomyces sp. QL37
BGC0000197.1	0.07	Polyketide, Saccharide	aranciamycin	Streptomyces echinatus

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001209.1	0.56	RiPP	streptide	Streptococcus thermophilus LMD-9
BGC0001929.1	0.54	RiPP	WGK	Streptococcus ferus
BGC0000779.1	0.44	Saccharide	lipopolysaccharide	Aeromonas piscicola
BGC0000938.1	0.44	Other (Aminocoumarin)	fosfomycin	Streptomyces fradiae
BGC0000780.1	0.44	Saccharide	O&K-antigen	Vibrio parahaemolyticus
BGC0000906.1	0.41	Other	heme D1	Heliophilum fasciatum
BGC0000905.1	0.41	Other	heme D1	Heliobacillus mobilis
BGC0000343.1	0.29	NRP	enterobactin	Pseudomonas sp. J465
BGC0002016.1	0.28	Polyketide	lugdunomycin	Streptomyces sp. QL37
BGC0000197.1	0.27	Polyketide, Saccharide	aranciamycin	Streptomyces echinatus

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names