GCF_002278015.2_ASM227801v2_genomic - 5 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NZ_CP023011.2

Region	Type	From	To
Region 1	cyclic-lactone-autoinducer	303,953	316,632
Region 2	terpene	757,945	778,814
Region 3	lanthipeptide-class-ii	795,732	818,635
Region 4	cyclic-lactone-autoinducer	1,970,912	1,991,650
Region 5	T3PKS	2,454,477	2,495,628

NZ_CP023011.2 - Region 1 - cyclic-lactone-autoinducer

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Location: 303,953 - 316,632 nt. (total: 12,680 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001291.1	0.18	RiPP	enterocin NKR-5-3B	Enterococcus faecium
BGC0000494.1	0.16	RiPP	uberolysin	Streptococcus uberis
BGC0000540.1	0.09	RiPP	paenibacillin	Paenibacillus polymyxa OSY-DF
BGC0000624.1	0.08	RiPP	salivaricin CRL1328 α peptide, salivaricin CRL1328 β peptide	Lactobacillus salivarius

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001291.1	0.49	RiPP	enterocin NKR-5-3B	Enterococcus faecium
BGC0000494.1	0.46	RiPP	uberolysin	Streptococcus uberis
BGC0000540.1	0.34	RiPP	paenibacillin	Paenibacillus polymyxa OSY-DF
BGC0000624.1	0.32	RiPP	salivaricin CRL1328 α peptide, salivaricin CRL1328 β peptide	Lactobacillus salivarius

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

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Detailed TIGRFAM domain annotation

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NZ_CP023011.2 - Region 2 - terpene

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Location: 757,945 - 778,814 nt. (total: 20,870 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000647.1	0.33	Terpene	carotenoid	Rhodobacter sphaeroides
BGC0000758.1	0.27	Saccharide	capsular polysaccharide	Staphylococcus aureus
BGC0000648.1	0.19	Terpene	carotenoid	Myxococcus xanthus
BGC0000656.1	0.19	Terpene	zeaxanthin	Xanthobacter autotrophicus Py2
BGC0001579.1	0.17	RiPP	duramycin	Streptomyces cinnamoneus
BGC0000563.1	0.17	RiPP	venezuelin	Streptomyces venezuelae ATCC 10712
BGC0000616.1	0.17	RiPP	amylocyclicin	Bacillus velezensis FZB42
BGC0000554.1	0.16	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0000640.1	0.16	Terpene	carotenoid	Enterobacteriaceae bacterium DC404
BGC0000521.1	0.16	RiPP	lacticin 481	Lactococcus lactis subsp. lactis

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000647.1	0.66	Terpene	carotenoid	Rhodobacter sphaeroides
BGC0000758.1	0.61	Saccharide	capsular polysaccharide	Staphylococcus aureus
BGC0000648.1	0.51	Terpene	carotenoid	Myxococcus xanthus
BGC0000656.1	0.51	Terpene	zeaxanthin	Xanthobacter autotrophicus Py2
BGC0001579.1	0.49	RiPP	duramycin	Streptomyces cinnamoneus
BGC0000563.1	0.48	RiPP	venezuelin	Streptomyces venezuelae ATCC 10712
BGC0000616.1	0.48	RiPP	amylocyclicin	Bacillus velezensis FZB42
BGC0000554.1	0.47	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0000640.1	0.47	Terpene	carotenoid	Enterobacteriaceae bacterium DC404
BGC0000521.1	0.47	RiPP	lacticin 481	Lactococcus lactis subsp. lactis

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NZ_CP023011.2 - Region 3 - lanthipeptide-class-ii

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Location: 795,732 - 818,635 nt. (total: 22,904 nt) Show pHMM detection rules used

lanthipeptide-class-ii: cds(LANC_like and DUF4135)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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MIBiG comparison

KnownClusterBlast

Lanthipeptides

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001579.1	0.31	RiPP	duramycin	Streptomyces cinnamoneus
BGC0000525.1	0.25	RiPP	lichenicidin VK21 A1, lichenicidin VK21 A2	Bacillus licheniformis
BGC0000554.1	0.25	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0000500.1	0.23	RiPP	carnolysin A1, carnolysin A2	Carnobacterium maltaromaticum
BGC0000504.1	0.23	RiPP	cytolysin ClyLl, cytolysin ClyLs	Plasmid pAD1
BGC0000503.1	0.23	RiPP	cinnamycin	Streptomyces cinnamoneus
BGC0000551.1	0.20	RiPP	SapB	Streptomyces coelicolor A3(2)
BGC0000502.1	0.19	RiPP	cerecidin, cerecidin A1, cerecidin A2, cerecidin A3, cerecidin A4, cerecidin A5, cerecidin A6, cerecidin A7	Bacillus cereus
BGC0001407.1	0.18	RiPP	bicereucin	Bacillus cereus SJ1
BGC0001391.1	0.18	RiPP	thusin	Bacillus thuringiensis serovar rongseni

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001579.1	0.65	RiPP	duramycin	Streptomyces cinnamoneus
BGC0000525.1	0.59	RiPP	lichenicidin VK21 A1, lichenicidin VK21 A2	Bacillus licheniformis
BGC0000554.1	0.59	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0000500.1	0.56	RiPP	carnolysin A1, carnolysin A2	Carnobacterium maltaromaticum
BGC0000504.1	0.56	RiPP	cytolysin ClyLl, cytolysin ClyLs	Plasmid pAD1
BGC0000503.1	0.56	RiPP	cinnamycin	Streptomyces cinnamoneus
BGC0000551.1	0.52	RiPP	SapB	Streptomyces coelicolor A3(2)
BGC0000502.1	0.51	RiPP	cerecidin, cerecidin A1, cerecidin A2, cerecidin A3, cerecidin A4, cerecidin A5, cerecidin A6, cerecidin A7	Bacillus cereus
BGC0001407.1	0.50	RiPP	bicereucin	Bacillus cereus SJ1
BGC0001391.1	0.49	RiPP	thusin	Bacillus thuringiensis serovar rongseni

Similar known gene clusters

No matches found.

Lanthipeptide predictions

Lanthipeptide(s) for ctg1_706 - Putative Class II

ctg1_707 leader / core peptide: MAVGLLMKAGNVSEELAVLNNEHSLNASLDTICGT - MGDhaLGCGDhaFGCGDhaLDhaDhaCC

Legend:

Dha: Didehydroalanine
Dhb: Didehydrobutyrine

Detailed Pfam domain annotation

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Detailed TIGRFAM domain annotation

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Lanthipeptides

Core peptide predictions

ctg1_707 - Class II

Cleavage pHMM score: -5.10

RODEO score: 0

Monoisotopic mass: 1564.6 Da

Molecular weight: 1565.8 Da

Number of bridges: 4

Alternative weights: (assuming N unmodified Ser/Thr residues); 1583.8 Da N = 1

NZ_CP023011.2 - Region 4 - cyclic-lactone-autoinducer

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Location: 1,970,912 - 1,991,650 nt. (total: 20,739 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001361.1	0.20	Terpene	sodorifen	Serratia plymuthica 4Rx13
BGC0001120.1	0.19	NRP, Polyketide	burkholderic acid	Burkholderia thailandensis E264
BGC0001291.1	0.17	RiPP	enterocin NKR-5-3B	Enterococcus faecium
BGC0000883.1	0.15	Other	arginomycin	Streptomyces arginensis
BGC0001664.1	0.15	Terpene	merosterol	Scytonema sp. PCC 10023
BGC0001140.1	0.15	Terpene	platensimycin, platencin	Streptomyces platensis
BGC0000666.1	0.15	Terpene	xiamycin A	Streptomyces sp. SCSIO 02999
BGC0001156.1	0.15	Terpene	platencin	Streptomyces platensis
BGC0000665.1	0.15	Terpene, Alkaloid	xiamycin	Streptomyces sp. HKI0576
BGC0000765.1	0.15	Saccharide	exopolysaccharide	Lactobacillus johnsonii

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001361.1	0.52	Terpene	sodorifen	Serratia plymuthica 4Rx13
BGC0001120.1	0.51	NRP, Polyketide	burkholderic acid	Burkholderia thailandensis E264
BGC0001291.1	0.49	RiPP	enterocin NKR-5-3B	Enterococcus faecium
BGC0000883.1	0.46	Other	arginomycin	Streptomyces arginensis
BGC0001664.1	0.46	Terpene	merosterol	Scytonema sp. PCC 10023
BGC0001140.1	0.45	Terpene	platensimycin, platencin	Streptomyces platensis
BGC0000666.1	0.45	Terpene	xiamycin A	Streptomyces sp. SCSIO 02999
BGC0001156.1	0.45	Terpene	platencin	Streptomyces platensis
BGC0000665.1	0.45	Terpene, Alkaloid	xiamycin	Streptomyces sp. HKI0576
BGC0000765.1	0.44	Saccharide	exopolysaccharide	Lactobacillus johnsonii

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NZ_CP023011.2 - Region 5 - T3PKS

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Location: 2,454,477 - 2,495,628 nt. (total: 41,152 nt) Show pHMM detection rules used

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000286.1	0.23	Polyketide	viguiepinol	Streptomyces sp. KO-3988
BGC0000867.1	0.18	Other	polyhydroxyalkanoic acids	Ectothiorhodospira shaposhnikovii
BGC0000255.1	0.18	Polyketide	pederin	Uncultured bacterium
BGC0000866.1	0.17	Other	polyhydroxyalkanoate	Burkholderia sp. DSM 9242
BGC0001120.1	0.16	NRP, Polyketide	burkholderic acid	Burkholderia thailandensis E264
BGC0001571.1	0.15	Terpene	demethoxyviridin	Nodulisporium sp.
BGC0001080.1	0.14	Other (Phenazine)	endophenazine A, endophenazine B	Streptomyces anulatus
BGC0001104.1	0.11	NRP, Polyketide	myxovirescin A1	Myxococcus xanthus DK 1622
BGC0001472.1	0.11	RiPP	berninamycin A	Streptomyces bernensis
BGC0000934.1	0.11	Other (Phenazine)	5-acetyl-5,10-dihydrophenazine-1-carboxylic acid, 5-(2-hydroxyacetyl)-5,10-dihydrophenazine-1-carboxylic acid, endophenazine A1, endophenazine F, endophenazine G	Kitasatospora sp. HKI 714

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000286.1	0.56	Polyketide	viguiepinol	Streptomyces sp. KO-3988
BGC0000867.1	0.49	Other	polyhydroxyalkanoic acids	Ectothiorhodospira shaposhnikovii
BGC0000255.1	0.49	Polyketide	pederin	Uncultured bacterium
BGC0000866.1	0.49	Other	polyhydroxyalkanoate	Burkholderia sp. DSM 9242
BGC0001120.1	0.46	NRP, Polyketide	burkholderic acid	Burkholderia thailandensis E264
BGC0001571.1	0.45	Terpene	demethoxyviridin	Nodulisporium sp.
BGC0001080.1	0.44	Other (Phenazine)	endophenazine A, endophenazine B	Streptomyces anulatus
BGC0001104.1	0.38	NRP, Polyketide	myxovirescin A1	Myxococcus xanthus DK 1622
BGC0001472.1	0.38	RiPP	berninamycin A	Streptomyces bernensis
BGC0000934.1	0.37	Other (Phenazine)	5-acetyl-5,10-dihydrophenazine-1-carboxylic acid, 5-(2-hydroxyacetyl)-5,10-dihydrophenazine-1-carboxylic acid, endophenazine A1, endophenazine F, endophenazine G	Kitasatospora sp. HKI 714

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names