GCF_001657915.1_ASM165791v1_genomic - 4 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NZ_LXZX01000005 (original name was: NZ_LXZX01000005.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 5.1	RiPP-like	167,580	175,246
Region 5.2	lanthipeptide-class-iv	339,775	361,961
Region 5.3	RiPP-like	694,236	706,332
Region 5.4	T3PKS	1,302,155	1,343,330	fogacin A / fogacin B / fogacin C	Polyketide	5%

Region	Type	From	To	Most similar known cluster	Similarity
Region 5.1	RiPP-like	167,580	175,246
Region 5.2	lanthipeptide-class-iv	339,775	361,961
Region 5.3	RiPP-like	694,236	706,332
Region 5.4	T3PKS	1,302,155	1,343,330	fogacin A / fogacin B / fogacin C	Polyketide	5%

No secondary metabolite regions were found in these records:: NZ_LXZX01000001 (original name was: NZ_LXZX01000001.1); NZ_LXZX01000002 (original name was: NZ_LXZX01000002.1); NZ_LXZX01000003 (original name was: NZ_LXZX01000003.1); NZ_LXZX01000004 (original name was: NZ_LXZX01000004.1); NZ_LXZX01000006 (original name was: NZ_LXZX01000006.1); NZ_LXZX01000007 (original name was: NZ_LXZX01000007.1)

Compact view

c00005_NZ_LXZX.. - Region 1 - RiPP-like

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Location: 167,580 - 175,246 nt. (total: 7,667 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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MIBiG comparison

KnownClusterBlast

Pfam domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000563.1	0.15	RiPP	venezuelin	Streptomyces venezuelae ATCC 10712
BGC0000519.1	0.15	RiPP	labyrinthopeptin A2, labyrinthopeptin A1, labyrinthopeptin A3	Actinomadura namibiensis
BGC0000554.1	0.15	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0000513.1	0.15	RiPP	Ery-9, Ery-6, Ery-8, Ery-7, Ery-5, Ery-4, Ery-3	Saccharopolyspora erythraea NRRL 2338
BGC0000584.1	0.14	RiPP	colicin V	Escherichia coli
BGC0001928.1	0.14	Other	(2R,3S,4S)-5-fluoro-2,3,4-trihydroxypentanoic acid	Streptomyces sp. MA37
BGC0000294.1	0.14	NRP	acinetobactin	Acinetobacter baumannii
BGC0001484.1	0.13	Other	2'-chloropentostatin, 2'-amino-2'-deoxyadenosine	Actinomadura sp. ATCC 39365
BGC0000802.1	0.13	Saccharide	succinoglycan	Sinorhizobium meliloti
BGC0000703.1	0.13	Saccharide	kanamycin	Streptomyces kanamyceticus

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000563.1	0.46	RiPP	venezuelin	Streptomyces venezuelae ATCC 10712
BGC0000519.1	0.45	RiPP	labyrinthopeptin A2, labyrinthopeptin A1, labyrinthopeptin A3	Actinomadura namibiensis
BGC0000554.1	0.45	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0000513.1	0.45	RiPP	Ery-9, Ery-6, Ery-8, Ery-7, Ery-5, Ery-4, Ery-3	Saccharopolyspora erythraea NRRL 2338
BGC0000584.1	0.44	RiPP	colicin V	Escherichia coli
BGC0001928.1	0.44	Other	(2R,3S,4S)-5-fluoro-2,3,4-trihydroxypentanoic acid	Streptomyces sp. MA37
BGC0000294.1	0.44	NRP	acinetobactin	Acinetobacter baumannii
BGC0001484.1	0.42	Other	2'-chloropentostatin, 2'-amino-2'-deoxyadenosine	Actinomadura sp. ATCC 39365
BGC0000802.1	0.42	Saccharide	succinoglycan	Sinorhizobium meliloti
BGC0000703.1	0.42	Saccharide	kanamycin	Streptomyces kanamyceticus

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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c00005_NZ_LXZX.. - Region 2 - lanthipeptide-class-iv

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Location: 339,775 - 361,961 nt. (total: 22,187 nt) Show pHMM detection rules used

lanthipeptide-class-iv: (cds(LANC_like and Pkinase) and not micKC)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Lanthipeptides

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000551.1	0.21	RiPP	SapB	Streptomyces coelicolor A3(2)
BGC0000519.1	0.21	RiPP	labyrinthopeptin A2, labyrinthopeptin A1, labyrinthopeptin A3	Actinomadura namibiensis
BGC0000494.1	0.17	RiPP	uberolysin	Streptococcus uberis
BGC0001639.1	0.16	RiPP	klebsidin	Klebsiella pneumoniae
BGC0000539.1	0.16	RiPP	nukacin ISK-1	Staphylococcus warneri
BGC0000486.1	0.16	RiPP	butyrivibriocin AR10	Butyrivibrio fibrisolvens
BGC0000553.1	0.15	RiPP	SRO15-2212	Streptomyces filamentosus NRRL 15998
BGC0000521.1	0.15	RiPP	lacticin 481	Lactococcus lactis subsp. lactis
BGC0000513.1	0.15	RiPP	Ery-9, Ery-6, Ery-8, Ery-7, Ery-5, Ery-4, Ery-3	Saccharopolyspora erythraea NRRL 2338
BGC0000626.1	0.15	RiPP	thuricin	Bacillus thuringiensis

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000551.1	0.53	RiPP	SapB	Streptomyces coelicolor A3(2)
BGC0000519.1	0.53	RiPP	labyrinthopeptin A2, labyrinthopeptin A1, labyrinthopeptin A3	Actinomadura namibiensis
BGC0000494.1	0.49	RiPP	uberolysin	Streptococcus uberis
BGC0001639.1	0.47	RiPP	klebsidin	Klebsiella pneumoniae
BGC0000539.1	0.46	RiPP	nukacin ISK-1	Staphylococcus warneri
BGC0000486.1	0.46	RiPP	butyrivibriocin AR10	Butyrivibrio fibrisolvens
BGC0000553.1	0.46	RiPP	SRO15-2212	Streptomyces filamentosus NRRL 15998
BGC0000521.1	0.46	RiPP	lacticin 481	Lactococcus lactis subsp. lactis
BGC0000513.1	0.46	RiPP	Ery-9, Ery-6, Ery-8, Ery-7, Ery-5, Ery-4, Ery-3	Saccharopolyspora erythraea NRRL 2338
BGC0000626.1	0.45	RiPP	thuricin	Bacillus thuringiensis

Similar known gene clusters

No matches found.

Lanthipeptide predictions

Lanthipeptides - No core peptides found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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Lanthipeptides

Core peptide predictions

No core peptides found.

c00005_NZ_LXZX.. - Region 3 - RiPP-like

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Location: 694,236 - 706,332 nt. (total: 12,097 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000617.1	0.20	RiPP	coagulin	Bacillus coagulans
BGC0000558.1	0.16	RiPP	sublancin 168	Bacillus subtilis subsp. subtilis str. 168
BGC0000619.1	0.15	RiPP	gassericin T	Lactobacillus gasseri
BGC0001602.1	0.15	RiPP	gassericin-T	Lactobacillus gasseri
BGC0001388.1	0.15	RiPP	gassericin E	Lactobacillus gasseri
BGC0000294.1	0.15	NRP	acinetobactin	Acinetobacter baumannii
BGC0000584.1	0.14	RiPP	colicin V	Escherichia coli
BGC0000624.1	0.14	RiPP	salivaricin CRL1328 α peptide, salivaricin CRL1328 β peptide	Lactobacillus salivarius
BGC0000586.1	0.14	RiPP	microcin E492	Klebsiella pneumoniae RYC492
BGC0000587.1	0.14	RiPP	microcin H47	Escherichia coli

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000617.1	0.53	RiPP	coagulin	Bacillus coagulans
BGC0000558.1	0.46	RiPP	sublancin 168	Bacillus subtilis subsp. subtilis str. 168
BGC0000619.1	0.45	RiPP	gassericin T	Lactobacillus gasseri
BGC0001602.1	0.45	RiPP	gassericin-T	Lactobacillus gasseri
BGC0001388.1	0.45	RiPP	gassericin E	Lactobacillus gasseri
BGC0000294.1	0.45	NRP	acinetobactin	Acinetobacter baumannii
BGC0000584.1	0.44	RiPP	colicin V	Escherichia coli
BGC0000624.1	0.43	RiPP	salivaricin CRL1328 α peptide, salivaricin CRL1328 β peptide	Lactobacillus salivarius
BGC0000586.1	0.43	RiPP	microcin E492	Klebsiella pneumoniae RYC492
BGC0000587.1	0.43	RiPP	microcin H47	Escherichia coli

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

c00005_NZ_LXZX.. - Region 4 - T3PKS

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Location: 1,302,155 - 1,343,330 nt. (total: 41,176 nt) Show pHMM detection rules used

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000803.1	0.26	Saccharide	GG exopolysaccharide	Lactobacillus rhamnosus GG
BGC0000286.1	0.23	Polyketide	viguiepinol	Streptomyces sp. KO-3988
BGC0001412.1	0.23	Saccharide	polysaccharide C	Bacteroides fragilis
BGC0000214.1	0.19	Polyketide	cosmomycin B	Streptomyces olindensis
BGC0000781.1	0.17	Saccharide	O-antigen	Pseudomonas aeruginosa
BGC0000813.1	0.16	Alkaloid	K-252a	Nonomuraea longicatena
BGC0000827.1	0.16	Alkaloid	staurosporine	Salinispora arenicola CNS-205
BGC0001387.1	0.16	Other	nucleocidin	Streptomyces calvus
BGC0000792.1	0.16	Saccharide	polysaccharide	Enterococcus faecalis OG1RF
BGC0000825.1	0.16	Alkaloid	staurosporine	Streptomyces sp. TP-A0274

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000803.1	0.60	Saccharide	GG exopolysaccharide	Lactobacillus rhamnosus GG
BGC0000286.1	0.56	Polyketide	viguiepinol	Streptomyces sp. KO-3988
BGC0001412.1	0.56	Saccharide	polysaccharide C	Bacteroides fragilis
BGC0000214.1	0.51	Polyketide	cosmomycin B	Streptomyces olindensis
BGC0000781.1	0.48	Saccharide	O-antigen	Pseudomonas aeruginosa
BGC0000813.1	0.47	Alkaloid	K-252a	Nonomuraea longicatena
BGC0000827.1	0.47	Alkaloid	staurosporine	Salinispora arenicola CNS-205
BGC0001387.1	0.47	Other	nucleocidin	Streptomyces calvus
BGC0000792.1	0.47	Saccharide	polysaccharide	Enterococcus faecalis OG1RF
BGC0000825.1	0.47	Alkaloid	staurosporine	Streptomyces sp. TP-A0274

Similar known gene clusters

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names