GCF_002209165.2_ASM220916v2_genomic - 4 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NZ_CP022046.2

Region	Type	From	To
Region 1.1	cyclic-lactone-autoinducer	655,974	676,686
Region 1.2	RiPP-like	1,829,799	1,840,092
Region 1.3	terpene	2,631,745	2,652,620
Region 1.4	siderophore,T3PKS	2,722,673	2,764,040

Region	Type	From	To	Similarity
Region 1.1	cyclic-lactone-autoinducer	655,974	676,686
Region 1.2	RiPP-like	1,829,799	1,840,092
Region 1.3	terpene	2,631,745	2,652,620
Region 1.4	siderophore,T3PKS	2,722,673	2,764,040

No secondary metabolite regions were found in these records:: NZ_CP022047.2

Compact view

NZ_CP022046.2 - Region 1 - cyclic-lactone-autoinducer

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Location: 655,974 - 676,686 nt. (total: 20,713 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000488.1	0.18	RiPP	circularin A	Clostridium beijerinckii
BGC0000554.1	0.16	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0000500.1	0.16	RiPP	carnolysin A1, carnolysin A2	Carnobacterium maltaromaticum
BGC0001862.1	0.16	RiPP	geocillicin	Aeribacillus pallidus
BGC0001930.1	0.16	RiPP	pallidocin	Aeribacillus pallidus
BGC0000504.1	0.16	RiPP	cytolysin ClyLl, cytolysin ClyLs	Plasmid pAD1
BGC0000560.1	0.16	RiPP	subtilomycin	Bacillus subtilis
BGC0000543.1	0.16	RiPP	pep5	Staphylococcus epidermidis
BGC0000522.1	0.16	RiPP	lacticin Z	Lactococcus lactis
BGC0000509.1	0.16	RiPP	epilancin 15x	Staphylococcus epidermidis

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000488.1	0.50	RiPP	circularin A	Clostridium beijerinckii
BGC0000554.1	0.47	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0000500.1	0.47	RiPP	carnolysin A1, carnolysin A2	Carnobacterium maltaromaticum
BGC0001862.1	0.47	RiPP	geocillicin	Aeribacillus pallidus
BGC0001930.1	0.47	RiPP	pallidocin	Aeribacillus pallidus
BGC0000504.1	0.47	RiPP	cytolysin ClyLl, cytolysin ClyLs	Plasmid pAD1
BGC0000560.1	0.47	RiPP	subtilomycin	Bacillus subtilis
BGC0000543.1	0.47	RiPP	pep5	Staphylococcus epidermidis
BGC0000522.1	0.47	RiPP	lacticin Z	Lactococcus lactis
BGC0000509.1	0.47	RiPP	epilancin 15x	Staphylococcus epidermidis

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NZ_CP022046.2 - Region 2 - RiPP-like

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Location: 1,829,799 - 1,840,092 nt. (total: 10,294 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000504.1	0.16	RiPP	cytolysin ClyLl, cytolysin ClyLs	Plasmid pAD1
BGC0000548.1	0.16	RiPP	salivaricin A	Streptococcus salivarius
BGC0000500.1	0.16	RiPP	carnolysin A1, carnolysin A2	Carnobacterium maltaromaticum
BGC0000554.1	0.16	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0001639.1	0.15	RiPP	klebsidin	Klebsiella pneumoniae
BGC0001120.1	0.15	NRP, Polyketide	burkholderic acid	Burkholderia thailandensis E264
BGC0000590.1	0.15	RiPP	microcin N	Escherichia coli
BGC0000294.1	0.14	NRP	acinetobactin	Acinetobacter baumannii
BGC0000623.1	0.14	RiPP	plantaricin W α, plantaricin W β	Lactobacillus plantarum
BGC0000588.1	0.14	RiPP	microcin L	Escherichia coli

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000504.1	0.47	RiPP	cytolysin ClyLl, cytolysin ClyLs	Plasmid pAD1
BGC0000548.1	0.47	RiPP	salivaricin A	Streptococcus salivarius
BGC0000500.1	0.47	RiPP	carnolysin A1, carnolysin A2	Carnobacterium maltaromaticum
BGC0000554.1	0.46	RiPP	SRO15-3108	Streptomyces filamentosus NRRL 15998
BGC0001639.1	0.45	RiPP	klebsidin	Klebsiella pneumoniae
BGC0001120.1	0.45	NRP, Polyketide	burkholderic acid	Burkholderia thailandensis E264
BGC0000590.1	0.44	RiPP	microcin N	Escherichia coli
BGC0000294.1	0.44	NRP	acinetobactin	Acinetobacter baumannii
BGC0000623.1	0.44	RiPP	plantaricin W α, plantaricin W β	Lactobacillus plantarum
BGC0000588.1	0.44	RiPP	microcin L	Escherichia coli

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NZ_CP022046.2 - Region 3 - terpene

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Location: 2,631,745 - 2,652,620 nt. (total: 20,876 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000647.1	0.32	Terpene	carotenoid	Rhodobacter sphaeroides
BGC0000648.1	0.23	Terpene	carotenoid	Myxococcus xanthus
BGC0000646.1	0.21	Terpene	β-carotein	uncultured bacterium
BGC0000645.1	0.21	Terpene	carotenoid	Halobacillus halophilus DSM 2266
BGC0001227.1	0.20	Terpene	isorenieratene	Streptomyces collinus Tu 365
BGC0000664.1	0.20	Terpene	isorenieratene	Streptomyces griseus subsp. griseus NBRC 13350
BGC0000633.1	0.20	Terpene	carotenoid	Streptomyces avermitilis
BGC0001456.1	0.19	Terpene	isorenieratene	Streptomyces argillaceus
BGC0000656.1	0.18	Terpene	zeaxanthin	Xanthobacter autotrophicus Py2
BGC0000663.1	0.13	Terpene	hopene	Streptomyces coelicolor A3(2)

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000647.1	0.66	Terpene	carotenoid	Rhodobacter sphaeroides
BGC0000648.1	0.56	Terpene	carotenoid	Myxococcus xanthus
BGC0000646.1	0.54	Terpene	β-carotein	uncultured bacterium
BGC0000645.1	0.54	Terpene	carotenoid	Halobacillus halophilus DSM 2266
BGC0001227.1	0.53	Terpene	isorenieratene	Streptomyces collinus Tu 365
BGC0000664.1	0.52	Terpene	isorenieratene	Streptomyces griseus subsp. griseus NBRC 13350
BGC0000633.1	0.52	Terpene	carotenoid	Streptomyces avermitilis
BGC0001456.1	0.51	Terpene	isorenieratene	Streptomyces argillaceus
BGC0000656.1	0.50	Terpene	zeaxanthin	Xanthobacter autotrophicus Py2
BGC0000663.1	0.41	Terpene	hopene	Streptomyces coelicolor A3(2)

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NZ_CP022046.2 - Region 4 - T3PKS,siderophore

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Location: 2,722,673 - 2,764,040 nt. (total: 41,368 nt) Show pHMM detection rules used

Region on contig edge.

siderophore: IucA_IucC
T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000944.1	0.43	Other (Non-NRP siderophore)	staphyloferrin A	Staphylococcus aureus subsp. aureus NCTC 8325
BGC0000946.1	0.35	Other	vibrioferrin	Vibrio parahaemolyticus
BGC0000947.1	0.30	Other	vibrioferrin	Vibrio alginolyticus
BGC0001870.1	0.29	Other	putrebactin, avaroferrin	Xenorhabdus budapestensis
BGC0000286.1	0.22	Polyketide	viguiepinol	Streptomyces sp. KO-3988
BGC0000205.1	0.21	Polyketide	bryostatin	Candidatus Endobugula sertula
BGC0000219.1	0.20	Polyketide, Saccharide	elloramycin	Streptomyces olivaceus
BGC0000255.1	0.19	Polyketide	pederin	Uncultured bacterium
BGC0000934.1	0.19	Other (Phenazine)	5-acetyl-5,10-dihydrophenazine-1-carboxylic acid, 5-(2-hydroxyacetyl)-5,10-dihydrophenazine-1-carboxylic acid, endophenazine A1, endophenazine F, endophenazine G	Kitasatospora sp. HKI 714
BGC0001197.1	0.19	Polyketide	frankiamicin	Frankia sp. EAN1pec

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000946.1	0.68	Other	vibrioferrin	Vibrio parahaemolyticus
BGC0000947.1	0.67	Other	vibrioferrin	Vibrio alginolyticus
BGC0001870.1	0.66	Other	putrebactin, avaroferrin	Xenorhabdus budapestensis
BGC0000286.1	0.55	Polyketide	viguiepinol	Streptomyces sp. KO-3988
BGC0000944.1	0.54	Other (Non-NRP siderophore)	staphyloferrin A	Staphylococcus aureus subsp. aureus NCTC 8325
BGC0000205.1	0.54	Polyketide	bryostatin	Candidatus Endobugula sertula
BGC0000255.1	0.52	Polyketide	pederin	Uncultured bacterium
BGC0000934.1	0.51	Other (Phenazine)	5-acetyl-5,10-dihydrophenazine-1-carboxylic acid, 5-(2-hydroxyacetyl)-5,10-dihydrophenazine-1-carboxylic acid, endophenazine A1, endophenazine F, endophenazine G	Kitasatospora sp. HKI 714
BGC0001197.1	0.51	Polyketide	frankiamicin	Frankia sp. EAN1pec
BGC0000836.1	0.50	Other	APE Ec	Escherichia coli CFT073

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names