GCF_000185505.1_ASM18550v1_genomic - 5 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

NZ_GL622359.1

Region	Type	From	To
Region 1.1	NRPS	15,705	59,316
Region 1.2	ranthipeptide	204,555	225,949
Region 1.3	NRPS	850,484	894,771
Region 1.4	NRPS	1,160,840	1,209,358
Region 1.5	NRPS,NRPS-like	1,323,103	1,378,400

Region	Type	From	To	Similarity
Region 1.1	NRPS	15,705	59,316
Region 1.2	ranthipeptide	204,555	225,949
Region 1.3	NRPS	850,484	894,771
Region 1.4	NRPS	1,160,840	1,209,358
Region 1.5	NRPS,NRPS-like	1,323,103	1,378,400

No secondary metabolite regions were found in these records:: NZ_GL622360.1; NZ_GL622361.1; NZ_GL622362.1; NZ_GL622363.1; NZ_GL622364.1; NZ_GL622365.1

Compact view

NZ_GL622359.1 - Region 1 - NRPS

Download region GenBank file

Download region SVG

Location: 15,705 - 59,316 nt. (total: 43,612 nt) Show pHMM detection rules used

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

NRPS/PKS modules

Pfam domains

TIGRFAM domains

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001891.1	0.23	Other	closthioamide	Ruminiclostridium cellulolyticum H10
BGC0000427.1	0.21	NRP	shinorine, 4-deoxygadusol, mycosporine glycine	Trichormus variabilis ATCC 29413
BGC0001479.1	0.21	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102
BGC0000410.1	0.21	NRP	pseudomonine	Pseudomonas fluorescens
BGC0001135.1	0.21	NRP	bicornutin A1, bicornutin A2	Xenorhabdus budapestensis
BGC0000343.1	0.21	NRP	enterobactin	Pseudomonas sp. J465
BGC0001166.1	0.21	NRP	HC-toxin	Alternaria jesenskae
BGC0001220.1	0.20	NRP	aculeacin A	Aspergillus japonicus
BGC0001132.1	0.20	NRP	xenotetrapeptide	Xenorhabdus nematophila ATCC 19061
BGC0001261.1	0.20	NRP	AM-toxin	Alternaria alternata

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001891.1	0.56	Other	closthioamide	Ruminiclostridium cellulolyticum H10
BGC0000427.1	0.54	NRP	shinorine, 4-deoxygadusol, mycosporine glycine	Trichormus variabilis ATCC 29413
BGC0001479.1	0.54	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102
BGC0000410.1	0.54	NRP	pseudomonine	Pseudomonas fluorescens
BGC0001135.1	0.54	NRP	bicornutin A1, bicornutin A2	Xenorhabdus budapestensis
BGC0000343.1	0.53	NRP	enterobactin	Pseudomonas sp. J465
BGC0001166.1	0.53	NRP	HC-toxin	Alternaria jesenskae
BGC0001220.1	0.53	NRP	aculeacin A	Aspergillus japonicus
BGC0001132.1	0.53	NRP	xenotetrapeptide	Xenorhabdus nematophila ATCC 19061
BGC0001261.1	0.53	NRP	AM-toxin	Alternaria alternata

Similar known gene clusters

No matches found.

Module view

Legend

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 15704 - 59316:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (Me-cys)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg1_26

Search NORINE for peptide: strict or relaxed

AMP-binding (466..827): cys

NRPSPredictor2: cys

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: cys
Small clusters prediction:: cys
Single AA prediction:: cys

Stachelhaus prediction details:

Stachelhaus sequence:: DLYNLSLIWK
Nearest Stachelhaus code:: cys
Stachelhaus code match:: 100% (strong)

NZ_GL622359.1 - Region 2 - ranthipeptide

Download region GenBank file

Download region SVG

Location: 204,555 - 225,949 nt. (total: 21,395 nt) Show pHMM detection rules used

ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or YcaO or TIGR03882)))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000764.1	0.14	Saccharide	exopolysaccharide	Lactococcus lactis
BGC0000019.1	0.13	Polyketide	angolamycin	Streptomyces eurythermus
BGC0000803.1	0.13	Saccharide	GG exopolysaccharide	Lactobacillus rhamnosus GG
BGC0000820.1	0.13	Alkaloid	physostigmine	Streptomyces griseofuscus
BGC0001677.1	0.11	Polyketide	mycophenolic acid	Penicillium roqueforti
BGC0001360.1	0.09	Polyketide	mycophenolic acid	Penicillium roqueforti FM164
BGC0000104.1	0.07	Polyketide, Terpene	mycophenolic acid	Penicillium brevicompactum
BGC0000148.1	0.03	Polyketide	A83543A	Saccharopolyspora spinosa
BGC0000055.1	0.03	Polyketide, Saccharide	erythromycin A, erythromycin B, erythromycin C, erythromycin D	Saccharopolyspora erythraea NRRL 2338

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000764.1	0.43	Saccharide	exopolysaccharide	Lactococcus lactis
BGC0000019.1	0.42	Polyketide	angolamycin	Streptomyces eurythermus
BGC0000803.1	0.41	Saccharide	GG exopolysaccharide	Lactobacillus rhamnosus GG
BGC0000820.1	0.41	Alkaloid	physostigmine	Streptomyces griseofuscus
BGC0001677.1	0.38	Polyketide	mycophenolic acid	Penicillium roqueforti
BGC0001360.1	0.33	Polyketide	mycophenolic acid	Penicillium roqueforti FM164
BGC0000104.1	0.29	Polyketide, Terpene	mycophenolic acid	Penicillium brevicompactum
BGC0000148.1	0.17	Polyketide	A83543A	Saccharopolyspora spinosa
BGC0000055.1	0.16	Polyketide, Saccharide	erythromycin A, erythromycin B, erythromycin C, erythromycin D	Saccharopolyspora erythraea NRRL 2338

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

NZ_GL622359.1 - Region 3 - NRPS

Download region GenBank file

Download region SVG

Location: 850,484 - 894,771 nt. (total: 44,288 nt) Show pHMM detection rules used

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

NRPS/PKS modules

Pfam domains

TIGRFAM domains

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000427.1	0.32	NRP	shinorine, 4-deoxygadusol, mycosporine glycine	Trichormus variabilis ATCC 29413
BGC0000375.1	0.32	NRP	indigoidine	Streptomyces chromofuscus
BGC0000900.1	0.32	Other	ferrichrome	Aspergillus oryzae
BGC0001249.1	0.31	NRP	dimethylcoprogen	Alternaria alternata
BGC0000348.1	0.31	NRP	ergovaline	Epichloe festucae var. lolii
BGC0000876.1	0.29	Other	neopolyoxin C	Streptomyces tendae
BGC0000921.1	0.27	Other (Shikimate-derived), Polyketide, NRP	promysalin	Pseudomonas putida
BGC0001479.1	0.26	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102
BGC0001399.1	0.25	NRP	fellutamide B	Aspergillus nidulans FGSC A4
BGC0001261.1	0.24	NRP	AM-toxin	Alternaria alternata

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000427.1	0.66	NRP	shinorine, 4-deoxygadusol, mycosporine glycine	Trichormus variabilis ATCC 29413
BGC0000375.1	0.65	NRP	indigoidine	Streptomyces chromofuscus
BGC0000900.1	0.65	Other	ferrichrome	Aspergillus oryzae
BGC0001249.1	0.65	NRP	dimethylcoprogen	Alternaria alternata
BGC0000348.1	0.64	NRP	ergovaline	Epichloe festucae var. lolii
BGC0000876.1	0.63	Other	neopolyoxin C	Streptomyces tendae
BGC0000921.1	0.61	Other (Shikimate-derived), Polyketide, NRP	promysalin	Pseudomonas putida
BGC0001479.1	0.59	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102
BGC0001399.1	0.59	NRP	fellutamide B	Aspergillus nidulans FGSC A4
BGC0001261.1	0.58	NRP	AM-toxin	Alternaria alternata

Similar known gene clusters

No matches found.

Module view

Legend

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 3, location 850483 - 894771:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X - cys)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg1_802

Search NORINE for peptide: strict or relaxed

AMP-binding (13..458): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: GfFgfgAfAK
Nearest Stachelhaus code:: 2-oxo-isovaleric-acid
Stachelhaus code match:: 50% (weak)

AMP-binding (1133..1525): cys

NRPSPredictor2: cys

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: cys
Small clusters prediction:: cys
Single AA prediction:: cys

Stachelhaus prediction details:

Stachelhaus sequence:: DLYNiSMIWK
Nearest Stachelhaus code:: cys
Stachelhaus code match:: 90% (moderate)

ctg1_811

Search NORINE for peptide: strict or relaxed

AMP-binding (8..410): ala

NRPSPredictor2: ala

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: N/A
Single AA prediction:: ala

Stachelhaus prediction details:

Stachelhaus sequence:: DLMVLCTVcK
Nearest Stachelhaus code:: ala
Stachelhaus code match:: 90% (moderate)

NZ_GL622359.1 - Region 4 - NRPS

Download region GenBank file

Download region SVG

Location: 1,160,840 - 1,209,358 nt. (total: 48,519 nt) Show pHMM detection rules used

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

NRPS/PKS modules

Pfam domains

TIGRFAM domains

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000343.1	0.23	NRP	enterobactin	Pseudomonas sp. J465
BGC0001343.1	0.23	Polyketide	aurachin A, aurachin D	Stigmatella aurantiaca Sg a15
BGC0000375.1	0.23	NRP	indigoidine	Streptomyces chromofuscus
BGC0001168.1	0.22	NRP	livipeptin	Streptomyces lividans 1326
BGC0000632.1	0.22	Terpene, Saccharide	brasilicardin A	Nocardia terpenica
BGC0001615.1	0.22	NRP	hexose-palythine-serine, hexose-shinorine	Heteroscytonema crispum UCFS10
BGC0001591.1	0.21	Other	fatty acid enol ester	uncultured bacterium CSLC2
BGC0001688.1	0.21	Other	N-tetradecanoyl tyrosine	uncultured bacterium CSLC2
BGC0000653.1	0.21	Terpene	pentalenolactone	Streptomyces arenae
BGC0001135.1	0.20	NRP	bicornutin A1, bicornutin A2	Xenorhabdus budapestensis

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000343.1	0.57	NRP	enterobactin	Pseudomonas sp. J465
BGC0001343.1	0.56	Polyketide	aurachin A, aurachin D	Stigmatella aurantiaca Sg a15
BGC0000375.1	0.56	NRP	indigoidine	Streptomyces chromofuscus
BGC0001168.1	0.55	NRP	livipeptin	Streptomyces lividans 1326
BGC0000632.1	0.55	Terpene, Saccharide	brasilicardin A	Nocardia terpenica
BGC0001615.1	0.55	NRP	hexose-palythine-serine, hexose-shinorine	Heteroscytonema crispum UCFS10
BGC0001591.1	0.54	Other	fatty acid enol ester	uncultured bacterium CSLC2
BGC0001688.1	0.54	Other	N-tetradecanoyl tyrosine	uncultured bacterium CSLC2
BGC0000653.1	0.53	Terpene	pentalenolactone	Streptomyces arenae
BGC0001135.1	0.53	NRP	bicornutin A1, bicornutin A2	Xenorhabdus budapestensis

Similar known gene clusters

No matches found.

Module view

Legend

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 4, location 1160839 - 1209358:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (Me-cys - Me-cys)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg1_1086

Search NORINE for peptide: strict or relaxed

AMP-binding (54..270): X

NRPSPredictor2: (unknown)

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: --WAIgv--K
Nearest Stachelhaus code:: phe
Stachelhaus code match:: 40% (weak)

ctg1_1087

Search NORINE for peptide: strict or relaxed

AMP-binding (36..412): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: ayvpIGGpqK
Nearest Stachelhaus code:: val
Stachelhaus code match:: 40% (weak)

ctg1_1090

Search NORINE for peptide: strict or relaxed

AMP-binding (465..842): cys

NRPSPredictor2: cys

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: cys
Small clusters prediction:: cys
Single AA prediction:: cys

Stachelhaus prediction details:

Stachelhaus sequence:: DLFNLSLIWK
Nearest Stachelhaus code:: cys
Stachelhaus code match:: 100% (strong)

AMP-binding (1879..2249): cys

NRPSPredictor2: cys

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: cys
Small clusters prediction:: cys
Single AA prediction:: cys

Stachelhaus prediction details:

Stachelhaus sequence:: DLFNlSLVWK
Nearest Stachelhaus code:: cys
Stachelhaus code match:: 90% (moderate)

ctg1_1092

Search NORINE for peptide: strict or relaxed

AMP-binding (19..350): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: sFcyVsqslK
Nearest Stachelhaus code:: thr
Stachelhaus code match:: 30% (weak)

NZ_GL622359.1 - Region 5 - NRPS,NRPS-like

Download region GenBank file

Download region SVG

Location: 1,323,103 - 1,378,400 nt. (total: 55,298 nt) Show pHMM detection rules used

NRPS: cds(Condensation and (AMP-binding or A-OX))
NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

NRPS/PKS modules

Pfam domains

TIGRFAM domains

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000427.1	0.99	NRP	shinorine, 4-deoxygadusol, mycosporine glycine	Trichormus variabilis ATCC 29413
BGC0000375.1	0.97	NRP	indigoidine	Streptomyces chromofuscus
BGC0000900.1	0.95	Other	ferrichrome	Aspergillus oryzae
BGC0001527.1	0.94	Other	basidioferrin	Gelatoporia subvermispora
BGC0000348.1	0.93	NRP	ergovaline	Epichloe festucae var. lolii
BGC0001249.1	0.92	NRP	dimethylcoprogen	Alternaria alternata
BGC0000460.1	0.90	NRP	vulnibactin	Vibrio vulnificus CMCP6
BGC0002002.1	0.90	NRP	1,6-phenazinedimethanol, fontizine A	Serratia fonticola
BGC0000352.1	0.84	NRP	fimsbactin A	Acinetobacter sp. ADP1
BGC0000921.1	0.83	Other (Shikimate-derived), Polyketide, NRP	promysalin	Pseudomonas putida

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000427.1	0.66	NRP	shinorine, 4-deoxygadusol, mycosporine glycine	Trichormus variabilis ATCC 29413
BGC0000375.1	0.66	NRP	indigoidine	Streptomyces chromofuscus
BGC0000900.1	0.65	Other	ferrichrome	Aspergillus oryzae
BGC0001527.1	0.65	Other	basidioferrin	Gelatoporia subvermispora
BGC0000348.1	0.64	NRP	ergovaline	Epichloe festucae var. lolii
BGC0001249.1	0.64	NRP	dimethylcoprogen	Alternaria alternata
BGC0000460.1	0.64	NRP	vulnibactin	Vibrio vulnificus CMCP6
BGC0002002.1	0.63	NRP	1,6-phenazinedimethanol, fontizine A	Serratia fonticola
BGC0000352.1	0.62	NRP	fimsbactin A	Acinetobacter sp. ADP1
BGC0000921.1	0.61	Other (Shikimate-derived), Polyketide, NRP	promysalin	Pseudomonas putida

Similar known gene clusters

No matches found.

Module view

Legend

Detailed Pfam domain annotation

Selected features only

Expand to show all names

Detailed TIGRFAM domain annotation

Selected features only

Expand to show all names

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 5, location 1323102 - 1378400:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (cys) + (cys) + (cys)

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 6, location 1323102 - 1368625:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (cys) + (cys) + (cys)

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 7, location 1329839 - 1371797:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (cys) + (cys) + (cys)

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 8, location 1335748 - 1378400:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (cys) + (cys) + (cys)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg1_1272

Search NORINE for peptide: strict or relaxed

AMP-binding (703..1086): cys

NRPSPredictor2: cys

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: cys
Small clusters prediction:: cys
Single AA prediction:: cys

Stachelhaus prediction details:

Stachelhaus sequence:: DLYNiSMIWK
Nearest Stachelhaus code:: cys
Stachelhaus code match:: 90% (moderate)

ctg1_1274

Search NORINE for peptide: strict or relaxed

AMP-binding (18..221): X

NRPSPredictor2: hydrophobic-aliphatic

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: ----IAA--K
Nearest Stachelhaus code:: phe
Stachelhaus code match:: 40% (weak)

ctg1_1275

Search NORINE for peptide: strict or relaxed

AMP-binding (0..348): cys

NRPSPredictor2: cys

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: cys
Small clusters prediction:: cys
Single AA prediction:: cys

Stachelhaus prediction details:

Stachelhaus sequence:: DLYNMSLiWK
Nearest Stachelhaus code:: cys
Stachelhaus code match:: 90% (moderate)

ctg1_1281

Search NORINE for peptide: strict or relaxed

AMP-binding (1..388): cys

NRPSPredictor2: cys

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: cys
Small clusters prediction:: cys
Single AA prediction:: cys

Stachelhaus prediction details:

Stachelhaus sequence:: DLFNLSLIWK
Nearest Stachelhaus code:: cys
Stachelhaus code match:: 100% (strong)