GCF_029167075.1_ASM2916707v1_genomic - 13 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

c00003_NZ_JARF.. (original name was: NZ_JARFMK010000012.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 3.1	hserlactone	209,858	230,529

c00004_NZ_JARF.. (original name was: NZ_JARFMK010000013.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 4.1	ectoine	1	10,287	rhizomide A / rhizomide B / rhizomide C	NRP	100%
Region 4.2	RiPP-like	108,499	119,419

c00011_NZ_JARF.. (original name was: NZ_JARFMK010000001.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 11.1	terpene	142,521	167,507	malleobactin A / malleobactin B / malleobactin C / malleobactin D	NRP:NRP siderophore	7%
Region 11.2	redox-cofactor	903,461	925,742
Region 11.3	RiPP-like,NRPS	1,224,258	1,273,748

c00012_NZ_JARF.. (original name was: NZ_JARFMK010000020.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 12.1	phosphonate	1	30,965

c00015_NZ_JARF.. (original name was: NZ_JARFMK010000023.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 15.1	hserlactone	63,026	78,654

c00031_NZ_JARF.. (original name was: NZ_JARFMK010000038.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 31.1	NRPS-like	1	15,246	luminmide	NRP	100%

c00040_NZ_JARF.. (original name was: NZ_JARFMK010000046.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 40.1	NRPS	1	4,208	rhizomide A / rhizomide B / rhizomide C	NRP	100%

c00046_NZ_JARF.. (original name was: NZ_JARFMK010000051.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 46.1	NRPS	1	2,354	luminmide	NRP	100%

c00059_NZ_JARF.. (original name was: NZ_JARFMK010000007.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 59.1	terpene	91,975	112,838

c00060_NZ_JARF.. (original name was: NZ_JARFMK010000008.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 60.1	NRPS	252,570	325,269	crochelin A	NRP + Polyketide	23%

Region	Type	From	To	Most similar known cluster	Similarity
Region 3.1	hserlactone	209,858	230,529
Region 4.1	ectoine	1	10,287	rhizomide A / rhizomide B / rhizomide C	NRP	100%
Region 4.2	RiPP-like	108,499	119,419
Region 11.1	terpene	142,521	167,507	malleobactin A / malleobactin B / malleobactin C / malleobactin D	NRP:NRP siderophore	7%
Region 11.2	redox-cofactor	903,461	925,742
Region 11.3	RiPP-like,NRPS	1,224,258	1,273,748
Region 12.1	phosphonate	1	30,965
Region 15.1	hserlactone	63,026	78,654
Region 31.1	NRPS-like	1	15,246	luminmide	NRP	100%
Region 40.1	NRPS	1	4,208	rhizomide A / rhizomide B / rhizomide C	NRP	100%
Region 46.1	NRPS	1	2,354	luminmide	NRP	100%
Region 59.1	terpene	91,975	112,838
Region 60.1	NRPS	252,570	325,269	crochelin A	NRP + Polyketide	23%

No secondary metabolite regions were found in these records:: c00001_NZ_JARF.. (original name was: NZ_JARFMK010000010.1); c00002_NZ_JARF.. (original name was: NZ_JARFMK010000011.1); c00005_NZ_JARF.. (original name was: NZ_JARFMK010000014.1); c00006_NZ_JARF.. (original name was: NZ_JARFMK010000015.1); c00007_NZ_JARF.. (original name was: NZ_JARFMK010000016.1); c00008_NZ_JARF.. (original name was: NZ_JARFMK010000017.1); c00009_NZ_JARF.. (original name was: NZ_JARFMK010000018.1); c00010_NZ_JARF.. (original name was: NZ_JARFMK010000019.1); c00013_NZ_JARF.. (original name was: NZ_JARFMK010000021.1); c00014_NZ_JARF.. (original name was: NZ_JARFMK010000022.1); c00016_NZ_JARF.. (original name was: NZ_JARFMK010000024.1); c00017_NZ_JARF.. (original name was: NZ_JARFMK010000025.1); c00018_NZ_JARF.. (original name was: NZ_JARFMK010000026.1); c00019_NZ_JARF.. (original name was: NZ_JARFMK010000027.1); c00020_NZ_JARF.. (original name was: NZ_JARFMK010000028.1); c00021_NZ_JARF.. (original name was: NZ_JARFMK010000029.1); c00022_NZ_JARF.. (original name was: NZ_JARFMK010000002.1); c00023_NZ_JARF.. (original name was: NZ_JARFMK010000030.1); c00024_NZ_JARF.. (original name was: NZ_JARFMK010000031.1); c00025_NZ_JARF.. (original name was: NZ_JARFMK010000032.1); c00026_NZ_JARF.. (original name was: NZ_JARFMK010000033.1); c00027_NZ_JARF.. (original name was: NZ_JARFMK010000034.1); c00028_NZ_JARF.. (original name was: NZ_JARFMK010000035.1); c00029_NZ_JARF.. (original name was: NZ_JARFMK010000036.1); c00030_NZ_JARF.. (original name was: NZ_JARFMK010000037.1); c00032_NZ_JARF.. (original name was: NZ_JARFMK010000039.1); c00033_NZ_JARF.. (original name was: NZ_JARFMK010000003.1); c00034_NZ_JARF.. (original name was: NZ_JARFMK010000040.1); c00035_NZ_JARF.. (original name was: NZ_JARFMK010000041.1); c00036_NZ_JARF.. (original name was: NZ_JARFMK010000042.1); c00037_NZ_JARF.. (original name was: NZ_JARFMK010000043.1); c00038_NZ_JARF.. (original name was: NZ_JARFMK010000044.1); c00039_NZ_JARF.. (original name was: NZ_JARFMK010000045.1); c00041_NZ_JARF.. (original name was: NZ_JARFMK010000047.1); c00042_NZ_JARF.. (original name was: NZ_JARFMK010000048.1); c00043_NZ_JARF.. (original name was: NZ_JARFMK010000049.1); c00044_NZ_JARF.. (original name was: NZ_JARFMK010000004.1); c00045_NZ_JARF.. (original name was: NZ_JARFMK010000050.1); c00047_NZ_JARF.. (original name was: NZ_JARFMK010000052.1); c00048_NZ_JARF.. (original name was: NZ_JARFMK010000053.1); c00049_NZ_JARF.. (original name was: NZ_JARFMK010000054.1); c00050_NZ_JARF.. (original name was: NZ_JARFMK010000055.1); c00051_NZ_JARF.. (original name was: NZ_JARFMK010000056.1); c00052_NZ_JARF.. (original name was: NZ_JARFMK010000057.1); c00053_NZ_JARF.. (original name was: NZ_JARFMK010000058.1); c00054_NZ_JARF.. (original name was: NZ_JARFMK010000059.1); c00055_NZ_JARF.. (original name was: NZ_JARFMK010000005.1); c00056_NZ_JARF.. (original name was: NZ_JARFMK010000060.1); c00057_NZ_JARF.. (original name was: NZ_JARFMK010000061.1); c00058_NZ_JARF.. (original name was: NZ_JARFMK010000006.1); c00061_NZ_JARF.. (original name was: NZ_JARFMK010000009.1)

Compact view

c00003_NZ_JARF.. - Region 1 - hserlactone

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Location: 209,858 - 230,529 nt. (total: 20,672 nt) Show pHMM detection rules used

hserlactone: Autoind_synth

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core biosynthetic genes

additional biosynthetic genes

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TTA codons

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TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000519.1	0.17	RiPP	labyrinthopeptin A2, labyrinthopeptin A1, labyrinthopeptin A3	Actinomadura namibiensis
BGC0001579.1	0.16	RiPP	duramycin	Streptomyces cinnamoneus
BGC0000563.1	0.16	RiPP	venezuelin	Streptomyces venezuelae ATCC 10712
BGC0001660.1	0.16	RiPP	mathermycin	Marinactinospora thermotolerans
BGC0000527.1	0.16	RiPP	mersacidin	Bacillus sp. HIL-Y85/54728
BGC0001551.1	0.16	RiPP	citrulassin E	Streptomyces glaucescens
BGC0000551.1	0.16	RiPP	SapB	Streptomyces coelicolor A3(2)
BGC0000502.1	0.16	RiPP	cerecidin, cerecidin A1, cerecidin A2, cerecidin A3, cerecidin A4, cerecidin A5, cerecidin A6, cerecidin A7	Bacillus cereus
BGC0000592.1	0.16	RiPP	microviridin B	Microcystis aeruginosa NIES-298
BGC0000600.1	0.16	RiPP	thurincin H	Bacillus thuringiensis

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000519.1	0.47	RiPP	labyrinthopeptin A2, labyrinthopeptin A1, labyrinthopeptin A3	Actinomadura namibiensis
BGC0001579.1	0.47	RiPP	duramycin	Streptomyces cinnamoneus
BGC0000563.1	0.47	RiPP	venezuelin	Streptomyces venezuelae ATCC 10712
BGC0001660.1	0.47	RiPP	mathermycin	Marinactinospora thermotolerans
BGC0000527.1	0.47	RiPP	mersacidin	Bacillus sp. HIL-Y85/54728
BGC0001551.1	0.47	RiPP	citrulassin E	Streptomyces glaucescens
BGC0000551.1	0.47	RiPP	SapB	Streptomyces coelicolor A3(2)
BGC0000502.1	0.47	RiPP	cerecidin, cerecidin A1, cerecidin A2, cerecidin A3, cerecidin A4, cerecidin A5, cerecidin A6, cerecidin A7	Bacillus cereus
BGC0000592.1	0.46	RiPP	microviridin B	Microcystis aeruginosa NIES-298
BGC0000600.1	0.46	RiPP	thurincin H	Bacillus thuringiensis

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

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Detailed TIGRFAM domain annotation

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c00004_NZ_JARF.. - Region 1 - ectoine

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Location: 1 - 10,287 nt. (total: 10,287 nt) Show pHMM detection rules used

Region on contig edge.

ectoine: ectoine_synt

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Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000859.1	0.27	Other	ectoine	Methylomicrobium alcaliphilum
BGC0000856.1	0.27	Other	ectoine	Methylophaga thalassica
BGC0000852.1	0.27	Other	ectoine	Sporosarcina pasteurii
BGC0000858.1	0.27	Other	ectoine	Methylobacter marinus
BGC0000855.1	0.27	Other	ectoine	Methylomicrobium kenyense
BGC0000854.1	0.21	Other	ectoine	Methylomicrobium alcaliphilum 20Z
BGC0000857.1	0.21	Other	ectoine	Methylophaga alcalica
BGC0000860.1	0.20	Other	ectoine	Methylarcula marina
BGC0000427.1	0.17	NRP	shinorine, 4-deoxygadusol, mycosporine glycine	Trichormus variabilis ATCC 29413
BGC0001758.1	0.16	NRP	rhizomide A, rhizomide B, rhizomide C	Paraburkholderia rhizoxinica HKI 454

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000859.1	0.61	Other	ectoine	Methylomicrobium alcaliphilum
BGC0000856.1	0.61	Other	ectoine	Methylophaga thalassica
BGC0000852.1	0.60	Other	ectoine	Sporosarcina pasteurii
BGC0000858.1	0.60	Other	ectoine	Methylobacter marinus
BGC0000855.1	0.60	Other	ectoine	Methylomicrobium kenyense
BGC0000854.1	0.54	Other	ectoine	Methylomicrobium alcaliphilum 20Z
BGC0000857.1	0.53	Other	ectoine	Methylophaga alcalica
BGC0000860.1	0.52	Other	ectoine	Methylarcula marina
BGC0000427.1	0.48	NRP	shinorine, 4-deoxygadusol, mycosporine glycine	Trichormus variabilis ATCC 29413
BGC0001758.1	0.47	NRP	rhizomide A, rhizomide B, rhizomide C	Paraburkholderia rhizoxinica HKI 454

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Detailed TIGRFAM domain annotation

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c00004_NZ_JARF.. - Region 2 - RiPP-like

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Location: 108,499 - 119,419 nt. (total: 10,921 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

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core biosynthetic genes

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regulatory genes

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Pfam domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001486.1	0.20	RiPP	3-thiaglutamate	Pseudomonas syringae pv. maculicola str. ES4326
BGC0002027.1	0.20	RiPP	TglA-thiaGlu	Pseudomonas syringae pv. maculicola str. ES4326
BGC0001607.1	0.13	Other	gilvusmycin	Streptomyces sp. NRRL B-1347
BGC0000608.1	0.12	RiPP	nocathiacin	Actinokineospora fastidiosa
BGC0000613.1	0.09	RiPP	thiomuracin A	Nonomuraea sp. Bp3714-39
BGC0001860.1	0.09	RiPP	thiomuracin	Thermobispora bispora DSM 43833
BGC0001707.1	0.08	RiPP	nosiheptide	Streptomyces sp.
BGC0000604.1	0.07	RiPP	GE2270A	Nonomuraea sp. WU8817
BGC0001155.1	0.06	RiPP	GE2270	Planobispora rosea
BGC0000610.1	0.06	RiPP	nosiheptide	Streptomyces actuosus

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001486.1	0.52	RiPP	3-thiaglutamate	Pseudomonas syringae pv. maculicola str. ES4326
BGC0002027.1	0.52	RiPP	TglA-thiaGlu	Pseudomonas syringae pv. maculicola str. ES4326
BGC0001607.1	0.41	Other	gilvusmycin	Streptomyces sp. NRRL B-1347
BGC0000608.1	0.40	RiPP	nocathiacin	Actinokineospora fastidiosa
BGC0000613.1	0.33	RiPP	thiomuracin A	Nonomuraea sp. Bp3714-39
BGC0001860.1	0.33	RiPP	thiomuracin	Thermobispora bispora DSM 43833
BGC0001707.1	0.31	RiPP	nosiheptide	Streptomyces sp.
BGC0000604.1	0.28	RiPP	GE2270A	Nonomuraea sp. WU8817
BGC0001155.1	0.27	RiPP	GE2270	Planobispora rosea
BGC0000610.1	0.26	RiPP	nosiheptide	Streptomyces actuosus

Similar known gene clusters

No matches found.

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c00011_NZ_JARF.. - Region 1 - terpene

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Location: 142,521 - 167,507 nt. (total: 24,987 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

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core biosynthetic genes

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Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000648.1	0.34	Terpene	carotenoid	Myxococcus xanthus
BGC0000646.1	0.24	Terpene	β-carotein	uncultured bacterium
BGC0000656.1	0.24	Terpene	zeaxanthin	Xanthobacter autotrophicus Py2
BGC0000859.1	0.24	Other	ectoine	Methylomicrobium alcaliphilum
BGC0000853.1	0.24	Other	ectoine	Streptomyces anulatus
BGC0000630.1	0.23	Terpene	(2R,3S,3'S)-2-hydroxyastaxanthin	Paracoccus haeundaensis
BGC0000856.1	0.23	Other	ectoine	Methylophaga thalassica
BGC0000640.1	0.23	Terpene	carotenoid	Enterobacteriaceae bacterium DC404
BGC0000641.1	0.21	Terpene	carotenoid	Enterobacteriaceae bacterium DC416
BGC0000639.1	0.21	Terpene	carotenoid	Enterobacteriaceae bacterium DC260

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000648.1	0.67	Terpene	carotenoid	Myxococcus xanthus
BGC0000646.1	0.58	Terpene	β-carotein	uncultured bacterium
BGC0000656.1	0.57	Terpene	zeaxanthin	Xanthobacter autotrophicus Py2
BGC0000859.1	0.57	Other	ectoine	Methylomicrobium alcaliphilum
BGC0000853.1	0.57	Other	ectoine	Streptomyces anulatus
BGC0000630.1	0.57	Terpene	(2R,3S,3'S)-2-hydroxyastaxanthin	Paracoccus haeundaensis
BGC0000856.1	0.57	Other	ectoine	Methylophaga thalassica
BGC0000640.1	0.56	Terpene	carotenoid	Enterobacteriaceae bacterium DC404
BGC0000641.1	0.54	Terpene	carotenoid	Enterobacteriaceae bacterium DC416
BGC0000639.1	0.53	Terpene	carotenoid	Enterobacteriaceae bacterium DC260

Similar known gene clusters

Detailed Pfam domain annotation

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Detailed TIGRFAM domain annotation

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c00011_NZ_JARF.. - Region 2 - redox-cofactor

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Location: 903,461 - 925,742 nt. (total: 22,282 nt) Show pHMM detection rules used

redox-cofactor: (cds(PF04055 and (TIGR04085 or SPASM)) and (TIGR02111 or TIGR03966) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]))

Legend:

core biosynthetic genes

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regulatory genes

other genes

resistance

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Gene details

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MIBiG comparison

KnownClusterBlast

Pfam domains

TIGRFAM domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001576.1	0.17	RiPP	divamide A	Prochloron didemni
BGC0000929.1	0.14	Other	xanthothricin	Burkholderia glumae
BGC0001959.1	0.14	Other	taylorflavin A, taylorflavin B	Streptomyces hiroshimensis
BGC0001973.1	0.14	Other	fervenulin	Streptomyces hiroshimensis
BGC0001972.1	0.14	Other	toxoflavin, fervenulin	Streptomyces hiroshimensis
BGC0001521.1	0.14	NRP	auriculamide	Herpetosiphon aurantiacus DSM 785
BGC0000906.1	0.13	Other	heme D1	Heliophilum fasciatum
BGC0001100.1	0.10	NRP, Polyketide	lankacidin C	Streptomyces rochei
BGC0001940.1	0.09	Polyketide	pyxidicycline A, pyxidicycline B	Pyxidicoccus fallax
BGC0000111.1	0.09	Polyketide	neocarzilin A, neocarzilin B	Streptomyces carzinostaticus

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001576.1	0.48	RiPP	divamide A	Prochloron didemni
BGC0000929.1	0.44	Other	xanthothricin	Burkholderia glumae
BGC0001959.1	0.44	Other	taylorflavin A, taylorflavin B	Streptomyces hiroshimensis
BGC0001973.1	0.43	Other	fervenulin	Streptomyces hiroshimensis
BGC0001972.1	0.43	Other	toxoflavin, fervenulin	Streptomyces hiroshimensis
BGC0001521.1	0.43	NRP	auriculamide	Herpetosiphon aurantiacus DSM 785
BGC0000906.1	0.42	Other	heme D1	Heliophilum fasciatum
BGC0001100.1	0.35	NRP, Polyketide	lankacidin C	Streptomyces rochei
BGC0001940.1	0.34	Polyketide	pyxidicycline A, pyxidicycline B	Pyxidicoccus fallax
BGC0000111.1	0.33	Polyketide	neocarzilin A, neocarzilin B	Streptomyces carzinostaticus

Similar known gene clusters

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Detailed Pfam domain annotation

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Detailed TIGRFAM domain annotation

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c00011_NZ_JARF.. - Region 3 - NRPS,RiPP-like

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Location: 1,224,258 - 1,273,748 nt. (total: 49,491 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)
NRPS: cds(Condensation and (AMP-binding or A-OX))

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core biosynthetic genes

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Detailed domain annotation

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Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000457.1	0.32	NRP	vicibactin	Rhizobium etli CFN 42
BGC0001197.1	0.30	Polyketide	frankiamicin	Frankia sp. EAN1pec
BGC0001687.1	0.28	Other	N-tetradecanoyl tyrosine	uncultured bacterium CSL12
BGC0000204.1	0.28	Polyketide	benastatin A, benastatin B, BE-43767, TAN1532B	Streptomyces sp. A2991200
BGC0001479.1	0.27	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102
BGC0001820.1	0.27	NRP	verticillin	Gliocladium sp.
BGC0001585.1	0.27	Alkaloid	melinacidin IV	Escovopsis weberi
BGC0000321.1	0.26	NRP	chaetocin	Collariella virescens
BGC0000979.1	0.26	NRP, Polyketide	cylindrospermopsin	Aphanizomenon sp. 10E9
BGC0000980.1	0.26	NRP, Polyketide	cylindrospermopsin	Aphanizomenon sp. 22D11

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000457.1	0.65	NRP	vicibactin	Rhizobium etli CFN 42
BGC0001479.1	0.61	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102
BGC0001820.1	0.60	NRP	verticillin	Gliocladium sp.
BGC0001585.1	0.60	Alkaloid	melinacidin IV	Escovopsis weberi
BGC0000321.1	0.60	NRP	chaetocin	Collariella virescens
BGC0000979.1	0.59	NRP, Polyketide	cylindrospermopsin	Aphanizomenon sp. 10E9
BGC0000980.1	0.59	NRP, Polyketide	cylindrospermopsin	Aphanizomenon sp. 22D11
BGC0000342.1	0.59	NRP	enniatin	Fusarium equiseti
BGC0001132.1	0.59	NRP	xenotetrapeptide	Xenorhabdus nematophila ATCC 19061
BGC0001128.1	0.59	NRP	luminmide	Photorhabdus laumondii subsp. laumondii TTO1

Similar known gene clusters

No matches found.

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Detailed Pfam domain annotation

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Detailed TIGRFAM domain annotation

Selected features only

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NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 3, location 1224257 - 1273748:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X - X)

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 5, location 1227304 - 1273748:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X - X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg11_1157

Search NORINE for peptide: strict or relaxed

AMP-binding (34..430): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophobic-aromatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: ahSTrAtsqK
Nearest Stachelhaus code:: bht
Stachelhaus code match:: 40% (weak)

AMP-binding (1089..1500): X

NRPSPredictor2: asp, asn, glu, gln, aad

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: ViWeItadDK
Nearest Stachelhaus code:: ala-b
Stachelhaus code match:: 50% (weak)

c00012_NZ_JARF.. - Region 1 - phosphonate

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Location: 1 - 30,965 nt. (total: 30,965 nt) Show pHMM detection rules used

Region on contig edge.

phosphonate: phosphonates

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Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001859.1	0.27	Other (Phosphonate)	fosfomycin	Pseudomonas syringae
BGC0000897.1	0.26	Other	dehydrophos	Streptomyces luridus
BGC0000937.1	0.18	Other	fosfazinomycin A	Streptomyces sp. WM6372
BGC0000904.1	0.16	Other	FR-900098	Streptomyces rubellomurinus
BGC0001485.1	0.16	Other	3-demethylchuangxinmycin	Actinoplanes tsinanensis
BGC0001546.1	0.16	Alkaloid	chuangxinmycin	Actinoplanes tsinanensis
BGC0001735.1	0.15	Other	pentostatine, vidarabine	Streptomyces antibioticus
BGC0001411.1	0.15	Saccharide	polysaccharide B	Bacteroides fragilis
BGC0001120.1	0.15	NRP, Polyketide	burkholderic acid	Burkholderia thailandensis E264
BGC0001374.1	0.14	Other	thienodolin	Streptomyces albogriseolus

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001859.1	0.61	Other (Phosphonate)	fosfomycin	Pseudomonas syringae
BGC0000897.1	0.60	Other	dehydrophos	Streptomyces luridus
BGC0000937.1	0.49	Other	fosfazinomycin A	Streptomyces sp. WM6372
BGC0000904.1	0.47	Other	FR-900098	Streptomyces rubellomurinus
BGC0001485.1	0.46	Other	3-demethylchuangxinmycin	Actinoplanes tsinanensis
BGC0001546.1	0.46	Alkaloid	chuangxinmycin	Actinoplanes tsinanensis
BGC0001735.1	0.46	Other	pentostatine, vidarabine	Streptomyces antibioticus
BGC0001411.1	0.45	Saccharide	polysaccharide B	Bacteroides fragilis
BGC0001120.1	0.44	NRP, Polyketide	burkholderic acid	Burkholderia thailandensis E264
BGC0001374.1	0.44	Other	thienodolin	Streptomyces albogriseolus

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

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Detailed TIGRFAM domain annotation

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c00015_NZ_JARF.. - Region 1 - hserlactone

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Location: 63,026 - 78,654 nt. (total: 15,629 nt) Show pHMM detection rules used

Region on contig edge.

hserlactone: Autoind_synth

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Pfam domains

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Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000944.1	0.11	Other (Non-NRP siderophore)	staphyloferrin A	Staphylococcus aureus subsp. aureus NCTC 8325
BGC0001408.1	0.09	Other	xanthoferrin	Xanthomonas oryzae pv. oryzae KACC 10331
BGC0001131.1	0.08	NRP	ambactin	Xenorhabdus miraniensis
BGC0000329.1	0.06	NRP	corpeptin A, corpeptin B	Pseudomonas corrugata
BGC0001692.1	0.06	NRP	nematophin	Xenorhabdus nematophila ATCC 19061
BGC0000417.1	0.05	NRP	rhodochelin	Rhodococcus jostii RHA1
BGC0000961.1	0.04	NRP, Polyketide	bactobolin	Burkholderia thailandensis E264
BGC0001790.1	0.04	NRP	sulfazecin	Pseudomonas acidophila

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000944.1	0.37	Other (Non-NRP siderophore)	staphyloferrin A	Staphylococcus aureus subsp. aureus NCTC 8325
BGC0001408.1	0.33	Other	xanthoferrin	Xanthomonas oryzae pv. oryzae KACC 10331
BGC0001131.1	0.31	NRP	ambactin	Xenorhabdus miraniensis
BGC0000329.1	0.25	NRP	corpeptin A, corpeptin B	Pseudomonas corrugata
BGC0001692.1	0.25	NRP	nematophin	Xenorhabdus nematophila ATCC 19061
BGC0000417.1	0.23	NRP	rhodochelin	Rhodococcus jostii RHA1
BGC0000961.1	0.20	NRP, Polyketide	bactobolin	Burkholderia thailandensis E264
BGC0001790.1	0.18	NRP	sulfazecin	Pseudomonas acidophila

Similar known gene clusters

No matches found.

Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

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c00031_NZ_JARF.. - Region 1 - NRPS-like

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Location: 1 - 15,246 nt. (total: 15,246 nt) Show pHMM detection rules used

Region on contig edge.

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

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Pfam domains

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Selected features only

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Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000427.1	0.22	NRP	shinorine, 4-deoxygadusol, mycosporine glycine	Trichormus variabilis ATCC 29413
BGC0001758.1	0.22	NRP	rhizomide A, rhizomide B, rhizomide C	Paraburkholderia rhizoxinica HKI 454
BGC0001844.1	0.22	NRP	holrhizin	Paraburkholderia rhizoxinica HKI 454
BGC0001135.1	0.22	NRP	bicornutin A1, bicornutin A2	Xenorhabdus budapestensis
BGC0001641.1	0.22	NRP	kolossin	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001833.1	0.21	NRP	icosalide A, icosalide B	Burkholderia gladioli
BGC0001132.1	0.21	NRP	xenotetrapeptide	Xenorhabdus nematophila ATCC 19061
BGC0001479.1	0.20	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102
BGC0001128.1	0.20	NRP	luminmide	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001825.1	0.19	NRP	xenematide	Xenorhabdus nematophila AN6/1

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000427.1	0.55	NRP	shinorine, 4-deoxygadusol, mycosporine glycine	Trichormus variabilis ATCC 29413
BGC0001758.1	0.55	NRP	rhizomide A, rhizomide B, rhizomide C	Paraburkholderia rhizoxinica HKI 454
BGC0001844.1	0.55	NRP	holrhizin	Paraburkholderia rhizoxinica HKI 454
BGC0001135.1	0.54	NRP	bicornutin A1, bicornutin A2	Xenorhabdus budapestensis
BGC0001641.1	0.54	NRP	kolossin	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001833.1	0.53	NRP	icosalide A, icosalide B	Burkholderia gladioli
BGC0001132.1	0.53	NRP	xenotetrapeptide	Xenorhabdus nematophila ATCC 19061
BGC0001479.1	0.53	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102
BGC0001128.1	0.53	NRP	luminmide	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001825.1	0.51	NRP	xenematide	Xenorhabdus nematophila AN6/1

Similar known gene clusters

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Detailed Pfam domain annotation

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Detailed TIGRFAM domain annotation

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NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 15246:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (phe)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg31_1

Search NORINE for peptide: strict or relaxed

AMP-binding (1..395): phe

NRPSPredictor2: phe

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aromatic
Large clusters prediction:: phe, trp, phg, tyr, bht
Small clusters prediction:: phe, trp
Single AA prediction:: phe

Stachelhaus prediction details:

Stachelhaus sequence:: DAWTIAAvCK
Nearest Stachelhaus code:: phe
Stachelhaus code match:: 90% (moderate)

c00040_NZ_JARF.. - Region 1 - NRPS

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Location: 1 - 4,208 nt. (total: 4,208 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

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Pfam domains

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Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001249.1	0.31	NRP	dimethylcoprogen	Alternaria alternata
BGC0001479.1	0.29	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102
BGC0001132.1	0.28	NRP	xenotetrapeptide	Xenorhabdus nematophila ATCC 19061
BGC0001135.1	0.28	NRP	bicornutin A1, bicornutin A2	Xenorhabdus budapestensis
BGC0001128.1	0.27	NRP	luminmide	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001641.1	0.26	NRP	kolossin	Photorhabdus laumondii subsp. laumondii TTO1
BGC0000375.1	0.26	NRP	indigoidine	Streptomyces chromofuscus
BGC0001844.1	0.25	NRP	holrhizin	Paraburkholderia rhizoxinica HKI 454
BGC0001758.1	0.25	NRP	rhizomide A, rhizomide B, rhizomide C	Paraburkholderia rhizoxinica HKI 454
BGC0001833.1	0.24	NRP	icosalide A, icosalide B	Burkholderia gladioli

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001249.1	0.64	NRP	dimethylcoprogen	Alternaria alternata
BGC0001479.1	0.62	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102
BGC0001132.1	0.61	NRP	xenotetrapeptide	Xenorhabdus nematophila ATCC 19061
BGC0001135.1	0.61	NRP	bicornutin A1, bicornutin A2	Xenorhabdus budapestensis
BGC0001128.1	0.61	NRP	luminmide	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001641.1	0.60	NRP	kolossin	Photorhabdus laumondii subsp. laumondii TTO1
BGC0000375.1	0.59	NRP	indigoidine	Streptomyces chromofuscus
BGC0001844.1	0.59	NRP	holrhizin	Paraburkholderia rhizoxinica HKI 454
BGC0001758.1	0.59	NRP	rhizomide A, rhizomide B, rhizomide C	Paraburkholderia rhizoxinica HKI 454
BGC0001833.1	0.57	NRP	icosalide A, icosalide B	Burkholderia gladioli

Similar known gene clusters

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Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 4208:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg40_1

Search NORINE for peptide: strict or relaxed

AMP-binding (1..390): X

NRPSPredictor2: (unknown)

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: ile

Stachelhaus prediction details:

Stachelhaus sequence:: DAFFLGCtFK
Nearest Stachelhaus code:: leu
Stachelhaus code match:: 90% (moderate)

AMP-binding (1057..1402): ser

NRPSPredictor2: ser

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: ser
Single AA prediction:: ser

Stachelhaus prediction details:

Stachelhaus sequence:: DVWHVSLIDK
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 100% (strong)

c00046_NZ_JARF.. - Region 1 - NRPS

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Location: 1 - 2,354 nt. (total: 2,354 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

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TTA codons

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Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001128.1	0.27	NRP	luminmide	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001641.1	0.27	NRP	kolossin	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001132.1	0.27	NRP	xenotetrapeptide	Xenorhabdus nematophila ATCC 19061
BGC0001758.1	0.27	NRP	rhizomide A, rhizomide B, rhizomide C	Paraburkholderia rhizoxinica HKI 454
BGC0001135.1	0.26	NRP	bicornutin A1, bicornutin A2	Xenorhabdus budapestensis
BGC0001833.1	0.26	NRP	icosalide A, icosalide B	Burkholderia gladioli
BGC0001479.1	0.24	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102
BGC0001844.1	0.22	NRP	holrhizin	Paraburkholderia rhizoxinica HKI 454
BGC0000357.1	0.21	NRP	cyclo-(D-Phe-L-Phe-D-Val-L-Val), cyclo-(D-Tyr-L-Phe-D-Val-L-Val), cyclo-(D-Tyr-L-Trp-D-Val-L-Val), cyclo-(D-Phe-L-Trp-D-Val-L-Val), cyclo-(D-Phe-L-Phe-D-Val-L-Ile), cyclo-(D-Phe-L-Phe-D-Ile-L-Val), cyclo-(D-Tyr-L-Trp-D-Val-L-Ile), cyclo-(D-Tyr-L-Trp-D-Ile-L-Val), cyclo-(D-Tyr-L-Phe-D-Val-L-Ile), cyclo-(D-Tyr-L-Phe-D-Ile-L-Val)	Penicillium rubens Wisconsin 54-1255
BGC0001825.1	0.21	NRP	xenematide	Xenorhabdus nematophila AN6/1

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001128.1	0.60	NRP	luminmide	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001641.1	0.60	NRP	kolossin	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001132.1	0.60	NRP	xenotetrapeptide	Xenorhabdus nematophila ATCC 19061
BGC0001758.1	0.60	NRP	rhizomide A, rhizomide B, rhizomide C	Paraburkholderia rhizoxinica HKI 454
BGC0001135.1	0.60	NRP	bicornutin A1, bicornutin A2	Xenorhabdus budapestensis
BGC0001833.1	0.59	NRP	icosalide A, icosalide B	Burkholderia gladioli
BGC0001479.1	0.57	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102
BGC0001844.1	0.55	NRP	holrhizin	Paraburkholderia rhizoxinica HKI 454
BGC0000357.1	0.54	NRP	cyclo-(D-Phe-L-Phe-D-Val-L-Val), cyclo-(D-Tyr-L-Phe-D-Val-L-Val), cyclo-(D-Tyr-L-Trp-D-Val-L-Val), cyclo-(D-Phe-L-Trp-D-Val-L-Val), cyclo-(D-Phe-L-Phe-D-Val-L-Ile), cyclo-(D-Phe-L-Phe-D-Ile-L-Val), cyclo-(D-Tyr-L-Trp-D-Val-L-Ile), cyclo-(D-Tyr-L-Trp-D-Ile-L-Val), cyclo-(D-Tyr-L-Phe-D-Val-L-Ile), cyclo-(D-Tyr-L-Phe-D-Ile-L-Val)	Penicillium rubens Wisconsin 54-1255
BGC0001825.1	0.54	NRP	xenematide	Xenorhabdus nematophila AN6/1

Similar known gene clusters

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c00059_NZ_JARF.. - Region 1 - terpene

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Location: 91,975 - 112,838 nt. (total: 20,864 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

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Pfam domains

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Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000294.1	0.15	NRP	acinetobactin	Acinetobacter baumannii
BGC0000703.1	0.15	Saccharide	kanamycin	Streptomyces kanamyceticus
BGC0000698.1	0.15	Saccharide	hygromycin A	Streptomyces hygroscopicus
BGC0001890.1	0.07	NRP	amphi-enterobactin 1, amphi-enterobactin 2, amphi-enterobactin 3, amphi-enterobactin 4	Vibrio campbellii ATCC BAA-1116
BGC0000319.1	0.06	NRP	cephamycin C	Streptomyces clavuligerus ATCC 27064
BGC0001653.1	0.06	Polyketide	linfuranone B, linfuranone C	Microbispora sp. GMKU363
BGC0000001.1	0.04	Polyketide	abyssomicin C, atrop-abyssomicin C	Verrucosispora maris AB-18-032
BGC0000133.1	0.04	Polyketide	quartromicin A1	Amycolatopsis orientalis
BGC0000354.1	0.03	NRP	friulimicin A, friulimicin B, friulimicin C, friulimicin D	Actinoplanes friuliensis
BGC0000269.1	0.03	Polyketide, Saccharide	SF2575	Streptomyces sp. SF2575

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000294.1	0.46	NRP	acinetobactin	Acinetobacter baumannii
BGC0000703.1	0.45	Saccharide	kanamycin	Streptomyces kanamyceticus
BGC0000698.1	0.45	Saccharide	hygromycin A	Streptomyces hygroscopicus
BGC0001890.1	0.28	NRP	amphi-enterobactin 1, amphi-enterobactin 2, amphi-enterobactin 3, amphi-enterobactin 4	Vibrio campbellii ATCC BAA-1116
BGC0000319.1	0.25	NRP	cephamycin C	Streptomyces clavuligerus ATCC 27064
BGC0001653.1	0.25	Polyketide	linfuranone B, linfuranone C	Microbispora sp. GMKU363
BGC0000001.1	0.19	Polyketide	abyssomicin C, atrop-abyssomicin C	Verrucosispora maris AB-18-032
BGC0000133.1	0.19	Polyketide	quartromicin A1	Amycolatopsis orientalis
BGC0000354.1	0.16	NRP	friulimicin A, friulimicin B, friulimicin C, friulimicin D	Actinoplanes friuliensis
BGC0000269.1	0.16	Polyketide, Saccharide	SF2575	Streptomyces sp. SF2575

Similar known gene clusters

No matches found.

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Detailed TIGRFAM domain annotation

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c00060_NZ_JARF.. - Region 1 - NRPS

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Location: 252,570 - 325,269 nt. (total: 72,700 nt) Show pHMM detection rules used

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

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Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000389.1	0.44	NRP	massetolide A	Pseudomonas fluorescens SS101
BGC0001833.1	0.37	NRP	icosalide A, icosalide B	Burkholderia gladioli
BGC0001128.1	0.36	NRP	luminmide	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001131.1	0.36	NRP	ambactin	Xenorhabdus miraniensis
BGC0001135.1	0.36	NRP	bicornutin A1, bicornutin A2	Xenorhabdus budapestensis
BGC0001758.1	0.36	NRP	rhizomide A, rhizomide B, rhizomide C	Paraburkholderia rhizoxinica HKI 454
BGC0001132.1	0.35	NRP	xenotetrapeptide	Xenorhabdus nematophila ATCC 19061
BGC0001844.1	0.35	NRP	holrhizin	Paraburkholderia rhizoxinica HKI 454
BGC0000417.1	0.34	NRP	rhodochelin	Rhodococcus jostii RHA1
BGC0001615.1	0.34	NRP	hexose-palythine-serine, hexose-shinorine	Heteroscytonema crispum UCFS10

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000389.1	0.75	NRP	massetolide A	Pseudomonas fluorescens SS101
BGC0001833.1	0.70	NRP	icosalide A, icosalide B	Burkholderia gladioli
BGC0001128.1	0.69	NRP	luminmide	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001131.1	0.69	NRP	ambactin	Xenorhabdus miraniensis
BGC0001135.1	0.69	NRP	bicornutin A1, bicornutin A2	Xenorhabdus budapestensis
BGC0001758.1	0.68	NRP	rhizomide A, rhizomide B, rhizomide C	Paraburkholderia rhizoxinica HKI 454
BGC0001132.1	0.68	NRP	xenotetrapeptide	Xenorhabdus nematophila ATCC 19061
BGC0001844.1	0.68	NRP	holrhizin	Paraburkholderia rhizoxinica HKI 454
BGC0000417.1	0.67	NRP	rhodochelin	Rhodococcus jostii RHA1
BGC0001615.1	0.67	NRP	hexose-palythine-serine, hexose-shinorine	Heteroscytonema crispum UCFS10

Similar known gene clusters

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Detailed Pfam domain annotation

Selected features only

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Detailed TIGRFAM domain annotation

Selected features only

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NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 252569 - 325269:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (D-asp - X) + (phe - gly) + (D-X - D-glu - gly - X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg60_236

Search NORINE for peptide: strict or relaxed

AMP-binding (518..916): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DgegSGgVtK
Nearest Stachelhaus code:: glu
Stachelhaus code match:: 50% (weak)

AMP-binding (2031..2433): glu

NRPSPredictor2: glu

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: glu, gln
Single AA prediction:: glu

Stachelhaus prediction details:

Stachelhaus sequence:: DVWHFGRINK
Nearest Stachelhaus code:: glu
Stachelhaus code match:: 100% (strong)

AMP-binding (3540..3937): gly

NRPSPredictor2: gly

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: gly

Stachelhaus prediction details:

Stachelhaus sequence:: DILQLGLVWK
Nearest Stachelhaus code:: gly
Stachelhaus code match:: 100% (strong)

AMP-binding (4598..4994): X

NRPSPredictor2: asp, asn, glu, gln, aad

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DgegSGgVtK
Nearest Stachelhaus code:: glu
Stachelhaus code match:: 50% (weak)

ctg60_237

Search NORINE for peptide: strict or relaxed

AMP-binding (506..900): phe

NRPSPredictor2: phe

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aromatic
Large clusters prediction:: phe, trp, phg, tyr, bht
Small clusters prediction:: phe, trp
Single AA prediction:: phe

Stachelhaus prediction details:

Stachelhaus sequence:: DAWTvAGVCK
Nearest Stachelhaus code:: phe
Stachelhaus code match:: 90% (moderate)

AMP-binding (1586..1983): gly

NRPSPredictor2: gly

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: gly

Stachelhaus prediction details:

Stachelhaus sequence:: DILQLGLVWK
Nearest Stachelhaus code:: gly
Stachelhaus code match:: 100% (strong)

ctg60_238

Search NORINE for peptide: strict or relaxed

CAL_domain (35..472): pk

minowa: NH2

Prediction, score:

NH2: 151.4
AHBA: 7.1
shikimic_acid: 0.0
Acetyl-CoA: -1.6
fatty_acid: -2.8

AMP-binding (1129..1522): asp

NRPSPredictor2: asp

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asp

Stachelhaus prediction details:

Stachelhaus sequence:: DLTKVGHVGK
Nearest Stachelhaus code:: asp
Stachelhaus code match:: 100% (strong)

AMP-binding (2644..3047): X

NRPSPredictor2: hydrophilic

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DiefIGAIaK
Nearest Stachelhaus code:: leu
Stachelhaus code match:: 60% (weak)

ctg60_248

Search NORINE for peptide: strict or relaxed

AMP-binding (43..444): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: htNYraGfvK
Nearest Stachelhaus code:: orn
Stachelhaus code match:: 40% (weak)