GCF_000424065.1_ASM42406v1_genomic - 9 region(s)

Identified primary metabolite regions

NZ_AUJE01000001 (original name was: NZ_AUJE01000001.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 1.1	Fumarate2succinate	SCFA	88,831	111,508

NZ_AUJE01000002 (original name was: NZ_AUJE01000002.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 2.1	TPP_AA_metabolism	Putative	71,686	108,905

NZ_AUJE01000006 (original name was: NZ_AUJE01000006.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 6.1	succinate2propionate	SCFA	19,726	47,108	Succinate to propionate V. parvulla	PRO	100%

NZ_AUJE01000007 (original name was: NZ_AUJE01000007.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 7.1	Pyruvate2acetate-formate	SCFA	92,978	115,950	Pyruvate to acetate and formate C. acetobutylicum	PFL_acetate	100%

NZ_KE384127.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 11.1	Rnf_complex	E-MGC	49,144	74,764	Rnf complex C. sporogenes	RNF	83%

NZ_AUJE01000017 (original name was: NZ_AUJE01000017.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 15.1	Putrescine2spermidine	Aliphatic_amine	21,411	44,703	Putrescine2spermidine E. rectale	SPRM	100%

NZ_KE384128.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 21.1	porA	SCFA	168	22,873

NZ_AUJE01000030 (original name was: NZ_AUJE01000030.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 27.1	Others_HGD_unassigned	Putative	36,175	54,256

NZ_AUJE01000038 (original name was: NZ_AUJE01000038.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 34.1	Fumarate2succinate	SCFA	1	26,735	PFOR II pathway B. thetaiotaomicron	PFORII	100%

Region	Type	Class	From	To	Most similar known cluster	Similarity
Region 1.1	Fumarate2succinate	SCFA	88,831	111,508
Region 2.1	TPP_AA_metabolism	Putative	71,686	108,905
Region 6.1	succinate2propionate	SCFA	19,726	47,108	Succinate to propionate V. parvulla	PRO	100%
Region 7.1	Pyruvate2acetate-formate	SCFA	92,978	115,950	Pyruvate to acetate and formate C. acetobutylicum	PFL_acetate	100%
Region 11.1	Rnf_complex	E-MGC	49,144	74,764	Rnf complex C. sporogenes	RNF	83%
Region 15.1	Putrescine2spermidine	Aliphatic_amine	21,411	44,703	Putrescine2spermidine E. rectale	SPRM	100%
Region 21.1	porA	SCFA	168	22,873
Region 27.1	Others_HGD_unassigned	Putative	36,175	54,256
Region 34.1	Fumarate2succinate	SCFA	1	26,735	PFOR II pathway B. thetaiotaomicron	PFORII	100%

No primary metabolite regions were found in these records:: NZ_AUJE01000003 (original name was: NZ_AUJE01000003.1); NZ_AUJE01000004 (original name was: NZ_AUJE01000004.1); NZ_AUJE01000005 (original name was: NZ_AUJE01000005.1); NZ_KE384126.1; NZ_AUJE01000010 (original name was: NZ_AUJE01000010.1); NZ_AUJE01000011 (original name was: NZ_AUJE01000011.1); NZ_AUJE01000014 (original name was: NZ_AUJE01000014.1); NZ_AUJE01000015 (original name was: NZ_AUJE01000015.1); NZ_AUJE01000016 (original name was: NZ_AUJE01000016.1); NZ_AUJE01000018 (original name was: NZ_AUJE01000018.1); NZ_AUJE01000019 (original name was: NZ_AUJE01000019.1); NZ_AUJE01000020 (original name was: NZ_AUJE01000020.1); NZ_AUJE01000021 (original name was: NZ_AUJE01000021.1); NZ_AUJE01000022 (original name was: NZ_AUJE01000022.1); NZ_AUJE01000025 (original name was: NZ_AUJE01000025.1); NZ_AUJE01000026 (original name was: NZ_AUJE01000026.1); NZ_AUJE01000027 (original name was: NZ_AUJE01000027.1); NZ_AUJE01000028 (original name was: NZ_AUJE01000028.1); NZ_AUJE01000029 (original name was: NZ_AUJE01000029.1); NZ_AUJE01000031 (original name was: NZ_AUJE01000031.1); NZ_KE384129.1; NZ_AUJE01000034 (original name was: NZ_AUJE01000034.1); NZ_AUJE01000035 (original name was: NZ_AUJE01000035.1); NZ_AUJE01000036 (original name was: NZ_AUJE01000036.1); NZ_AUJE01000037 (original name was: NZ_AUJE01000037.1); NZ_AUJE01000039 (original name was: NZ_AUJE01000039.1); NZ_AUJE01000040 (original name was: NZ_AUJE01000040.1); NZ_AUJE01000041 (original name was: NZ_AUJE01000041.1); NZ_AUJE01000042 (original name was: NZ_AUJE01000042.1); NZ_AUJE01000043 (original name was: NZ_AUJE01000043.1); NZ_AUJE01000044 (original name was: NZ_AUJE01000044.1); NZ_AUJE01000045 (original name was: NZ_AUJE01000045.1); NZ_AUJE01000046 (original name was: NZ_AUJE01000046.1); NZ_AUJE01000047 (original name was: NZ_AUJE01000047.1); NZ_AUJE01000048 (original name was: NZ_AUJE01000048.1); NZ_AUJE01000049 (original name was: NZ_AUJE01000049.1); NZ_AUJE01000050 (original name was: NZ_AUJE01000050.1); NZ_AUJE01000051 (original name was: NZ_AUJE01000051.1); NZ_AUJE01000052 (original name was: NZ_AUJE01000052.1); NZ_AUJE01000053 (original name was: NZ_AUJE01000053.1); NZ_AUJE01000054 (original name was: NZ_AUJE01000054.1); NZ_AUJE01000055 (original name was: NZ_AUJE01000055.1); NZ_AUJE01000056 (original name was: NZ_AUJE01000056.1); NZ_AUJE01000057 (original name was: NZ_AUJE01000057.1); NZ_AUJE01000058 (original name was: NZ_AUJE01000058.1); NZ_AUJE01000059 (original name was: NZ_AUJE01000059.1); NZ_AUJE01000060 (original name was: NZ_AUJE01000060.1); NZ_AUJE01000061 (original name was: NZ_AUJE01000061.1); NZ_AUJE01000062 (original name was: NZ_AUJE01000062.1); NZ_AUJE01000063 (original name was: NZ_AUJE01000063.1); NZ_AUJE01000064 (original name was: NZ_AUJE01000064.1); NZ_AUJE01000065 (original name was: NZ_AUJE01000065.1); NZ_AUJE01000066 (original name was: NZ_AUJE01000066.1); NZ_AUJE01000067 (original name was: NZ_AUJE01000067.1); NZ_AUJE01000068 (original name was: NZ_AUJE01000068.1); NZ_AUJE01000069 (original name was: NZ_AUJE01000069.1); NZ_AUJE01000070 (original name was: NZ_AUJE01000070.1); NZ_AUJE01000071 (original name was: NZ_AUJE01000071.1)

Compact view

c00001_NZ_AUJE.. - Region 1 - Fumarate2succinate

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Location: 88,831 - 111,508 nt. (total: 22,678 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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c00002_NZ_AUJE.. - Region 1 - TPP_AA_metabolism

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Location: 71,686 - 108,905 nt. (total: 37,220 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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c00006_NZ_AUJE.. - Region 1 - succinate2propionate

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Location: 19,726 - 47,108 nt. (total: 27,383 nt) Show pHMM detection rules used

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

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c00007_NZ_AUJE.. - Region 1 - Pyruvate2acetate-formate

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Location: 92,978 - 115,950 nt. (total: 22,973 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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NZ_KE384127.1 - Region 1 - Rnf_complex

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Location: 49,144 - 74,764 nt. (total: 25,621 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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c00015_NZ_AUJE.. - Region 1 - Putrescine2spermidine

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Location: 21,411 - 44,703 nt. (total: 23,293 nt) Show pHMM detection rules used

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

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NZ_KE384128.1 - Region 1 - porA

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Location: 168 - 22,873 nt. (total: 22,706 nt) Show pHMM detection rules used

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

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c00027_NZ_AUJE.. - Region 1 - Others_HGD_unassigned

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Location: 36,175 - 54,256 nt. (total: 18,082 nt) Show pHMM detection rules used

Region on contig edge.

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

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c00034_NZ_AUJE.. - Region 1 - Fumarate2succinate

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Location: 1 - 26,735 nt. (total: 26,735 nt) Show pHMM detection rules used

Region on contig edge.

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

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