GCF_900248245.1_Amuris69_genomic - 6 region(s)

Identified primary metabolite regions

NZ_OFSM01000006 (original name was: NZ_OFSM01000006.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 49.1	Putrescine2spermidine	Aliphatic_amine	224,119	239,985	Putrescine2spermidine E. rectale	SPRM	60%

NZ_OFSM01000016 (original name was: NZ_OFSM01000016.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 56.1	acetate2butyrate	SCFA	26,165	52,948	Acetate to butyrate C. sporogenes	BUT	100%

NZ_OFSM01000010 (original name was: NZ_OFSM01000010.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 59.1	GR_eut-pdu-related	Putative	59,886	92,860	Propanediol degradation S. enterica	PDU	41%

NZ_OFSM01000011 (original name was: NZ_OFSM01000011.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 67.1	TPP_AA_metabolism	Putative	123,179	156,728

NZ_OFSM01000026 (original name was: NZ_OFSM01000026.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 73.1	Others_HGD_unassigned	Putative	23,286	47,584

NZ_OFSM01000003 (original name was: NZ_OFSM01000003.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 125.1	succinate2propionate,Rnf_complex	E-MGC	18,695	55,714	Rnf complex C. sporogenes	RNF	83%

No primary metabolite regions were found in these records:: NZ_OFSM01000143 (original name was: NZ_OFSM01000143.1); NZ_OFSM01000142 (original name was: NZ_OFSM01000142.1); NZ_OFSM01000140 (original name was: NZ_OFSM01000140.1); NZ_OFSM01000139 (original name was: NZ_OFSM01000139.1); NZ_OFSM01000137 (original name was: NZ_OFSM01000137.1); NZ_OFSM01000136 (original name was: NZ_OFSM01000136.1); NZ_OFSM01000134 (original name was: NZ_OFSM01000134.1); NZ_OFSM01000131 (original name was: NZ_OFSM01000131.1); NZ_OFSM01000130 (original name was: NZ_OFSM01000130.1); NZ_OFSM01000128 (original name was: NZ_OFSM01000128.1); NZ_OFSM01000127 (original name was: NZ_OFSM01000127.1); NZ_OFSM01000124 (original name was: NZ_OFSM01000124.1); NZ_OFSM01000122 (original name was: NZ_OFSM01000122.1); NZ_OFSM01000121 (original name was: NZ_OFSM01000121.1); NZ_OFSM01000120 (original name was: NZ_OFSM01000120.1); NZ_OFSM01000119 (original name was: NZ_OFSM01000119.1); NZ_OFSM01000118 (original name was: NZ_OFSM01000118.1); NZ_OFSM01000116 (original name was: NZ_OFSM01000116.1); NZ_OFSM01000115 (original name was: NZ_OFSM01000115.1); NZ_OFSM01000123 (original name was: NZ_OFSM01000123.1); NZ_OFSM01000112 (original name was: NZ_OFSM01000112.1); NZ_OFSM01000111 (original name was: NZ_OFSM01000111.1); NZ_OFSM01000110 (original name was: NZ_OFSM01000110.1); NZ_OFSM01000109 (original name was: NZ_OFSM01000109.1); NZ_OFSM01000107 (original name was: NZ_OFSM01000107.1); NZ_OFSM01000106 (original name was: NZ_OFSM01000106.1); NZ_OFSM01000105 (original name was: NZ_OFSM01000105.1); NZ_OFSM01000104 (original name was: NZ_OFSM01000104.1); NZ_OFSM01000103 (original name was: NZ_OFSM01000103.1); NZ_OFSM01000102 (original name was: NZ_OFSM01000102.1); NZ_OFSM01000100 (original name was: NZ_OFSM01000100.1); NZ_OFSM01000098 (original name was: NZ_OFSM01000098.1); NZ_OFSM01000097 (original name was: NZ_OFSM01000097.1); NZ_OFSM01000045 (original name was: NZ_OFSM01000045.1); NZ_OFSM01000056 (original name was: NZ_OFSM01000056.1); NZ_OFSM01000013 (original name was: NZ_OFSM01000013.1); NZ_OFSM01000042 (original name was: NZ_OFSM01000042.1); NZ_OFSM01000039 (original name was: NZ_OFSM01000039.1); NZ_OFSM01000029 (original name was: NZ_OFSM01000029.1); NZ_OFSM01000132 (original name was: NZ_OFSM01000132.1); NZ_OFSM01000036 (original name was: NZ_OFSM01000036.1); NZ_OFSM01000034 (original name was: NZ_OFSM01000034.1); NZ_OFSM01000030 (original name was: NZ_OFSM01000030.1); NZ_OFSM01000002 (original name was: NZ_OFSM01000002.1); NZ_OFSM01000057 (original name was: NZ_OFSM01000057.1); NZ_OFSM01000095 (original name was: NZ_OFSM01000095.1); NZ_OFSM01000101 (original name was: NZ_OFSM01000101.1); NZ_OFSM01000028 (original name was: NZ_OFSM01000028.1); NZ_OFSM01000040 (original name was: NZ_OFSM01000040.1); NZ_OFSM01000048 (original name was: NZ_OFSM01000048.1); NZ_OFSM01000025 (original name was: NZ_OFSM01000025.1); NZ_OFSM01000022 (original name was: NZ_OFSM01000022.1); NZ_OFSM01000117 (original name was: NZ_OFSM01000117.1); NZ_OFSM01000032 (original name was: NZ_OFSM01000032.1); NZ_OFSM01000129 (original name was: NZ_OFSM01000129.1); NZ_OFSM01000035 (original name was: NZ_OFSM01000035.1); NZ_OFSM01000014 (original name was: NZ_OFSM01000014.1); NZ_OFSM01000043 (original name was: NZ_OFSM01000043.1); NZ_OFSM01000033 (original name was: NZ_OFSM01000033.1); NZ_OFSM01000046 (original name was: NZ_OFSM01000046.1); NZ_OFSM01000009 (original name was: NZ_OFSM01000009.1); NZ_OFSM01000054 (original name was: NZ_OFSM01000054.1); NZ_OFSM01000089 (original name was: NZ_OFSM01000089.1); NZ_OFSM01000069 (original name was: NZ_OFSM01000069.1); NZ_OFSM01000027 (original name was: NZ_OFSM01000027.1); NZ_OFSM01000012 (original name was: NZ_OFSM01000012.1); NZ_OFSM01000114 (original name was: NZ_OFSM01000114.1); NZ_OFSM01000051 (original name was: NZ_OFSM01000051.1); NZ_OFSM01000093 (original name was: NZ_OFSM01000093.1); NZ_OFSM01000038 (original name was: NZ_OFSM01000038.1); NZ_OFSM01000084 (original name was: NZ_OFSM01000084.1); NZ_OFSM01000015 (original name was: NZ_OFSM01000015.1); NZ_OFSM01000088 (original name was: NZ_OFSM01000088.1); NZ_OFSM01000065 (original name was: NZ_OFSM01000065.1); NZ_OFSM01000023 (original name was: NZ_OFSM01000023.1); NZ_OFSM01000141 (original name was: NZ_OFSM01000141.1); NZ_OFSM01000024 (original name was: NZ_OFSM01000024.1); NZ_OFSM01000078 (original name was: NZ_OFSM01000078.1); NZ_OFSM01000008 (original name was: NZ_OFSM01000008.1); NZ_OFSM01000126 (original name was: NZ_OFSM01000126.1); NZ_OFSM01000072 (original name was: NZ_OFSM01000072.1); NZ_OFSM01000075 (original name was: NZ_OFSM01000075.1); NZ_OFSM01000017 (original name was: NZ_OFSM01000017.1); NZ_OFSM01000031 (original name was: NZ_OFSM01000031.1); NZ_OFSM01000037 (original name was: NZ_OFSM01000037.1); NZ_OFSM01000020 (original name was: NZ_OFSM01000020.1); NZ_OFSM01000080 (original name was: NZ_OFSM01000080.1); NZ_OFSM01000004 (original name was: NZ_OFSM01000004.1); NZ_OFSM01000060 (original name was: NZ_OFSM01000060.1); NZ_OFSM01000047 (original name was: NZ_OFSM01000047.1); NZ_OFSM01000082 (original name was: NZ_OFSM01000082.1); NZ_OFSM01000049 (original name was: NZ_OFSM01000049.1); NZ_OFSM01000138 (original name was: NZ_OFSM01000138.1); NZ_OFSM01000007 (original name was: NZ_OFSM01000007.1); NZ_OFSM01000050 (original name was: NZ_OFSM01000050.1); NZ_OFSM01000021 (original name was: NZ_OFSM01000021.1); NZ_OFSM01000062 (original name was: NZ_OFSM01000062.1); NZ_OFSM01000076 (original name was: NZ_OFSM01000076.1); NZ_OFSM01000019 (original name was: NZ_OFSM01000019.1); NZ_OFSM01000085 (original name was: NZ_OFSM01000085.1); NZ_OFSM01000073 (original name was: NZ_OFSM01000073.1); NZ_OFSM01000059 (original name was: NZ_OFSM01000059.1); NZ_OFSM01000086 (original name was: NZ_OFSM01000086.1); NZ_OFSM01000058 (original name was: NZ_OFSM01000058.1); NZ_OFSM01000061 (original name was: NZ_OFSM01000061.1); NZ_OFSM01000063 (original name was: NZ_OFSM01000063.1); NZ_OFSM01000108 (original name was: NZ_OFSM01000108.1); NZ_OFSM01000064 (original name was: NZ_OFSM01000064.1); NZ_OFSM01000066 (original name was: NZ_OFSM01000066.1); NZ_OFSM01000135 (original name was: NZ_OFSM01000135.1); NZ_OFSM01000067 (original name was: NZ_OFSM01000067.1); NZ_OFSM01000133 (original name was: NZ_OFSM01000133.1); NZ_OFSM01000005 (original name was: NZ_OFSM01000005.1); NZ_OFSM01000068 (original name was: NZ_OFSM01000068.1); NZ_OFSM01000070 (original name was: NZ_OFSM01000070.1); NZ_OFSM01000055 (original name was: NZ_OFSM01000055.1); NZ_OFSM01000083 (original name was: NZ_OFSM01000083.1); NZ_OFSM01000074 (original name was: NZ_OFSM01000074.1); NZ_OFSM01000091 (original name was: NZ_OFSM01000091.1); NZ_OFSM01000077 (original name was: NZ_OFSM01000077.1); NZ_OFSM01000113 (original name was: NZ_OFSM01000113.1); NZ_OFSM01000053 (original name was: NZ_OFSM01000053.1); NZ_OFSM01000001 (original name was: NZ_OFSM01000001.1); NZ_OFSM01000079 (original name was: NZ_OFSM01000079.1); NZ_OFSM01000044 (original name was: NZ_OFSM01000044.1); NZ_OFSM01000081 (original name was: NZ_OFSM01000081.1); NZ_OFSM01000052 (original name was: NZ_OFSM01000052.1); NZ_OFSM01000087 (original name was: NZ_OFSM01000087.1); NZ_OFSM01000090 (original name was: NZ_OFSM01000090.1); NZ_OFSM01000071 (original name was: NZ_OFSM01000071.1); NZ_OFSM01000041 (original name was: NZ_OFSM01000041.1); NZ_OFSM01000094 (original name was: NZ_OFSM01000094.1); NZ_OFSM01000125 (original name was: NZ_OFSM01000125.1); NZ_OFSM01000092 (original name was: NZ_OFSM01000092.1); NZ_OFSM01000099 (original name was: NZ_OFSM01000099.1); NZ_OFSM01000018 (original name was: NZ_OFSM01000018.1); NZ_OFSM01000096 (original name was: NZ_OFSM01000096.1)

Compact view

c00049_NZ_OFSM.. - Region 1 - Putrescine2spermidine

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Location: 224,119 - 239,985 nt. (total: 15,867 nt) Show pHMM detection rules used

Region on contig edge.

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

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c00056_NZ_OFSM.. - Region 1 - acetate2butyrate

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Location: 26,165 - 52,948 nt. (total: 26,784 nt) Show pHMM detection rules used

acetate2butyrate: (not (POR or POR_N or PFOR_II) and minimum(4, [Acyl-CoA_dh_1, Acyl-CoA_dh_2, ECH_2, ETF, ETF_alpha, HCDH_N, Thiolase_N, ketoacyl-synt]) and HCDH and minimum(1, [EC1_2-faecali, ECH1_Enoyl_CoA_DH1, ECH1_Enoyl_CoA_DH2, ECH1_Enoyl_CoA_DH3, ECH1_Enoyl_CoA_DH4, Thiolase_C]))

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c00059_NZ_OFSM.. - Region 1 - GR_eut-pdu-related

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Location: 59,886 - 92,860 nt. (total: 32,975 nt) Show pHMM detection rules used

GR_eut-pdu-related: (minimum(1, [Gly_430_pcre, Gly_radical, Gly_radical_scatole, PFL-like, PFL_6_pcresol, PFL_acetate1, PFL_acetate2, PFL_proline, PFL_toluene]) and minimum(2, [Aldedh, EutN_CcmL, EutQ, PTAC, PduV-EutP]) and not (PFL_9_tma or Gly_8-9_TMA or NRDD) and not EutB and not EutC and not (POR or POR_N or PFOR_II))

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c00067_NZ_OFSM.. - Region 1 - TPP_AA_metabolism

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Location: 123,179 - 156,728 nt. (total: 33,550 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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c00073_NZ_OFSM.. - Region 1 - Others_HGD_unassigned

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Location: 23,286 - 47,584 nt. (total: 24,299 nt) Show pHMM detection rules used

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

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c00125_NZ_OFSM.. - Region 1 - Rnf_complex,succinate2propionate

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Location: 18,695 - 55,714 nt. (total: 37,020 nt) Show pHMM detection rules used

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)
Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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