GCF_900108035.1_IMG-taxon_2693429876_annotated_assembly_genomic - 6 region(s)

Identified primary metabolite regions

NZ_FNVS01000005 (original name was: NZ_FNVS01000005.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 14.1	Fumarate2succinate	SCFA	9,032	32,513	Fumarate to succinate B. thetaiotaomicron	SUC	100%

NZ_FNVS01000001 (original name was: NZ_FNVS01000001.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 19.1	porA	SCFA	22,801	45,696	porA C. sporogenes	POR	60%
Region 19.2	OD_AA_metabolism,PFOR_II_pathway	SCFA	168,137	211,250	PFOR II pathway B. thetaiotaomicron	PFORII	100%
Region 19.3	Rnf_complex	E-MGC	298,776	323,843	Rnf complex C. sporogenes	RNF	83%
Region 19.4	succinate2propionate	SCFA	427,483	452,055	Succinate to propionate B. theta	PRO	50%

NZ_FNVS01000003 (original name was: NZ_FNVS01000003.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 30.1	TPP_AA_metabolism	Putative	145,619	171,568

No primary metabolite regions were found in these records:: NZ_FNVS01000035 (original name was: NZ_FNVS01000035.1); NZ_FNVS01000033 (original name was: NZ_FNVS01000033.1); NZ_FNVS01000029 (original name was: NZ_FNVS01000029.1); NZ_FNVS01000027 (original name was: NZ_FNVS01000027.1); NZ_FNVS01000026 (original name was: NZ_FNVS01000026.1); NZ_FNVS01000038 (original name was: NZ_FNVS01000038.1); NZ_FNVS01000025 (original name was: NZ_FNVS01000025.1); NZ_FNVS01000024 (original name was: NZ_FNVS01000024.1); NZ_FNVS01000007 (original name was: NZ_FNVS01000007.1); NZ_FNVS01000030 (original name was: NZ_FNVS01000030.1); NZ_FNVS01000008 (original name was: NZ_FNVS01000008.1); NZ_FNVS01000036 (original name was: NZ_FNVS01000036.1); NZ_FNVS01000034 (original name was: NZ_FNVS01000034.1); NZ_FNVS01000021 (original name was: NZ_FNVS01000021.1); NZ_FNVS01000010 (original name was: NZ_FNVS01000010.1); NZ_FNVS01000018 (original name was: NZ_FNVS01000018.1); NZ_FNVS01000037 (original name was: NZ_FNVS01000037.1); NZ_FNVS01000004 (original name was: NZ_FNVS01000004.1); NZ_FNVS01000009 (original name was: NZ_FNVS01000009.1); NZ_FNVS01000016 (original name was: NZ_FNVS01000016.1); NZ_FNVS01000032 (original name was: NZ_FNVS01000032.1); NZ_FNVS01000020 (original name was: NZ_FNVS01000020.1); NZ_FNVS01000006 (original name was: NZ_FNVS01000006.1); NZ_FNVS01000023 (original name was: NZ_FNVS01000023.1); NZ_FNVS01000011 (original name was: NZ_FNVS01000011.1); NZ_FNVS01000028 (original name was: NZ_FNVS01000028.1); NZ_FNVS01000022 (original name was: NZ_FNVS01000022.1); NZ_FNVS01000017 (original name was: NZ_FNVS01000017.1); NZ_FNVS01000002 (original name was: NZ_FNVS01000002.1); NZ_FNVS01000031 (original name was: NZ_FNVS01000031.1); NZ_FNVS01000012 (original name was: NZ_FNVS01000012.1); NZ_FNVS01000013 (original name was: NZ_FNVS01000013.1); NZ_FNVS01000015 (original name was: NZ_FNVS01000015.1); NZ_FNVS01000014 (original name was: NZ_FNVS01000014.1); NZ_FNVS01000019 (original name was: NZ_FNVS01000019.1)

Compact view

c00014_NZ_FNVS.. - Region 1 - Fumarate2succinate

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Location: 9,032 - 32,513 nt. (total: 23,482 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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c00019_NZ_FNVS.. - Region 1 - porA

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Location: 22,801 - 45,696 nt. (total: 22,896 nt) Show pHMM detection rules used

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

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c00019_NZ_FNVS.. - Region 2 - OD_AA_metabolism,PFOR_II_pathway

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Location: 168,137 - 211,250 nt. (total: 43,114 nt) Show pHMM detection rules used

OD_AA_metabolism: (minimum(1, [PFOR_II, POR, POR_N]) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (Gly_radical_scatole or Gly_radical or Gly_430_pcre or Gly_8-9_TMA))
PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

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c00019_NZ_FNVS.. - Region 3 - Rnf_complex

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Location: 298,776 - 323,843 nt. (total: 25,068 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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c00019_NZ_FNVS.. - Region 4 - succinate2propionate

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Location: 427,483 - 452,055 nt. (total: 24,573 nt) Show pHMM detection rules used

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

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c00030_NZ_FNVS.. - Region 1 - TPP_AA_metabolism

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Location: 145,619 - 171,568 nt. (total: 25,950 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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