GCF_900129945.1_IMG-taxon_2585428068_annotated_assembly_genomic - 9 region(s)

Identified primary metabolite regions

NZ_FQXK01000019 (original name was: NZ_FQXK01000019.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 25.1	succinate2propionate	SCFA	1	22,210	Succinate to propionate A. sp. KLE1797	SUC	42%

NZ_FQXK01000024 (original name was: NZ_FQXK01000024.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 28.1	Pyruvate2acetate-formate	SCFA	45,095	68,234	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

NZ_FQXK01000020 (original name was: NZ_FQXK01000020.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 47.1	Putrescine2spermidine	Aliphatic_amine	17,219	40,644	Arginine degradation C. sticklandii	ARG	22%

NZ_FQXK01000006 (original name was: NZ_FQXK01000006.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 53.1	Putrescine2spermidine	Aliphatic_amine	8,200	30,464	Putrescine2spermidine E. rectale	SPRM	60%

NZ_FQXK01000012 (original name was: NZ_FQXK01000012.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 58.1	Ech_complex	E-MGC	20,595	45,522	Ech complex T. phaeum	ECH	57%

NZ_FQXK01000038 (original name was: NZ_FQXK01000038.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 77.1	acetate2butyrate	SCFA	3,987	30,345	Acetate to butyrate C. sporogenes	BUT	100%

NZ_FQXK01000013 (original name was: NZ_FQXK01000013.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 78.1	Others_HGD_unassigned	Putative	4,291	28,589

NZ_FQXK01000043 (original name was: NZ_FQXK01000043.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 79.1	Rnf_complex	E-MGC	5,139	30,317	Rnf complex C. sporogenes	RNF	83%

NZ_FQXK01000040 (original name was: NZ_FQXK01000040.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 80.1	TPP_AA_metabolism	Putative	1	15,577

No primary metabolite regions were found in these records:: NZ_FQXK01000079 (original name was: NZ_FQXK01000079.1); NZ_FQXK01000075 (original name was: NZ_FQXK01000075.1); NZ_FQXK01000081 (original name was: NZ_FQXK01000081.1); NZ_FQXK01000078 (original name was: NZ_FQXK01000078.1); NZ_FQXK01000072 (original name was: NZ_FQXK01000072.1); NZ_FQXK01000070 (original name was: NZ_FQXK01000070.1); NZ_FQXK01000067 (original name was: NZ_FQXK01000067.1); NZ_FQXK01000065 (original name was: NZ_FQXK01000065.1); NZ_FQXK01000083 (original name was: NZ_FQXK01000083.1); NZ_FQXK01000064 (original name was: NZ_FQXK01000064.1); NZ_FQXK01000063 (original name was: NZ_FQXK01000063.1); NZ_FQXK01000062 (original name was: NZ_FQXK01000062.1); NZ_FQXK01000061 (original name was: NZ_FQXK01000061.1); NZ_FQXK01000060 (original name was: NZ_FQXK01000060.1); NZ_FQXK01000059 (original name was: NZ_FQXK01000059.1); NZ_FQXK01000053 (original name was: NZ_FQXK01000053.1); NZ_FQXK01000052 (original name was: NZ_FQXK01000052.1); NZ_FQXK01000051 (original name was: NZ_FQXK01000051.1); NZ_FQXK01000054 (original name was: NZ_FQXK01000054.1); NZ_FQXK01000049 (original name was: NZ_FQXK01000049.1); NZ_FQXK01000047 (original name was: NZ_FQXK01000047.1); NZ_FQXK01000048 (original name was: NZ_FQXK01000048.1); NZ_FQXK01000021 (original name was: NZ_FQXK01000021.1); NZ_FQXK01000023 (original name was: NZ_FQXK01000023.1); NZ_FQXK01000017 (original name was: NZ_FQXK01000017.1); NZ_FQXK01000076 (original name was: NZ_FQXK01000076.1); NZ_FQXK01000055 (original name was: NZ_FQXK01000055.1); NZ_FQXK01000018 (original name was: NZ_FQXK01000018.1); NZ_FQXK01000001 (original name was: NZ_FQXK01000001.1); NZ_FQXK01000036 (original name was: NZ_FQXK01000036.1); NZ_FQXK01000016 (original name was: NZ_FQXK01000016.1); NZ_FQXK01000057 (original name was: NZ_FQXK01000057.1); NZ_FQXK01000015 (original name was: NZ_FQXK01000015.1); NZ_FQXK01000080 (original name was: NZ_FQXK01000080.1); NZ_FQXK01000014 (original name was: NZ_FQXK01000014.1); NZ_FQXK01000068 (original name was: NZ_FQXK01000068.1); NZ_FQXK01000005 (original name was: NZ_FQXK01000005.1); NZ_FQXK01000073 (original name was: NZ_FQXK01000073.1); NZ_FQXK01000042 (original name was: NZ_FQXK01000042.1); NZ_FQXK01000022 (original name was: NZ_FQXK01000022.1); NZ_FQXK01000058 (original name was: NZ_FQXK01000058.1); NZ_FQXK01000003 (original name was: NZ_FQXK01000003.1); NZ_FQXK01000030 (original name was: NZ_FQXK01000030.1); NZ_FQXK01000010 (original name was: NZ_FQXK01000010.1); NZ_FQXK01000007 (original name was: NZ_FQXK01000007.1); NZ_FQXK01000027 (original name was: NZ_FQXK01000027.1); NZ_FQXK01000011 (original name was: NZ_FQXK01000011.1); NZ_FQXK01000009 (original name was: NZ_FQXK01000009.1); NZ_FQXK01000004 (original name was: NZ_FQXK01000004.1); NZ_FQXK01000056 (original name was: NZ_FQXK01000056.1); NZ_FQXK01000008 (original name was: NZ_FQXK01000008.1); NZ_FQXK01000025 (original name was: NZ_FQXK01000025.1); NZ_FQXK01000050 (original name was: NZ_FQXK01000050.1); NZ_FQXK01000026 (original name was: NZ_FQXK01000026.1); NZ_FQXK01000028 (original name was: NZ_FQXK01000028.1); NZ_FQXK01000071 (original name was: NZ_FQXK01000071.1); NZ_FQXK01000029 (original name was: NZ_FQXK01000029.1); NZ_FQXK01000033 (original name was: NZ_FQXK01000033.1); NZ_FQXK01000034 (original name was: NZ_FQXK01000034.1); NZ_FQXK01000031 (original name was: NZ_FQXK01000031.1); NZ_FQXK01000039 (original name was: NZ_FQXK01000039.1); NZ_FQXK01000077 (original name was: NZ_FQXK01000077.1); NZ_FQXK01000041 (original name was: NZ_FQXK01000041.1); NZ_FQXK01000074 (original name was: NZ_FQXK01000074.1); NZ_FQXK01000032 (original name was: NZ_FQXK01000032.1); NZ_FQXK01000044 (original name was: NZ_FQXK01000044.1); NZ_FQXK01000035 (original name was: NZ_FQXK01000035.1); NZ_FQXK01000069 (original name was: NZ_FQXK01000069.1); NZ_FQXK01000037 (original name was: NZ_FQXK01000037.1); NZ_FQXK01000082 (original name was: NZ_FQXK01000082.1); NZ_FQXK01000066 (original name was: NZ_FQXK01000066.1); NZ_FQXK01000045 (original name was: NZ_FQXK01000045.1); NZ_FQXK01000046 (original name was: NZ_FQXK01000046.1)

Compact view

c00025_NZ_FQXK.. - Region 1 - succinate2propionate

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Location: 1 - 22,210 nt. (total: 22,210 nt) Show pHMM detection rules used

Region on contig edge.

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

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c00028_NZ_FQXK.. - Region 1 - Pyruvate2acetate-formate

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Location: 45,095 - 68,234 nt. (total: 23,140 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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c00047_NZ_FQXK.. - Region 1 - Putrescine2spermidine

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Location: 17,219 - 40,644 nt. (total: 23,426 nt) Show pHMM detection rules used

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

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c00053_NZ_FQXK.. - Region 1 - Putrescine2spermidine

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Location: 8,200 - 30,464 nt. (total: 22,265 nt) Show pHMM detection rules used

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

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c00058_NZ_FQXK.. - Region 1 - Ech_complex

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Location: 20,595 - 45,522 nt. (total: 24,928 nt) Show pHMM detection rules used

Ech_complex: (NADHdh and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and Proton_antipo_M and Proton_antipo_N and not (Oxidored_q4 or Oxidored_q3 or Molybdopterin or Molydop_binding))

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c00077_NZ_FQXK.. - Region 1 - acetate2butyrate

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Location: 3,987 - 30,345 nt. (total: 26,359 nt) Show pHMM detection rules used

acetate2butyrate: (not (POR or POR_N or PFOR_II) and minimum(4, [Acyl-CoA_dh_1, Acyl-CoA_dh_2, ECH_2, ETF, ETF_alpha, HCDH_N, Thiolase_N, ketoacyl-synt]) and HCDH and minimum(1, [EC1_2-faecali, ECH1_Enoyl_CoA_DH1, ECH1_Enoyl_CoA_DH2, ECH1_Enoyl_CoA_DH3, ECH1_Enoyl_CoA_DH4, Thiolase_C]))

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c00078_NZ_FQXK.. - Region 1 - Others_HGD_unassigned

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Location: 4,291 - 28,589 nt. (total: 24,299 nt) Show pHMM detection rules used

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

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c00079_NZ_FQXK.. - Region 1 - Rnf_complex

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Location: 5,139 - 30,317 nt. (total: 25,179 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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c00080_NZ_FQXK.. - Region 1 - TPP_AA_metabolism

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Location: 1 - 15,577 nt. (total: 15,577 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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