GCF_000439895.1_atcc_33301_v1_genomic - 9 region(s)

Identified primary metabolite regions

NZ_ATMJ01000002 (original name was: NZ_ATMJ01000002.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 2.1	NADH_dehydrogenase_I	E-MGC	90,783	125,834	NADH dehydrogenase I E. coli	NADHD	100%

NZ_ATMJ01000004 (original name was: NZ_ATMJ01000004.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 4.1	Rnf_complex	E-MGC	35,606	55,880	Rnf complex C. sporogenes	RNF	83%

NZ_ATMJ01000010 (original name was: NZ_ATMJ01000010.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 10.1	Arginine2_Hcarbonate	Other	41,846	69,923	Arginine to hydrogen carbonate P. aeruginosa	ARG	100%

NZ_ATMJ01000019 (original name was: NZ_ATMJ01000019.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 19.1	Putrescine2spermidine	Aliphatic_amine	51,878	73,574

NZ_ATMJ01000033 (original name was: NZ_ATMJ01000033.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 33.1	Pyruvate2acetate-formate	SCFA	92,716	114,879	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

NZ_ATMJ01000048 (original name was: NZ_ATMJ01000048.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 48.1	TPP_AA_metabolism	Putative	1,696	24,627

NZ_ATMJ01000050 (original name was: NZ_ATMJ01000050.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 50.1	Glycine_cleavage	Other	6,527	33,518	Glycine cleavage C. sticklandii	GLY	60%

NZ_ATMJ01000065 (original name was: NZ_ATMJ01000065.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 65.1	Nitrate_reductase	E-MGC	8,289	34,924	Nitrate reductase E. coli	NIR	80%

NZ_ATMJ01000072 (original name was: NZ_ATMJ01000072.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 72.1	Fumarate2succinate	SCFA	62,501	81,566	Fumarate2succinate suc dh E. coli	SUC	100%

No primary metabolite regions were found in these records:: NZ_ATMJ01000001 (original name was: NZ_ATMJ01000001.1); NZ_ATMJ01000003 (original name was: NZ_ATMJ01000003.1); NZ_ATMJ01000005 (original name was: NZ_ATMJ01000005.1); NZ_ATMJ01000006 (original name was: NZ_ATMJ01000006.1); NZ_ATMJ01000007 (original name was: NZ_ATMJ01000007.1); NZ_ATMJ01000008 (original name was: NZ_ATMJ01000008.1); NZ_ATMJ01000009 (original name was: NZ_ATMJ01000009.1); NZ_ATMJ01000011 (original name was: NZ_ATMJ01000011.1); NZ_ATMJ01000012 (original name was: NZ_ATMJ01000012.1); NZ_ATMJ01000013 (original name was: NZ_ATMJ01000013.1); NZ_ATMJ01000014 (original name was: NZ_ATMJ01000014.1); NZ_ATMJ01000015 (original name was: NZ_ATMJ01000015.1); NZ_ATMJ01000016 (original name was: NZ_ATMJ01000016.1); NZ_ATMJ01000017 (original name was: NZ_ATMJ01000017.1); NZ_ATMJ01000018 (original name was: NZ_ATMJ01000018.1); NZ_ATMJ01000020 (original name was: NZ_ATMJ01000020.1); NZ_ATMJ01000021 (original name was: NZ_ATMJ01000021.1); NZ_ATMJ01000022 (original name was: NZ_ATMJ01000022.1); NZ_ATMJ01000023 (original name was: NZ_ATMJ01000023.1); NZ_ATMJ01000024 (original name was: NZ_ATMJ01000024.1); NZ_ATMJ01000025 (original name was: NZ_ATMJ01000025.1); NZ_ATMJ01000026 (original name was: NZ_ATMJ01000026.1); NZ_ATMJ01000027 (original name was: NZ_ATMJ01000027.1); NZ_ATMJ01000028 (original name was: NZ_ATMJ01000028.1); NZ_ATMJ01000029 (original name was: NZ_ATMJ01000029.1); NZ_ATMJ01000030 (original name was: NZ_ATMJ01000030.1); NZ_ATMJ01000031 (original name was: NZ_ATMJ01000031.1); NZ_ATMJ01000032 (original name was: NZ_ATMJ01000032.1); NZ_ATMJ01000034 (original name was: NZ_ATMJ01000034.1); NZ_ATMJ01000035 (original name was: NZ_ATMJ01000035.1); NZ_ATMJ01000036 (original name was: NZ_ATMJ01000036.1); NZ_ATMJ01000037 (original name was: NZ_ATMJ01000037.1); NZ_ATMJ01000038 (original name was: NZ_ATMJ01000038.1); NZ_ATMJ01000039 (original name was: NZ_ATMJ01000039.1); NZ_ATMJ01000040 (original name was: NZ_ATMJ01000040.1); NZ_ATMJ01000041 (original name was: NZ_ATMJ01000041.1); NZ_ATMJ01000042 (original name was: NZ_ATMJ01000042.1); NZ_ATMJ01000043 (original name was: NZ_ATMJ01000043.1); NZ_ATMJ01000044 (original name was: NZ_ATMJ01000044.1); NZ_ATMJ01000045 (original name was: NZ_ATMJ01000045.1); NZ_ATMJ01000046 (original name was: NZ_ATMJ01000046.1); NZ_ATMJ01000047 (original name was: NZ_ATMJ01000047.1); NZ_ATMJ01000049 (original name was: NZ_ATMJ01000049.1); NZ_ATMJ01000051 (original name was: NZ_ATMJ01000051.1); NZ_ATMJ01000052 (original name was: NZ_ATMJ01000052.1); NZ_ATMJ01000053 (original name was: NZ_ATMJ01000053.1); NZ_ATMJ01000054 (original name was: NZ_ATMJ01000054.1); NZ_ATMJ01000055 (original name was: NZ_ATMJ01000055.1); NZ_ATMJ01000056 (original name was: NZ_ATMJ01000056.1); NZ_ATMJ01000057 (original name was: NZ_ATMJ01000057.1); NZ_ATMJ01000058 (original name was: NZ_ATMJ01000058.1); NZ_ATMJ01000059 (original name was: NZ_ATMJ01000059.1); NZ_ATMJ01000060 (original name was: NZ_ATMJ01000060.1); NZ_ATMJ01000061 (original name was: NZ_ATMJ01000061.1); NZ_ATMJ01000062 (original name was: NZ_ATMJ01000062.1); NZ_ATMJ01000063 (original name was: NZ_ATMJ01000063.1); NZ_ATMJ01000064 (original name was: NZ_ATMJ01000064.1); NZ_ATMJ01000066 (original name was: NZ_ATMJ01000066.1); NZ_ATMJ01000067 (original name was: NZ_ATMJ01000067.1); NZ_ATMJ01000068 (original name was: NZ_ATMJ01000068.1); NZ_ATMJ01000069 (original name was: NZ_ATMJ01000069.1); NZ_ATMJ01000070 (original name was: NZ_ATMJ01000070.1); NZ_ATMJ01000071 (original name was: NZ_ATMJ01000071.1); NZ_ATMJ01000073 (original name was: NZ_ATMJ01000073.1); NZ_ATMJ01000074 (original name was: NZ_ATMJ01000074.1); NZ_ATMJ01000075 (original name was: NZ_ATMJ01000075.1); NZ_ATMJ01000076 (original name was: NZ_ATMJ01000076.1); NZ_ATMJ01000077 (original name was: NZ_ATMJ01000077.1); NZ_ATMJ01000078 (original name was: NZ_ATMJ01000078.1); NZ_ATMJ01000079 (original name was: NZ_ATMJ01000079.1); NZ_ATMJ01000080 (original name was: NZ_ATMJ01000080.1); NZ_ATMJ01000081 (original name was: NZ_ATMJ01000081.1); NZ_ATMJ01000082 (original name was: NZ_ATMJ01000082.1); NZ_ATMJ01000083 (original name was: NZ_ATMJ01000083.1); NZ_ATMJ01000084 (original name was: NZ_ATMJ01000084.1); NZ_ATMJ01000085 (original name was: NZ_ATMJ01000085.1)

Compact view

c00002_NZ_ATMJ.. - Region 1 - NADH_dehydrogenase_I

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Location: 90,783 - 125,834 nt. (total: 35,052 nt) Show pHMM detection rules used

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

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c00004_NZ_ATMJ.. - Region 1 - Rnf_complex

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Location: 35,606 - 55,880 nt. (total: 20,275 nt) Show pHMM detection rules used

Region on contig edge.

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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c00010_NZ_ATMJ.. - Region 1 - Arginine2_Hcarbonate

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Location: 41,846 - 69,923 nt. (total: 28,078 nt) Show pHMM detection rules used

Arginine2_Hcarbonate: (Amidinotransf and OTCace and OTCace_N and AA_kinase)

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c00019_NZ_ATMJ.. - Region 1 - Putrescine2spermidine

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Location: 51,878 - 73,574 nt. (total: 21,697 nt) Show pHMM detection rules used

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

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c00033_NZ_ATMJ.. - Region 1 - Pyruvate2acetate-formate

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Location: 92,716 - 114,879 nt. (total: 22,164 nt) Show pHMM detection rules used

Region on contig edge.

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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c00048_NZ_ATMJ.. - Region 1 - TPP_AA_metabolism

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Location: 1,696 - 24,627 nt. (total: 22,932 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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c00050_NZ_ATMJ.. - Region 1 - Glycine_cleavage

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Location: 6,527 - 33,518 nt. (total: 26,992 nt) Show pHMM detection rules used

Glycine_cleavage: (minimum(2, [Aminotran_5, GCV_H, GCV_T, GDC-P, SoxG]) and GCV_H and GCV_T_C)

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c00065_NZ_ATMJ.. - Region 1 - Nitrate_reductase

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Location: 8,289 - 34,924 nt. (total: 26,636 nt) Show pHMM detection rules used

Nitrate_reductase: (Nitr_red_bet_C and Nitrate_red_del and Nitrate_red_gam and Molybdopterin and minimum(2, [Fer4_11, Molybdopterin, Molydop_binding, Nitr_red_alph_N]))

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c00072_NZ_ATMJ.. - Region 1 - Fumarate2succinate

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Location: 62,501 - 81,566 nt. (total: 19,066 nt) Show pHMM detection rules used

Region on contig edge.

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

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