GCF_019042115.1_ASM1904211v1_genomic - 3 region(s)

Identified primary metabolite regions

c00009_NZ_JAHP.. (original name was: NZ_JAHPZN010000001.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 9.1	Pyruvate2acetate-formate	SCFA	270,258	293,629	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

c00015_NZ_JAHP.. (original name was: NZ_JAHPZN010000004.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 15.1	Fumarate2succinate	SCFA	149,787	172,620

c00018_NZ_JAHP.. (original name was: NZ_JAHPZN010000007.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 18.1	Others_HGD_unassigned	Putative	37,215	61,906

No primary metabolite regions were found in these records:: c00001_NZ_JAHP.. (original name was: NZ_JAHPZN010000010.1); c00002_NZ_JAHP.. (original name was: NZ_JAHPZN010000011.1); c00003_NZ_JAHP.. (original name was: NZ_JAHPZN010000012.1); c00004_NZ_JAHP.. (original name was: NZ_JAHPZN010000013.1); c00005_NZ_JAHP.. (original name was: NZ_JAHPZN010000014.1); c00006_NZ_JAHP.. (original name was: NZ_JAHPZN010000015.1); c00007_NZ_JAHP.. (original name was: NZ_JAHPZN010000016.1); c00008_NZ_JAHP.. (original name was: NZ_JAHPZN010000017.1); c00010_NZ_JAHP.. (original name was: NZ_JAHPZN010000018.1); c00011_NZ_JAHP.. (original name was: NZ_JAHPZN010000019.1); c00012_NZ_JAHP.. (original name was: NZ_JAHPZN010000020.1); c00013_NZ_JAHP.. (original name was: NZ_JAHPZN010000002.1); c00014_NZ_JAHP.. (original name was: NZ_JAHPZN010000003.1); c00016_NZ_JAHP.. (original name was: NZ_JAHPZN010000005.1); c00017_NZ_JAHP.. (original name was: NZ_JAHPZN010000006.1); c00019_NZ_JAHP.. (original name was: NZ_JAHPZN010000008.1); c00020_NZ_JAHP.. (original name was: NZ_JAHPZN010000009.1)

Compact view

c00009_NZ_JAHP.. - Region 1 - Pyruvate2acetate-formate

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Location: 270,258 - 293,629 nt. (total: 23,372 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00015_NZ_JAHP.. - Region 1 - Fumarate2succinate

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Location: 149,787 - 172,620 nt. (total: 22,834 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00018_NZ_JAHP.. - Region 1 - Others_HGD_unassigned

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Location: 37,215 - 61,906 nt. (total: 24,692 nt) Show pHMM detection rules used

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.