GCF_000426565.1_ASM42656v1_genomic - 8 region(s)

Identified primary metabolite regions

NZ_AUFP01000001 (original name was: NZ_AUFP01000001.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 1.1	fatty_acids-unassigned	Putative	68,778	96,336
Region 1.2	Fumarate2succinate	SCFA	304,309	327,752	Fumarate to succinate B. thetaiotaomicron	SUC	100%

NZ_AUFP01000002 (original name was: NZ_AUFP01000002.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 2.1	TPP_AA_metabolism	Putative	272,430	306,768	NADH dehydrogenase I Bacteroides sp.	NADHD	14%

NZ_KE384540.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 3.1	NADH_dehydrogenase_I	E-MGC	89,569	119,776	NADH dehydrogenase I Bacteroides sp.	NADHD	47%

NZ_AUFP01000006 (original name was: NZ_AUFP01000006.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 5.1	Rnf_complex	E-MGC	49,291	74,378	Rnf complex C. sporogenes	RNF	83%
Region 5.2	Pyruvate2acetate-formate	SCFA	102,704	125,789	Pyruvate to acetate-formate E. coli	PFL_acetate	100%
Region 5.3	PFOR_II_pathway	SCFA	199,579	223,178	PFOR II pathway B. thetaiotaomicron	PFORII	100%

NZ_AUFP01000009 (original name was: NZ_AUFP01000009.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 8.1	TPP_AA_metabolism	Putative	107,427	131,676

Region	Type	Class	From	To	Most similar known cluster	Similarity
Region 1.1	fatty_acids-unassigned	Putative	68,778	96,336
Region 1.2	Fumarate2succinate	SCFA	304,309	327,752	Fumarate to succinate B. thetaiotaomicron	SUC	100%
Region 2.1	TPP_AA_metabolism	Putative	272,430	306,768	NADH dehydrogenase I Bacteroides sp.	NADHD	14%
Region 3.1	NADH_dehydrogenase_I	E-MGC	89,569	119,776	NADH dehydrogenase I Bacteroides sp.	NADHD	47%
Region 5.1	Rnf_complex	E-MGC	49,291	74,378	Rnf complex C. sporogenes	RNF	83%
Region 5.2	Pyruvate2acetate-formate	SCFA	102,704	125,789	Pyruvate to acetate-formate E. coli	PFL_acetate	100%
Region 5.3	PFOR_II_pathway	SCFA	199,579	223,178	PFOR II pathway B. thetaiotaomicron	PFORII	100%
Region 8.1	TPP_AA_metabolism	Putative	107,427	131,676

No primary metabolite regions were found in these records:: NZ_AUFP01000005 (original name was: NZ_AUFP01000005.1); NZ_AUFP01000007 (original name was: NZ_AUFP01000007.1); NZ_AUFP01000008 (original name was: NZ_AUFP01000008.1); NZ_AUFP01000010 (original name was: NZ_AUFP01000010.1); NZ_AUFP01000011 (original name was: NZ_AUFP01000011.1); NZ_AUFP01000012 (original name was: NZ_AUFP01000012.1); NZ_AUFP01000013 (original name was: NZ_AUFP01000013.1); NZ_AUFP01000014 (original name was: NZ_AUFP01000014.1); NZ_KE384541.1; NZ_AUFP01000017 (original name was: NZ_AUFP01000017.1); NZ_AUFP01000018 (original name was: NZ_AUFP01000018.1); NZ_KE384542.1; NZ_AUFP01000021 (original name was: NZ_AUFP01000021.1); NZ_AUFP01000022 (original name was: NZ_AUFP01000022.1); NZ_AUFP01000023 (original name was: NZ_AUFP01000023.1); NZ_AUFP01000024 (original name was: NZ_AUFP01000024.1); NZ_AUFP01000025 (original name was: NZ_AUFP01000025.1); NZ_AUFP01000026 (original name was: NZ_AUFP01000026.1); NZ_AUFP01000027 (original name was: NZ_AUFP01000027.1); NZ_KE384543.1; NZ_AUFP01000030 (original name was: NZ_AUFP01000030.1); NZ_AUFP01000031 (original name was: NZ_AUFP01000031.1); NZ_AUFP01000032 (original name was: NZ_AUFP01000032.1); NZ_AUFP01000033 (original name was: NZ_AUFP01000033.1); NZ_AUFP01000034 (original name was: NZ_AUFP01000034.1); NZ_AUFP01000035 (original name was: NZ_AUFP01000035.1); NZ_AUFP01000036 (original name was: NZ_AUFP01000036.1); NZ_AUFP01000037 (original name was: NZ_AUFP01000037.1); NZ_AUFP01000038 (original name was: NZ_AUFP01000038.1); NZ_AUFP01000039 (original name was: NZ_AUFP01000039.1); NZ_AUFP01000040 (original name was: NZ_AUFP01000040.1); NZ_AUFP01000041 (original name was: NZ_AUFP01000041.1); NZ_AUFP01000042 (original name was: NZ_AUFP01000042.1); NZ_AUFP01000043 (original name was: NZ_AUFP01000043.1); NZ_AUFP01000044 (original name was: NZ_AUFP01000044.1); NZ_AUFP01000045 (original name was: NZ_AUFP01000045.1); NZ_AUFP01000046 (original name was: NZ_AUFP01000046.1); NZ_AUFP01000047 (original name was: NZ_AUFP01000047.1); NZ_AUFP01000048 (original name was: NZ_AUFP01000048.1)

Compact view

c00001_NZ_AUFP.. - Region 1 - fatty_acids-unassigned

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Location: 68,778 - 96,336 nt. (total: 27,559 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

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c00001_NZ_AUFP.. - Region 2 - Fumarate2succinate

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Location: 304,309 - 327,752 nt. (total: 23,444 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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c00002_NZ_AUFP.. - Region 1 - TPP_AA_metabolism

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Location: 272,430 - 306,768 nt. (total: 34,339 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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NZ_KE384540.1 - Region 1 - NADH_dehydrogenase_I

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Location: 89,569 - 119,776 nt. (total: 30,208 nt) Show pHMM detection rules used

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

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c00005_NZ_AUFP.. - Region 1 - Rnf_complex

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Location: 49,291 - 74,378 nt. (total: 25,088 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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c00005_NZ_AUFP.. - Region 2 - Pyruvate2acetate-formate

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Location: 102,704 - 125,789 nt. (total: 23,086 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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c00005_NZ_AUFP.. - Region 3 - PFOR_II_pathway

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Location: 199,579 - 223,178 nt. (total: 23,600 nt) Show pHMM detection rules used

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

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c00008_NZ_AUFP.. - Region 1 - TPP_AA_metabolism

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Location: 107,427 - 131,676 nt. (total: 24,250 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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