GCF_001623405.1_ASM162340v1_genomic - 5 region(s)

Identified primary metabolite regions

NZ_LUHG01000097 (original name was: NZ_LUHG01000097.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 8.1	NADH_dehydrogenase_I	E-MGC	87,937	117,929	NADH dehydrogenase I Bacteroides sp.	NADHD	47%

NZ_LUHG01000100 (original name was: NZ_LUHG01000100.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 25.1	Fumarate2succinate	SCFA	102,215	125,776	Fumarate to succinate B. thetaiotaomicron	SUC	66%
Region 25.2	TPP_AA_metabolism	Putative	131,782	162,911

NZ_LUHG01000046 (original name was: NZ_LUHG01000046.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 62.1	fatty_acids-unassigned	Putative	4,896	20,157

NZ_LUHG01000044 (original name was: NZ_LUHG01000044.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 92.1	Arginine2putrescine	Aliphatic_amine	21,684	49,626

No primary metabolite regions were found in these records:: NZ_LUHG01000056 (original name was: NZ_LUHG01000056.1); NZ_LUHG01000067 (original name was: NZ_LUHG01000067.1); NZ_LUHG01000059 (original name was: NZ_LUHG01000059.1); NZ_LUHG01000022 (original name was: NZ_LUHG01000022.1); NZ_LUHG01000019 (original name was: NZ_LUHG01000019.1); NZ_LUHG01000089 (original name was: NZ_LUHG01000089.1); NZ_LUHG01000039 (original name was: NZ_LUHG01000039.1); NZ_LUHG01000093 (original name was: NZ_LUHG01000093.1); NZ_LUHG01000047 (original name was: NZ_LUHG01000047.1); NZ_LUHG01000003 (original name was: NZ_LUHG01000003.1); NZ_LUHG01000113 (original name was: NZ_LUHG01000113.1); NZ_LUHG01000107 (original name was: NZ_LUHG01000107.1); NZ_LUHG01000013 (original name was: NZ_LUHG01000013.1); NZ_LUHG01000115 (original name was: NZ_LUHG01000115.1); NZ_LUHG01000116 (original name was: NZ_LUHG01000116.1); NZ_LUHG01000066 (original name was: NZ_LUHG01000066.1); NZ_LUHG01000002 (original name was: NZ_LUHG01000002.1); NZ_LUHG01000070 (original name was: NZ_LUHG01000070.1); NZ_LUHG01000049 (original name was: NZ_LUHG01000049.1); NZ_LUHG01000051 (original name was: NZ_LUHG01000051.1); NZ_LUHG01000096 (original name was: NZ_LUHG01000096.1); NZ_LUHG01000084 (original name was: NZ_LUHG01000084.1); NZ_LUHG01000078 (original name was: NZ_LUHG01000078.1); NZ_LUHG01000018 (original name was: NZ_LUHG01000018.1); NZ_LUHG01000102 (original name was: NZ_LUHG01000102.1); NZ_LUHG01000099 (original name was: NZ_LUHG01000099.1); NZ_LUHG01000029 (original name was: NZ_LUHG01000029.1); NZ_LUHG01000001 (original name was: NZ_LUHG01000001.1); NZ_LUHG01000052 (original name was: NZ_LUHG01000052.1); NZ_LUHG01000075 (original name was: NZ_LUHG01000075.1); NZ_LUHG01000094 (original name was: NZ_LUHG01000094.1); NZ_LUHG01000026 (original name was: NZ_LUHG01000026.1); NZ_LUHG01000109 (original name was: NZ_LUHG01000109.1); NZ_LUHG01000036 (original name was: NZ_LUHG01000036.1); NZ_LUHG01000112 (original name was: NZ_LUHG01000112.1); NZ_LUHG01000076 (original name was: NZ_LUHG01000076.1); NZ_LUHG01000110 (original name was: NZ_LUHG01000110.1); NZ_LUHG01000072 (original name was: NZ_LUHG01000072.1); NZ_LUHG01000081 (original name was: NZ_LUHG01000081.1); NZ_LUHG01000082 (original name was: NZ_LUHG01000082.1); NZ_LUHG01000037 (original name was: NZ_LUHG01000037.1); NZ_LUHG01000014 (original name was: NZ_LUHG01000014.1); NZ_LUHG01000086 (original name was: NZ_LUHG01000086.1); NZ_LUHG01000098 (original name was: NZ_LUHG01000098.1); NZ_LUHG01000057 (original name was: NZ_LUHG01000057.1); NZ_LUHG01000088 (original name was: NZ_LUHG01000088.1); NZ_LUHG01000105 (original name was: NZ_LUHG01000105.1); NZ_LUHG01000058 (original name was: NZ_LUHG01000058.1); NZ_LUHG01000101 (original name was: NZ_LUHG01000101.1); NZ_LUHG01000038 (original name was: NZ_LUHG01000038.1); NZ_LUHG01000077 (original name was: NZ_LUHG01000077.1); NZ_LUHG01000024 (original name was: NZ_LUHG01000024.1); NZ_LUHG01000087 (original name was: NZ_LUHG01000087.1); NZ_LUHG01000017 (original name was: NZ_LUHG01000017.1); NZ_LUHG01000016 (original name was: NZ_LUHG01000016.1); NZ_LUHG01000092 (original name was: NZ_LUHG01000092.1); NZ_LUHG01000040 (original name was: NZ_LUHG01000040.1); NZ_LUHG01000055 (original name was: NZ_LUHG01000055.1); NZ_LUHG01000106 (original name was: NZ_LUHG01000106.1); NZ_LUHG01000073 (original name was: NZ_LUHG01000073.1); NZ_LUHG01000054 (original name was: NZ_LUHG01000054.1); NZ_LUHG01000045 (original name was: NZ_LUHG01000045.1); NZ_LUHG01000083 (original name was: NZ_LUHG01000083.1); NZ_LUHG01000032 (original name was: NZ_LUHG01000032.1); NZ_LUHG01000028 (original name was: NZ_LUHG01000028.1); NZ_LUHG01000091 (original name was: NZ_LUHG01000091.1); NZ_LUHG01000065 (original name was: NZ_LUHG01000065.1); NZ_LUHG01000069 (original name was: NZ_LUHG01000069.1); NZ_LUHG01000074 (original name was: NZ_LUHG01000074.1); NZ_LUHG01000071 (original name was: NZ_LUHG01000071.1); NZ_LUHG01000062 (original name was: NZ_LUHG01000062.1); NZ_LUHG01000030 (original name was: NZ_LUHG01000030.1); NZ_LUHG01000108 (original name was: NZ_LUHG01000108.1); NZ_LUHG01000006 (original name was: NZ_LUHG01000006.1); NZ_LUHG01000023 (original name was: NZ_LUHG01000023.1); NZ_LUHG01000095 (original name was: NZ_LUHG01000095.1); NZ_LUHG01000064 (original name was: NZ_LUHG01000064.1); NZ_LUHG01000035 (original name was: NZ_LUHG01000035.1); NZ_LUHG01000090 (original name was: NZ_LUHG01000090.1); NZ_LUHG01000053 (original name was: NZ_LUHG01000053.1); NZ_LUHG01000103 (original name was: NZ_LUHG01000103.1); NZ_LUHG01000034 (original name was: NZ_LUHG01000034.1); NZ_LUHG01000104 (original name was: NZ_LUHG01000104.1); NZ_LUHG01000020 (original name was: NZ_LUHG01000020.1); NZ_LUHG01000041 (original name was: NZ_LUHG01000041.1); NZ_LUHG01000080 (original name was: NZ_LUHG01000080.1); NZ_LUHG01000050 (original name was: NZ_LUHG01000050.1); NZ_LUHG01000042 (original name was: NZ_LUHG01000042.1); NZ_LUHG01000061 (original name was: NZ_LUHG01000061.1); NZ_LUHG01000033 (original name was: NZ_LUHG01000033.1); NZ_LUHG01000111 (original name was: NZ_LUHG01000111.1); NZ_LUHG01000085 (original name was: NZ_LUHG01000085.1); NZ_LUHG01000012 (original name was: NZ_LUHG01000012.1); NZ_LUHG01000068 (original name was: NZ_LUHG01000068.1)

Compact view

c00008_NZ_LUHG.. - Region 1 - NADH_dehydrogenase_I

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Location: 87,937 - 117,929 nt. (total: 29,993 nt) Show pHMM detection rules used

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

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core biosynthetic genes

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transport-related genes

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c00025_NZ_LUHG.. - Region 1 - Fumarate2succinate

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Location: 102,215 - 125,776 nt. (total: 23,562 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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c00025_NZ_LUHG.. - Region 2 - TPP_AA_metabolism

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Location: 131,782 - 162,911 nt. (total: 31,130 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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No matches found.

c00062_NZ_LUHG.. - Region 1 - fatty_acids-unassigned

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Location: 4,896 - 20,157 nt. (total: 15,262 nt) Show pHMM detection rules used

Region on contig edge.

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

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regulatory genes

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KnownClusterBlast

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c00092_NZ_LUHG.. - Region 1 - Arginine2putrescine

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Location: 21,684 - 49,626 nt. (total: 27,943 nt) Show pHMM detection rules used

Arginine2putrescine: (minimum(3, [AdoMet_dc, Amidinotransf, Arginase, OKR_DC_1, OKR_DC_1_7_arginine, OTCace]) or ((OKR_DC_1_5_ornithine or OKR_DC_1 or Orn_Arg_deC_N) and minimum(1, [Arginase, OTCace, OTCace_N, PAD_porph])))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

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