GCF_003846135.1_ASM384613v1_genomic - 9 region(s)

Identified primary metabolite regions

NZ_RHHM01000001 (original name was: NZ_RHHM01000001.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 1.1	NADH_dehydrogenase_I	E-MGC	240,070	275,249	NADH dehydrogenase I E. coli	NADHD	100%

NZ_RHHM01000011 (original name was: NZ_RHHM01000011.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 3.1	Fumarate2succinate	SCFA	28,143	50,644	Fumarate2succinate suc dh E. coli	SUC	100%

NZ_RHHM01000012 (original name was: NZ_RHHM01000012.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 4.1	Arginine2_Hcarbonate	Other	104,070	134,996	Arginine to hydrogen carbonate P. aeruginosa	ARG	100%

NZ_RHHM01000015 (original name was: NZ_RHHM01000015.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 7.1	Glycine_cleavage	Other	13,976	46,031	Glycine cleavage C. sticklandii	GLY	80%
Region 7.2	Arginine2putrescine	Aliphatic_amine	50,604	73,679	Arginine2putrescine E. coli	PUTR	50%

NZ_RHHM01000017 (original name was: NZ_RHHM01000017.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 9.1	TPP_AA_metabolism	Putative	1	23,010

NZ_RHHM01000006 (original name was: NZ_RHHM01000006.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 39.1	Putrescine2spermidine	Aliphatic_amine	72,321	94,015

NZ_RHHM01000007 (original name was: NZ_RHHM01000007.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 40.1	Pyruvate2acetate-formate	SCFA	95,086	118,276	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

NZ_RHHM01000008 (original name was: NZ_RHHM01000008.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 41.1	Fumarate2succinate	SCFA	78,777	101,288	Fumarate2succinate fum red E. coli	SUC	100%

No primary metabolite regions were found in these records:: NZ_RHHM01000010 (original name was: NZ_RHHM01000010.1); NZ_RHHM01000013 (original name was: NZ_RHHM01000013.1); NZ_RHHM01000014 (original name was: NZ_RHHM01000014.1); NZ_RHHM01000016 (original name was: NZ_RHHM01000016.1); NZ_RHHM01000018 (original name was: NZ_RHHM01000018.1); NZ_RHHM01000019 (original name was: NZ_RHHM01000019.1); NZ_RHHM01000002 (original name was: NZ_RHHM01000002.1); NZ_RHHM01000020 (original name was: NZ_RHHM01000020.1); NZ_RHHM01000021 (original name was: NZ_RHHM01000021.1); NZ_RHHM01000022 (original name was: NZ_RHHM01000022.1); NZ_RHHM01000023 (original name was: NZ_RHHM01000023.1); NZ_RHHM01000024 (original name was: NZ_RHHM01000024.1); NZ_RHHM01000025 (original name was: NZ_RHHM01000025.1); NZ_RHHM01000026 (original name was: NZ_RHHM01000026.1); NZ_RHHM01000027 (original name was: NZ_RHHM01000027.1); NZ_RHHM01000028 (original name was: NZ_RHHM01000028.1); NZ_RHHM01000029 (original name was: NZ_RHHM01000029.1); NZ_RHHM01000003 (original name was: NZ_RHHM01000003.1); NZ_RHHM01000030 (original name was: NZ_RHHM01000030.1); NZ_RHHM01000031 (original name was: NZ_RHHM01000031.1); NZ_RHHM01000032 (original name was: NZ_RHHM01000032.1); NZ_RHHM01000033 (original name was: NZ_RHHM01000033.1); NZ_RHHM01000034 (original name was: NZ_RHHM01000034.1); NZ_RHHM01000035 (original name was: NZ_RHHM01000035.1); NZ_RHHM01000036 (original name was: NZ_RHHM01000036.1); NZ_RHHM01000037 (original name was: NZ_RHHM01000037.1); NZ_RHHM01000038 (original name was: NZ_RHHM01000038.1); NZ_RHHM01000004 (original name was: NZ_RHHM01000004.1); NZ_RHHM01000039 (original name was: NZ_RHHM01000039.1); NZ_RHHM01000040 (original name was: NZ_RHHM01000040.1); NZ_RHHM01000041 (original name was: NZ_RHHM01000041.1); NZ_RHHM01000042 (original name was: NZ_RHHM01000042.1); NZ_RHHM01000005 (original name was: NZ_RHHM01000005.1); NZ_RHHM01000009 (original name was: NZ_RHHM01000009.1)

Compact view

c00001_NZ_RHHM.. - Region 1 - NADH_dehydrogenase_I

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Location: 240,070 - 275,249 nt. (total: 35,180 nt) Show pHMM detection rules used

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

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c00003_NZ_RHHM.. - Region 1 - Fumarate2succinate

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Location: 28,143 - 50,644 nt. (total: 22,502 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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c00004_NZ_RHHM.. - Region 1 - Arginine2_Hcarbonate

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Location: 104,070 - 134,996 nt. (total: 30,927 nt) Show pHMM detection rules used

Arginine2_Hcarbonate: (Amidinotransf and OTCace and OTCace_N and AA_kinase)

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c00007_NZ_RHHM.. - Region 1 - Glycine_cleavage

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Location: 13,976 - 46,031 nt. (total: 32,056 nt) Show pHMM detection rules used

Glycine_cleavage: (minimum(2, [Aminotran_5, GCV_H, GCV_T, GDC-P, SoxG]) and GCV_H and GCV_T_C)

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c00007_NZ_RHHM.. - Region 2 - Arginine2putrescine

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Location: 50,604 - 73,679 nt. (total: 23,076 nt) Show pHMM detection rules used

Arginine2putrescine: (minimum(3, [AdoMet_dc, Amidinotransf, Arginase, OKR_DC_1, OKR_DC_1_7_arginine, OTCace]) or ((OKR_DC_1_5_ornithine or OKR_DC_1 or Orn_Arg_deC_N) and minimum(1, [Arginase, OTCace, OTCace_N, PAD_porph])))

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c00009_NZ_RHHM.. - Region 1 - TPP_AA_metabolism

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Location: 1 - 23,010 nt. (total: 23,010 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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c00039_NZ_RHHM.. - Region 1 - Putrescine2spermidine

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Location: 72,321 - 94,015 nt. (total: 21,695 nt) Show pHMM detection rules used

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

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c00040_NZ_RHHM.. - Region 1 - Pyruvate2acetate-formate

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Location: 95,086 - 118,276 nt. (total: 23,191 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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c00041_NZ_RHHM.. - Region 1 - Fumarate2succinate

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Location: 78,777 - 101,288 nt. (total: 22,512 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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