GCF_003317055.1_ASM331705v1_genomic - 5 region(s)

Identified primary metabolite regions

NZ_QNRX01000001 (original name was: NZ_QNRX01000001.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 1.1	Rnf_complex	E-MGC	120,904	145,795	Rnf complex C. sporogenes	RNF	100%

NZ_QNRX01000002 (original name was: NZ_QNRX01000002.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 2.1	Acetyl-CoA_pathway	SCFA	70,320	112,226	Acetyl-CoA pathway B. hydrogenotrophica	Acetate	57%

NZ_QNRX01000007 (original name was: NZ_QNRX01000007.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 7.1	Others_HGD_unassigned	Putative	114,085	138,419

NZ_QNRX01000008 (original name was: NZ_QNRX01000008.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 8.1	PFOR_II_pathway	SCFA	50,204	73,716	PFOR II pathway B. thetaiotaomicron	PFORII	100%

NZ_QNRX01000014 (original name was: NZ_QNRX01000014.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 14.1	Putrescine2spermidine,Arginine2putrescine,OD_AA_metabolism,PFOR_II_pathway	SCFA	1	25,870	Arginine2putrescine R. gnavus	PUTR	100%

No primary metabolite regions were found in these records:: NZ_QNRX01000003 (original name was: NZ_QNRX01000003.1); NZ_QNRX01000004 (original name was: NZ_QNRX01000004.1); NZ_QNRX01000005 (original name was: NZ_QNRX01000005.1); NZ_QNRX01000006 (original name was: NZ_QNRX01000006.1); NZ_QNRX01000009 (original name was: NZ_QNRX01000009.1); NZ_QNRX01000010 (original name was: NZ_QNRX01000010.1); NZ_QNRX01000011 (original name was: NZ_QNRX01000011.1); NZ_QNRX01000012 (original name was: NZ_QNRX01000012.1); NZ_QNRX01000013 (original name was: NZ_QNRX01000013.1); NZ_QNRX01000015 (original name was: NZ_QNRX01000015.1); NZ_QNRX01000016 (original name was: NZ_QNRX01000016.1); NZ_QNRX01000017 (original name was: NZ_QNRX01000017.1); NZ_QNRX01000018 (original name was: NZ_QNRX01000018.1); NZ_QNRX01000019 (original name was: NZ_QNRX01000019.1); NZ_QNRX01000020 (original name was: NZ_QNRX01000020.1); NZ_QNRX01000021 (original name was: NZ_QNRX01000021.1); NZ_QNRX01000022 (original name was: NZ_QNRX01000022.1); NZ_QNRX01000023 (original name was: NZ_QNRX01000023.1); NZ_QNRX01000024 (original name was: NZ_QNRX01000024.1); NZ_QNRX01000025 (original name was: NZ_QNRX01000025.1); NZ_QNRX01000026 (original name was: NZ_QNRX01000026.1); NZ_QNRX01000027 (original name was: NZ_QNRX01000027.1); NZ_QNRX01000028 (original name was: NZ_QNRX01000028.1); NZ_QNRX01000029 (original name was: NZ_QNRX01000029.1); NZ_QNRX01000030 (original name was: NZ_QNRX01000030.1); NZ_QNRX01000031 (original name was: NZ_QNRX01000031.1); NZ_QNRX01000032 (original name was: NZ_QNRX01000032.1); NZ_QNRX01000033 (original name was: NZ_QNRX01000033.1); NZ_QNRX01000034 (original name was: NZ_QNRX01000034.1); NZ_QNRX01000035 (original name was: NZ_QNRX01000035.1); NZ_QNRX01000036 (original name was: NZ_QNRX01000036.1); NZ_QNRX01000037 (original name was: NZ_QNRX01000037.1); NZ_QNRX01000038 (original name was: NZ_QNRX01000038.1); NZ_QNRX01000039 (original name was: NZ_QNRX01000039.1); NZ_QNRX01000040 (original name was: NZ_QNRX01000040.1); NZ_QNRX01000041 (original name was: NZ_QNRX01000041.1); NZ_QNRX01000042 (original name was: NZ_QNRX01000042.1); NZ_QNRX01000043 (original name was: NZ_QNRX01000043.1); NZ_QNRX01000044 (original name was: NZ_QNRX01000044.1); NZ_QNRX01000045 (original name was: NZ_QNRX01000045.1); NZ_QNRX01000046 (original name was: NZ_QNRX01000046.1)

Compact view

c00001_NZ_QNRX.. - Region 1 - Rnf_complex

Download region GenBank file

Location: 120,904 - 145,795 nt. (total: 24,892 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00002_NZ_QNRX.. - Region 1 - Acetyl-CoA_pathway

Download region GenBank file

Location: 70,320 - 112,226 nt. (total: 41,907 nt) Show pHMM detection rules used

Acetyl-CoA_pathway: (CdhC and CdhD and minimum(8, [CbiA, FTCD_C, FTHFS, FeS, Fer2, GCV_H, MTHFR, MTHFR_C, Prismane, Pterin_bind, Pyr_redox_2, Pyr_redox_dim, RACo_C_ter, THF_DHG_CYH, THF_DHG_CYH_C]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00007_NZ_QNRX.. - Region 1 - Others_HGD_unassigned

Download region GenBank file

Location: 114,085 - 138,419 nt. (total: 24,335 nt) Show pHMM detection rules used

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

c00008_NZ_QNRX.. - Region 1 - PFOR_II_pathway

Download region GenBank file

Location: 50,204 - 73,716 nt. (total: 23,513 nt) Show pHMM detection rules used

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00014_NZ_QNRX.. - Region 1 - Arginine2putrescine,OD_AA_metabolism,PFOR_II_pathway,Putrescine2spermidine

Download region GenBank file

Location: 1 - 25,870 nt. (total: 25,870 nt) Show pHMM detection rules used

Region on contig edge.

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))
Arginine2putrescine: (minimum(3, [AdoMet_dc, Amidinotransf, Arginase, OKR_DC_1, OKR_DC_1_7_arginine, OTCace]) or ((OKR_DC_1_5_ornithine or OKR_DC_1 or Orn_Arg_deC_N) and minimum(1, [Arginase, OTCace, OTCace_N, PAD_porph])))
OD_AA_metabolism: (minimum(1, [PFOR_II, POR, POR_N]) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (Gly_radical_scatole or Gly_radical or Gly_430_pcre or Gly_8-9_TMA))
PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters