GCF_000195635.1_ASM19563v1_genomic - 8 region(s)

Identified primary metabolite regions

NZ_GL882602.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 1.1	succinate2propionate	SCFA	4,839	19,941	Succinate to propionate B. theta	PRO	75%

NZ_GL882605.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 4.1	PFOR_II_pathway	SCFA	28,432	51,989	PFOR II pathway B. thetaiotaomicron	PFORII	100%

NZ_GL882614.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 13.1	porA	SCFA	3,368	26,303	porA C. sporogenes	POR	60%

NZ_GL882619.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 18.1	Pyruvate2acetate-formate	SCFA	10,429	33,394	Pyruvate to acetate-formate B. thetaiotaomicron	PFL_acetate	100%

NZ_GL882620.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 19.1	Rnf_complex	E-MGC	1	16,614	Rnf complex C. sporogenes	RNF	66%

NZ_GL882621.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 20.1	TPP_AA_metabolism	Putative	39,406	65,438

NZ_GL882633.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 31.1	NADH_dehydrogenase_I	E-MGC	116,885	147,163	NADH dehydrogenase I Bacteroides sp.	NADHD	80%

NZ_GL882637.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 35.1	Fumarate2succinate	SCFA	40,284	63,807	Fumarate to succinate B. thetaiotaomicron	SUC	100%

No primary metabolite regions were found in these records:: NZ_GL882603.1; NZ_GL882604.1; NZ_GL882606.1; NZ_GL882607.1; NZ_GL882608.1; NZ_GL882609.1; NZ_GL882610.1; NZ_GL882611.1; NZ_GL882612.1; NZ_GL882613.1; NZ_GL882615.1; NZ_GL882616.1; NZ_GL882617.1; NZ_GL882618.1; NZ_GL882622.1; NZ_GL882623.1; NZ_GL882624.1; NZ_GL882625.1; NZ_GL882626.1; NZ_GL882627.1; NZ_GL882629.1; NZ_GL882630.1; NZ_GL882631.1; NZ_GL882632.1; NZ_GL882634.1; NZ_GL882635.1; NZ_GL882636.1; NZ_GL882638.1; NZ_GL882639.1; NZ_GL882640.1; NZ_GL882641.1; NZ_GL882642.1; NZ_GL882643.1; NZ_GL882644.1; NZ_GL882646.1; NZ_GL882647.1; NZ_GL882648.1; NZ_GL882649.1; NZ_GL882650.1; NZ_GL882651.1; NZ_GL882654.1; NZ_GL882656.1; NZ_GL882657.1; NZ_GL882659.1; NZ_GL882660.1; NZ_GL882661.1; NZ_GL882662.1; NZ_GL882664.1; NZ_GL882665.1; NZ_GL882666.1; NZ_GL882667.1; NZ_GL882668.1; NZ_GL882671.1; NZ_GL882673.1; NZ_GL882674.1; NZ_GL882675.1; NZ_GL882676.1; NZ_GL882677.1; NZ_GL882678.1; NZ_GL882680.1; NZ_GL882682.1; NZ_GL882683.1; NZ_GL882684.1; NZ_GL882685.1; NZ_GL882686.1; NZ_GL882687.1; NZ_GL882688.1; NZ_GL882689.1; NZ_GL882690.1; NZ_GL882691.1; NZ_GL882692.1; NZ_GL882693.1; NZ_GL882694.1; NZ_GL882695.1; NZ_GL882697.1

Compact view

NZ_GL882602.1 - Region 1 - succinate2propionate

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Location: 4,839 - 19,941 nt. (total: 15,103 nt) Show pHMM detection rules used

Region on contig edge.

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

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NZ_GL882605.1 - Region 1 - PFOR_II_pathway

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Location: 28,432 - 51,989 nt. (total: 23,558 nt) Show pHMM detection rules used

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

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NZ_GL882614.1 - Region 1 - porA

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Location: 3,368 - 26,303 nt. (total: 22,936 nt) Show pHMM detection rules used

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

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NZ_GL882619.1 - Region 1 - Pyruvate2acetate-formate

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Location: 10,429 - 33,394 nt. (total: 22,966 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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NZ_GL882620.1 - Region 1 - Rnf_complex

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Location: 1 - 16,614 nt. (total: 16,614 nt) Show pHMM detection rules used

Region on contig edge.

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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NZ_GL882621.1 - Region 1 - TPP_AA_metabolism

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Location: 39,406 - 65,438 nt. (total: 26,033 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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No matches found.

NZ_GL882633.1 - Region 1 - NADH_dehydrogenase_I

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Location: 116,885 - 147,163 nt. (total: 30,279 nt) Show pHMM detection rules used

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

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NZ_GL882637.1 - Region 1 - Fumarate2succinate

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Location: 40,284 - 63,807 nt. (total: 23,524 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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