GCF_002290485.1_ASM229048v1_genomic - 22 region(s)

Identified primary metabolite regions

NZ_NIYS01000082 (original name was: NZ_NIYS01000082.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 11.1	EUT_pathway	SCFA-other	41,727	88,800	Ethanolamine degradation S. typhimurium	EUT	94%

NZ_NIYS01000040 (original name was: NZ_NIYS01000040.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 33.1	Others_HGD_unassigned	Putative	68,202	90,130

NZ_NIYS01000100 (original name was: NZ_NIYS01000100.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 47.1	TPP_AA_metabolism	Putative	1	22,652

NZ_NIYS01000019 (original name was: NZ_NIYS01000019.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 48.1	Fumarate2succinate	SCFA	1	19,163	Fumarate2succinate fum red E. coli	SUC	100%

NZ_NIYS01000023 (original name was: NZ_NIYS01000023.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 49.1	fatty_acids-unassigned	Putative	42,289	65,743

NZ_NIYS01000059 (original name was: NZ_NIYS01000059.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 52.1	Nitrate_reductase	E-MGC	45,790	72,452	Nitrate reductase E. coli	NIR	80%
Region 52.2	OD_eut_pdu_related,OD_lactate_related,OD_aldehydes_related,PFOR_II_pathway	SCFA	176,580	212,962	Acetate to butyrate C. sporogenes	BUT	50%

NZ_NIYS01000109 (original name was: NZ_NIYS01000109.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 53.1	Threonine2propionate	SCFA	1	24,201	Threonine to propionate E. coli	PROP	90%

NZ_NIYS01000127 (original name was: NZ_NIYS01000127.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 56.1	NADH_dehydrogenase_I	E-MGC	8,351	43,234	NADH dehydrogenase I E. coli	NADHD	100%
Region 56.2	Respiratory_glycerol	E-MGC	48,089	72,153	GlycerolP to glyceroneP E. coli	GLYP	100%

NZ_NIYS01000089 (original name was: NZ_NIYS01000089.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 62.1	Formate_dehydrogenase	E-MGC	10,669	35,266	Formate dehydrogenase E. coli	FORM	100%

NZ_NIYS01000002 (original name was: NZ_NIYS01000002.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 63.1	Putrescine2spermidine	Aliphatic_amine	68,795	90,471

NZ_NIYS01000125 (original name was: NZ_NIYS01000125.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 67.1	hydroxybenzoate2phenol	Aromatic	26,160	48,180	hydroxybenzoate2phenol K. pneumoniae	PHE	100%

NZ_NIYS01000075 (original name was: NZ_NIYS01000075.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 70.1	carnitine_degradaion_caiTABCDE	npAA	21,206	43,495	Carnitine caiTABCDE E. coli	CAR	100%

NZ_NIYS01000124 (original name was: NZ_NIYS01000124.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 75.1	Fumarate2succinate	SCFA	7,280	29,778	Fumarate2succinate suc dh E. coli	SUC	100%

NZ_NIYS01000144 (original name was: NZ_NIYS01000144.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 77.1	Molybdopterin_dependent_oxidoreductase	E-MGC	1	18,842	DMSO-TMAO reducatse E. coli	DMSAO-TMAO	100%

NZ_NIYS01000048 (original name was: NZ_NIYS01000048.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 78.1	Nitrate_reductase,fatty_acids-unassigned	Putative	1	39,491	Nitrate reductase E. coli	NIR	80%

NZ_NIYS01000113 (original name was: NZ_NIYS01000113.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 84.1	Pyruvate2acetate-formate	SCFA	1	14,397	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

NZ_NIYS01000088 (original name was: NZ_NIYS01000088.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 85.1	Molybdopterin_dependent_oxidoreductase	E-MGC	13,487	40,538	DMSO-TMAO reducatse E. coli	DMSAO-TMAO	100%
Region 85.2	Rnf_complex	E-MGC	61,010	86,478	Rnf complex C. sporogenes	RNF	66%

NZ_NIYS01000112 (original name was: NZ_NIYS01000112.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 96.1	Arginine2putrescine	Aliphatic_amine	45,854	69,763	Arginine2putrescine E. coli	PUTR	75%
Region 96.2	Glycine_cleavage	Other	80,029	109,258	Glycine cleavage C. sticklandii	GLY	80%

No primary metabolite regions were found in these records:: NZ_NIYS01000094 (original name was: NZ_NIYS01000094.1); NZ_NIYS01000028 (original name was: NZ_NIYS01000028.1); NZ_NIYS01000038 (original name was: NZ_NIYS01000038.1); NZ_NIYS01000006 (original name was: NZ_NIYS01000006.1); NZ_NIYS01000151 (original name was: NZ_NIYS01000151.1); NZ_NIYS01000148 (original name was: NZ_NIYS01000148.1); NZ_NIYS01000139 (original name was: NZ_NIYS01000139.1); NZ_NIYS01000141 (original name was: NZ_NIYS01000141.1); NZ_NIYS01000025 (original name was: NZ_NIYS01000025.1); NZ_NIYS01000031 (original name was: NZ_NIYS01000031.1); NZ_NIYS01000050 (original name was: NZ_NIYS01000050.1); NZ_NIYS01000024 (original name was: NZ_NIYS01000024.1); NZ_NIYS01000064 (original name was: NZ_NIYS01000064.1); NZ_NIYS01000137 (original name was: NZ_NIYS01000137.1); NZ_NIYS01000086 (original name was: NZ_NIYS01000086.1); NZ_NIYS01000071 (original name was: NZ_NIYS01000071.1); NZ_NIYS01000043 (original name was: NZ_NIYS01000043.1); NZ_NIYS01000005 (original name was: NZ_NIYS01000005.1); NZ_NIYS01000143 (original name was: NZ_NIYS01000143.1); NZ_NIYS01000054 (original name was: NZ_NIYS01000054.1); NZ_NIYS01000036 (original name was: NZ_NIYS01000036.1); NZ_NIYS01000084 (original name was: NZ_NIYS01000084.1); NZ_NIYS01000052 (original name was: NZ_NIYS01000052.1); NZ_NIYS01000108 (original name was: NZ_NIYS01000108.1); NZ_NIYS01000114 (original name was: NZ_NIYS01000114.1); NZ_NIYS01000055 (original name was: NZ_NIYS01000055.1); NZ_NIYS01000015 (original name was: NZ_NIYS01000015.1); NZ_NIYS01000057 (original name was: NZ_NIYS01000057.1); NZ_NIYS01000058 (original name was: NZ_NIYS01000058.1); NZ_NIYS01000004 (original name was: NZ_NIYS01000004.1); NZ_NIYS01000107 (original name was: NZ_NIYS01000107.1); NZ_NIYS01000014 (original name was: NZ_NIYS01000014.1); NZ_NIYS01000009 (original name was: NZ_NIYS01000009.1); NZ_NIYS01000008 (original name was: NZ_NIYS01000008.1); NZ_NIYS01000118 (original name was: NZ_NIYS01000118.1); NZ_NIYS01000074 (original name was: NZ_NIYS01000074.1); NZ_NIYS01000120 (original name was: NZ_NIYS01000120.1); NZ_NIYS01000105 (original name was: NZ_NIYS01000105.1); NZ_NIYS01000087 (original name was: NZ_NIYS01000087.1); NZ_NIYS01000090 (original name was: NZ_NIYS01000090.1); NZ_NIYS01000011 (original name was: NZ_NIYS01000011.1); NZ_NIYS01000016 (original name was: NZ_NIYS01000016.1); NZ_NIYS01000131 (original name was: NZ_NIYS01000131.1); NZ_NIYS01000146 (original name was: NZ_NIYS01000146.1); NZ_NIYS01000081 (original name was: NZ_NIYS01000081.1); NZ_NIYS01000069 (original name was: NZ_NIYS01000069.1); NZ_NIYS01000078 (original name was: NZ_NIYS01000078.1); NZ_NIYS01000103 (original name was: NZ_NIYS01000103.1); NZ_NIYS01000073 (original name was: NZ_NIYS01000073.1); NZ_NIYS01000029 (original name was: NZ_NIYS01000029.1); NZ_NIYS01000147 (original name was: NZ_NIYS01000147.1); NZ_NIYS01000007 (original name was: NZ_NIYS01000007.1); NZ_NIYS01000042 (original name was: NZ_NIYS01000042.1); NZ_NIYS01000130 (original name was: NZ_NIYS01000130.1); NZ_NIYS01000027 (original name was: NZ_NIYS01000027.1); NZ_NIYS01000135 (original name was: NZ_NIYS01000135.1); NZ_NIYS01000085 (original name was: NZ_NIYS01000085.1); NZ_NIYS01000076 (original name was: NZ_NIYS01000076.1); NZ_NIYS01000065 (original name was: NZ_NIYS01000065.1); NZ_NIYS01000096 (original name was: NZ_NIYS01000096.1); NZ_NIYS01000001 (original name was: NZ_NIYS01000001.1); NZ_NIYS01000149 (original name was: NZ_NIYS01000149.1); NZ_NIYS01000049 (original name was: NZ_NIYS01000049.1); NZ_NIYS01000129 (original name was: NZ_NIYS01000129.1); NZ_NIYS01000060 (original name was: NZ_NIYS01000060.1); NZ_NIYS01000092 (original name was: NZ_NIYS01000092.1); NZ_NIYS01000047 (original name was: NZ_NIYS01000047.1); NZ_NIYS01000128 (original name was: NZ_NIYS01000128.1); NZ_NIYS01000136 (original name was: NZ_NIYS01000136.1); NZ_NIYS01000022 (original name was: NZ_NIYS01000022.1); NZ_NIYS01000041 (original name was: NZ_NIYS01000041.1); NZ_NIYS01000116 (original name was: NZ_NIYS01000116.1); NZ_NIYS01000070 (original name was: NZ_NIYS01000070.1); NZ_NIYS01000132 (original name was: NZ_NIYS01000132.1); NZ_NIYS01000122 (original name was: NZ_NIYS01000122.1); NZ_NIYS01000111 (original name was: NZ_NIYS01000111.1); NZ_NIYS01000098 (original name was: NZ_NIYS01000098.1); NZ_NIYS01000003 (original name was: NZ_NIYS01000003.1); NZ_NIYS01000079 (original name was: NZ_NIYS01000079.1); NZ_NIYS01000140 (original name was: NZ_NIYS01000140.1); NZ_NIYS01000021 (original name was: NZ_NIYS01000021.1); NZ_NIYS01000018 (original name was: NZ_NIYS01000018.1); NZ_NIYS01000051 (original name was: NZ_NIYS01000051.1); NZ_NIYS01000126 (original name was: NZ_NIYS01000126.1); NZ_NIYS01000046 (original name was: NZ_NIYS01000046.1); NZ_NIYS01000083 (original name was: NZ_NIYS01000083.1); NZ_NIYS01000154 (original name was: NZ_NIYS01000154.1); NZ_NIYS01000068 (original name was: NZ_NIYS01000068.1); NZ_NIYS01000106 (original name was: NZ_NIYS01000106.1); NZ_NIYS01000093 (original name was: NZ_NIYS01000093.1); NZ_NIYS01000152 (original name was: NZ_NIYS01000152.1); NZ_NIYS01000121 (original name was: NZ_NIYS01000121.1); NZ_NIYS01000080 (original name was: NZ_NIYS01000080.1); NZ_NIYS01000012 (original name was: NZ_NIYS01000012.1); NZ_NIYS01000033 (original name was: NZ_NIYS01000033.1); NZ_NIYS01000056 (original name was: NZ_NIYS01000056.1); NZ_NIYS01000030 (original name was: NZ_NIYS01000030.1); NZ_NIYS01000101 (original name was: NZ_NIYS01000101.1); NZ_NIYS01000034 (original name was: NZ_NIYS01000034.1); NZ_NIYS01000138 (original name was: NZ_NIYS01000138.1); NZ_NIYS01000123 (original name was: NZ_NIYS01000123.1); NZ_NIYS01000061 (original name was: NZ_NIYS01000061.1); NZ_NIYS01000095 (original name was: NZ_NIYS01000095.1); NZ_NIYS01000037 (original name was: NZ_NIYS01000037.1); NZ_NIYS01000017 (original name was: NZ_NIYS01000017.1); NZ_NIYS01000104 (original name was: NZ_NIYS01000104.1); NZ_NIYS01000026 (original name was: NZ_NIYS01000026.1); NZ_NIYS01000077 (original name was: NZ_NIYS01000077.1); NZ_NIYS01000032 (original name was: NZ_NIYS01000032.1); NZ_NIYS01000039 (original name was: NZ_NIYS01000039.1); NZ_NIYS01000066 (original name was: NZ_NIYS01000066.1); NZ_NIYS01000142 (original name was: NZ_NIYS01000142.1); NZ_NIYS01000099 (original name was: NZ_NIYS01000099.1); NZ_NIYS01000062 (original name was: NZ_NIYS01000062.1); NZ_NIYS01000133 (original name was: NZ_NIYS01000133.1); NZ_NIYS01000145 (original name was: NZ_NIYS01000145.1); NZ_NIYS01000053 (original name was: NZ_NIYS01000053.1); NZ_NIYS01000102 (original name was: NZ_NIYS01000102.1); NZ_NIYS01000134 (original name was: NZ_NIYS01000134.1); NZ_NIYS01000067 (original name was: NZ_NIYS01000067.1); NZ_NIYS01000110 (original name was: NZ_NIYS01000110.1); NZ_NIYS01000119 (original name was: NZ_NIYS01000119.1)

Compact view

c00011_NZ_NIYS.. - Region 1 - EUT_pathway

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Location: 41,727 - 88,800 nt. (total: 47,074 nt) Show pHMM detection rules used

EUT_pathway: (minimum(3, [Aldedh, BMC, Cob_adeno_trans, EutA, EutH, EutK_C, EutN_CcmL, EutQ, Fe-ADH, Fe-ADH_2, Malic_M, MreB_Mbl, PTA_PTB, PduV-EutP, malic]) and EutB and EutC)

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c00033_NZ_NIYS.. - Region 1 - Others_HGD_unassigned

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Location: 68,202 - 90,130 nt. (total: 21,929 nt) Show pHMM detection rules used

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

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core biosynthetic genes

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c00047_NZ_NIYS.. - Region 1 - TPP_AA_metabolism

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Location: 1 - 22,652 nt. (total: 22,652 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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c00048_NZ_NIYS.. - Region 1 - Fumarate2succinate

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Location: 1 - 19,163 nt. (total: 19,163 nt) Show pHMM detection rules used

Region on contig edge.

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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c00049_NZ_NIYS.. - Region 1 - fatty_acids-unassigned

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Location: 42,289 - 65,743 nt. (total: 23,455 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

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c00052_NZ_NIYS.. - Region 1 - Nitrate_reductase

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Location: 45,790 - 72,452 nt. (total: 26,663 nt) Show pHMM detection rules used

Nitrate_reductase: (Nitr_red_bet_C and Nitrate_red_del and Nitrate_red_gam and Molybdopterin and minimum(2, [Fer4_11, Molybdopterin, Molydop_binding, Nitr_red_alph_N]))

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c00052_NZ_NIYS.. - Region 2 - OD_aldehydes_related,OD_eut_pdu_related,OD_lactate_related,PFOR_II_pathway

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Location: 176,580 - 212,962 nt. (total: 36,383 nt) Show pHMM detection rules used

OD_eut_pdu_related: (minimum(1, [PFOR_II, POR, POR_N]) and minimum(2, [Aldedh, EutN_CcmL, EutQ, Fe-ADH, Fe-ADH_2, PTAC, PduV-EutP]) and not (Gly_radical or Gly_430_pcre or Gly_8-9_TMA))
OD_lactate_related: (minimum(1, [PFOR_II, POR, POR_N]) and minimum(2, [Aldedh, HAD, HAD_2, IDH, Ldh_1_C, Ldh_1_N, Succ_CoA_lig]) and not (PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene or Gly_radical or Gly_430_pcre or Gly_8-9_TMA))
OD_aldehydes_related: (minimum(1, [PFOR_II, POR, POR_N]) and minimum(1, [AFOR_C, AFOR_N, Aldedh]) and not (Gly_radical_scatole or Gly_radical or Gly_430_pcre or Gly_8-9_TMA))
PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

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c00053_NZ_NIYS.. - Region 1 - Threonine2propionate

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Location: 1 - 24,201 nt. (total: 24,201 nt) Show pHMM detection rules used

Region on contig edge.

Threonine2propionate: (minimum(3, [Acetate_kinase, Butyrate_kinase, MmgE_PrpD, PALP, SDH_alpha, SDH_beta, Trp_Tyr_perm]) and (PFL-like or PFL_acetate2 or PFL_acetate1) and Gly_radical and not NRDD)

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c00056_NZ_NIYS.. - Region 1 - NADH_dehydrogenase_I

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Location: 8,351 - 43,234 nt. (total: 34,884 nt) Show pHMM detection rules used

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

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c00056_NZ_NIYS.. - Region 2 - Respiratory_glycerol

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Location: 48,089 - 72,153 nt. (total: 24,065 nt) Show pHMM detection rules used

Respiratory_glycerol: (DAO and Fer2_BFD and FAD_binding_2 and Fer4_8)

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c00062_NZ_NIYS.. - Region 1 - Formate_dehydrogenase

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Location: 10,669 - 35,266 nt. (total: 24,598 nt) Show pHMM detection rules used

Formate_dehydrogenase: (Molybdopterin and Form-deh_trans and not (Nitr_red_bet_C or Nitr_red_alph_N) and minimum(3, [Fer4_11, Fer4_4, Molybdop_Fe4S4, Molydop_binding, Ni_hydr_CYTB]))

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c00063_NZ_NIYS.. - Region 1 - Putrescine2spermidine

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Location: 68,795 - 90,471 nt. (total: 21,677 nt) Show pHMM detection rules used

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

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core biosynthetic genes

additional biosynthetic genes

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c00067_NZ_NIYS.. - Region 1 - hydroxybenzoate2phenol

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Location: 26,160 - 48,180 nt. (total: 22,021 nt) Show pHMM detection rules used

hydroxybenzoate2phenol: (Flavoprotein and Phea_decarb and not ubi_syn)

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c00070_NZ_NIYS.. - Region 1 - carnitine_degradaion_caiTABCDE

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Location: 21,206 - 43,495 nt. (total: 22,290 nt) Show pHMM detection rules used

Region on contig edge.

carnitine_degradaion_caiTABCDE: (minimum(4, [ACD1_car, AMP-binding, Acyl-CoA_dh_1, Acyl-CoA_dh_2, BCCT, CoA_transf_3, ECH_2, Hexapep, Hexapep_2]) and Hexapep and ECH1_8_CARC)

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c00075_NZ_NIYS.. - Region 1 - Fumarate2succinate

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Location: 7,280 - 29,778 nt. (total: 22,499 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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c00077_NZ_NIYS.. - Region 1 - Molybdopterin_dependent_oxidoreductase

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Location: 1 - 18,842 nt. (total: 18,842 nt) Show pHMM detection rules used

Region on contig edge.

Molybdopterin_dependent_oxidoreductase: ((DmsC and Molybdopterin and minimum(2, [Fer4_11, Fer4_4, Molybdop_Fe4S4, Molydop_binding])) or (NrfD and Molybdopterin and minimum(2, [Fer4_11, Molybdop_Fe4S4, Molydop_binding]) and not (Nitr_red_bet_C or Nitrate_red_del)))

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c00078_NZ_NIYS.. - Region 1 - Nitrate_reductase,fatty_acids-unassigned

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Location: 1 - 39,491 nt. (total: 39,491 nt) Show pHMM detection rules used

Region on contig edge.

Nitrate_reductase: (Nitr_red_bet_C and Nitrate_red_del and Nitrate_red_gam and Molybdopterin and minimum(2, [Fer4_11, Molybdopterin, Molydop_binding, Nitr_red_alph_N]))
fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

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c00084_NZ_NIYS.. - Region 1 - Pyruvate2acetate-formate

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Location: 1 - 14,397 nt. (total: 14,397 nt) Show pHMM detection rules used

Region on contig edge.

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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c00085_NZ_NIYS.. - Region 1 - Molybdopterin_dependent_oxidoreductase

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Location: 13,487 - 40,538 nt. (total: 27,052 nt) Show pHMM detection rules used

Molybdopterin_dependent_oxidoreductase: ((DmsC and Molybdopterin and minimum(2, [Fer4_11, Fer4_4, Molybdop_Fe4S4, Molydop_binding])) or (NrfD and Molybdopterin and minimum(2, [Fer4_11, Molybdop_Fe4S4, Molydop_binding]) and not (Nitr_red_bet_C or Nitrate_red_del)))

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c00085_NZ_NIYS.. - Region 2 - Rnf_complex

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Location: 61,010 - 86,478 nt. (total: 25,469 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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c00096_NZ_NIYS.. - Region 1 - Arginine2putrescine

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Location: 45,854 - 69,763 nt. (total: 23,910 nt) Show pHMM detection rules used

Arginine2putrescine: (minimum(3, [AdoMet_dc, Amidinotransf, Arginase, OKR_DC_1, OKR_DC_1_7_arginine, OTCace]) or ((OKR_DC_1_5_ornithine or OKR_DC_1 or Orn_Arg_deC_N) and minimum(1, [Arginase, OTCace, OTCace_N, PAD_porph])))

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c00096_NZ_NIYS.. - Region 2 - Glycine_cleavage

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Location: 80,029 - 109,258 nt. (total: 29,230 nt) Show pHMM detection rules used

Glycine_cleavage: (minimum(2, [Aminotran_5, GCV_H, GCV_T, GDC-P, SoxG]) and GCV_H and GCV_T_C)

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