GCF_000687535.1_ASM68753v1_genomic - 4 region(s)

Identified primary metabolite regions

NZ_JHWC01000001 (original name was: NZ_JHWC01000001.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 1.1	NADH_dehydrogenase_I	E-MGC	263,381	297,685	NADH dehydrogenase I E. coli	NADHD	61%

NZ_JHWC01000002 (original name was: NZ_JHWC01000002.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 2.1	OD_lactate_related,porA	SCFA	2,912	26,788

NZ_JHWC01000008 (original name was: NZ_JHWC01000008.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 8.1	Putrescine2spermidine	Aliphatic_amine	46,729	67,532

NZ_JHWC01000009 (original name was: NZ_JHWC01000009.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 9.1	Fumarate2succinate	SCFA	1	15,984

No primary metabolite regions were found in these records:: NZ_JHWC01000003 (original name was: NZ_JHWC01000003.1); NZ_JHWC01000004 (original name was: NZ_JHWC01000004.1); NZ_JHWC01000005 (original name was: NZ_JHWC01000005.1); NZ_JHWC01000006 (original name was: NZ_JHWC01000006.1); NZ_JHWC01000007 (original name was: NZ_JHWC01000007.1); NZ_JHWC01000010 (original name was: NZ_JHWC01000010.1); NZ_JHWC01000011 (original name was: NZ_JHWC01000011.1); NZ_JHWC01000012 (original name was: NZ_JHWC01000012.1); NZ_JHWC01000013 (original name was: NZ_JHWC01000013.1); NZ_JHWC01000014 (original name was: NZ_JHWC01000014.1); NZ_JHWC01000015 (original name was: NZ_JHWC01000015.1); NZ_JHWC01000016 (original name was: NZ_JHWC01000016.1); NZ_JHWC01000017 (original name was: NZ_JHWC01000017.1); NZ_JHWC01000018 (original name was: NZ_JHWC01000018.1); NZ_JHWC01000019 (original name was: NZ_JHWC01000019.1); NZ_JHWC01000020 (original name was: NZ_JHWC01000020.1); NZ_JHWC01000021 (original name was: NZ_JHWC01000021.1); NZ_JHWC01000022 (original name was: NZ_JHWC01000022.1); NZ_JHWC01000023 (original name was: NZ_JHWC01000023.1); NZ_JHWC01000024 (original name was: NZ_JHWC01000024.1); NZ_JHWC01000025 (original name was: NZ_JHWC01000025.1); NZ_JHWC01000026 (original name was: NZ_JHWC01000026.1); NZ_JHWC01000027 (original name was: NZ_JHWC01000027.1); NZ_JHWC01000028 (original name was: NZ_JHWC01000028.1); NZ_JHWC01000029 (original name was: NZ_JHWC01000029.1)

Compact view

c00001_NZ_JHWC.. - Region 1 - NADH_dehydrogenase_I

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Location: 263,381 - 297,685 nt. (total: 34,305 nt) Show pHMM detection rules used

Region on contig edge.

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00002_NZ_JHWC.. - Region 1 - OD_lactate_related,porA

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Location: 2,912 - 26,788 nt. (total: 23,877 nt) Show pHMM detection rules used

OD_lactate_related: (minimum(1, [PFOR_II, POR, POR_N]) and minimum(2, [Aldedh, HAD, HAD_2, IDH, Ldh_1_C, Ldh_1_N, Succ_CoA_lig]) and not (PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene or Gly_radical or Gly_430_pcre or Gly_8-9_TMA))
porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00008_NZ_JHWC.. - Region 1 - Putrescine2spermidine

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Location: 46,729 - 67,532 nt. (total: 20,804 nt) Show pHMM detection rules used

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00009_NZ_JHWC.. - Region 1 - Fumarate2succinate

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Location: 1 - 15,984 nt. (total: 15,984 nt) Show pHMM detection rules used

Region on contig edge.

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.