GCF_000614065.1_ASM61406v1_genomic - 8 region(s)

Identified primary metabolite regions

NZ_BAKG01000022 (original name was: NZ_BAKG01000022.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 18.1	TPP_AA_metabolism	Putative	6,211	38,420	NADH dehydrogenase I Bacteroides sp.	NADHD	14%

NZ_BAKG01000020 (original name was: NZ_BAKG01000020.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 20.1	NADH_dehydrogenase_I	E-MGC	27,547	50,857	NADH dehydrogenase I Bacteroides sp.	NADHD	47%

NZ_BAKG01000015 (original name was: NZ_BAKG01000015.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 25.1	Glycine_cleavage	Other	29,202	53,756	Glycine cleavage C. sticklandii	GLY	80%

NZ_BAKG01000010 (original name was: NZ_BAKG01000010.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 30.1	PFOR_II_pathway	SCFA	39,272	62,847	PFOR II pathway B. thetaiotaomicron	PFORII	100%

NZ_BAKG01000009 (original name was: NZ_BAKG01000009.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 31.1	Pyruvate2acetate-formate	SCFA	77,449	100,342	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

NZ_BAKG01000008 (original name was: NZ_BAKG01000008.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 32.1	Respiratory_glycerol	E-MGC	4,981	29,196	GlycerolP to glyceroneP E. coli	GLYP	100%

NZ_BAKG01000006 (original name was: NZ_BAKG01000006.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 34.1	Fumarate2succinate	SCFA	115,964	139,435	Fumarate to succinate B. thetaiotaomicron	SUC	100%

NZ_BAKG01000005 (original name was: NZ_BAKG01000005.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 35.1	TPP_fatty_acids	Putative	71,734	95,888

No primary metabolite regions were found in these records:: NZ_BAKG01000039 (original name was: NZ_BAKG01000039.1); NZ_BAKG01000038 (original name was: NZ_BAKG01000038.1); NZ_BAKG01000037 (original name was: NZ_BAKG01000037.1); NZ_BAKG01000036 (original name was: NZ_BAKG01000036.1); NZ_BAKG01000035 (original name was: NZ_BAKG01000035.1); NZ_BAKG01000034 (original name was: NZ_BAKG01000034.1); NZ_BAKG01000033 (original name was: NZ_BAKG01000033.1); NZ_BAKG01000032 (original name was: NZ_BAKG01000032.1); NZ_BAKG01000031 (original name was: NZ_BAKG01000031.1); NZ_BAKG01000030 (original name was: NZ_BAKG01000030.1); NZ_BAKG01000029 (original name was: NZ_BAKG01000029.1); NZ_BAKG01000028 (original name was: NZ_BAKG01000028.1); NZ_BAKG01000027 (original name was: NZ_BAKG01000027.1); NZ_BAKG01000026 (original name was: NZ_BAKG01000026.1); NZ_BAKG01000025 (original name was: NZ_BAKG01000025.1); NZ_BAKG01000024 (original name was: NZ_BAKG01000024.1); NZ_BAKG01000023 (original name was: NZ_BAKG01000023.1); NZ_BAKG01000021 (original name was: NZ_BAKG01000021.1); NZ_BAKG01000019 (original name was: NZ_BAKG01000019.1); NZ_BAKG01000018 (original name was: NZ_BAKG01000018.1); NZ_BAKG01000017 (original name was: NZ_BAKG01000017.1); NZ_BAKG01000016 (original name was: NZ_BAKG01000016.1); NZ_BAKG01000014 (original name was: NZ_BAKG01000014.1); NZ_BAKG01000013 (original name was: NZ_BAKG01000013.1); NZ_BAKG01000012 (original name was: NZ_BAKG01000012.1); NZ_BAKG01000011 (original name was: NZ_BAKG01000011.1); NZ_BAKG01000007 (original name was: NZ_BAKG01000007.1); NZ_BAKG01000004 (original name was: NZ_BAKG01000004.1); NZ_BAKG01000003 (original name was: NZ_BAKG01000003.1); NZ_BAKG01000002 (original name was: NZ_BAKG01000002.1); NZ_BAKG01000001 (original name was: NZ_BAKG01000001.1)

Compact view

c00018_NZ_BAKG.. - Region 1 - TPP_AA_metabolism

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Location: 6,211 - 38,420 nt. (total: 32,210 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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c00020_NZ_BAKG.. - Region 1 - NADH_dehydrogenase_I

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Location: 27,547 - 50,857 nt. (total: 23,311 nt) Show pHMM detection rules used

Region on contig edge.

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

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c00025_NZ_BAKG.. - Region 1 - Glycine_cleavage

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Location: 29,202 - 53,756 nt. (total: 24,555 nt) Show pHMM detection rules used

Glycine_cleavage: (minimum(2, [Aminotran_5, GCV_H, GCV_T, GDC-P, SoxG]) and GCV_H and GCV_T_C)

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c00030_NZ_BAKG.. - Region 1 - PFOR_II_pathway

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Location: 39,272 - 62,847 nt. (total: 23,576 nt) Show pHMM detection rules used

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

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c00031_NZ_BAKG.. - Region 1 - Pyruvate2acetate-formate

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Location: 77,449 - 100,342 nt. (total: 22,894 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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c00032_NZ_BAKG.. - Region 1 - Respiratory_glycerol

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Location: 4,981 - 29,196 nt. (total: 24,216 nt) Show pHMM detection rules used

Respiratory_glycerol: (DAO and Fer2_BFD and FAD_binding_2 and Fer4_8)

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c00034_NZ_BAKG.. - Region 1 - Fumarate2succinate

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Location: 115,964 - 139,435 nt. (total: 23,472 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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c00035_NZ_BAKG.. - Region 1 - TPP_fatty_acids

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Location: 71,734 - 95,888 nt. (total: 24,155 nt) Show pHMM detection rules used

TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))

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regulatory genes

resistance genes

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