GCF_018380295.1_ASM1838029v1_genomic - 25 region(s)

Identified primary metabolite regions

c00010_NZ_JAGZ.. (original name was: NZ_JAGZTV010000006.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 10.1	Oxidative_glycerol	Other	64,028	90,582

c00014_NZ_JAGZ.. (original name was: NZ_JAGZTV010000007.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 14.1	EUT_pathway	SCFA-other	50,208	86,409	Ethanolamine degradation S. typhimurium	EUT	94%

c00017_NZ_JAGZ.. (original name was: NZ_JAGZTV010000008.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 17.1	Nitrate_reductase,Formate_dehydrogenase	E-MGC	113,964	157,338	Nitrate reductase E. coli	NIR	80%

c00018_NZ_JAGZ.. (original name was: NZ_JAGZTV010000009.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 18.1	Nitrate_reductase	E-MGC	1	26,872	Nitrate reductase E. coli	NIR	80%

c00024_NZ_JAGZ.. (original name was: NZ_JAGZTV010000012.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 24.1	Others_HGD_unassigned	Putative	82,723	104,650
Region 24.2	TMA	SCFA-other	108,320	137,093	Trimethylamine synthesis C. sporogenes	TMA	66%

c00025_NZ_JAGZ.. (original name was: NZ_JAGZTV010000013.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 25.1	Putrescine2spermidine	Aliphatic_amine	157,828	173,806

c00026_NZ_JAGZ.. (original name was: NZ_JAGZTV010000014.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 26.1	hydroxybenzoate2phenol	Aromatic	82,982	105,005	hydroxybenzoate2phenol K. pneumoniae	PHE	100%
Region 26.2	pdu	SCFA-other	175,007	209,623	Propanediol degradation S. enterica	PDU	95%

c00028_NZ_JAGZ.. (original name was: NZ_JAGZTV010000016.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 28.1	histidine2glutamate_hutHGIU_operon	Other	55,270	88,612	Histidine to glutamate K. pneumoniae	GLU	60%

c00029_NZ_JAGZ.. (original name was: NZ_JAGZTV010000017.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 29.1	Formate_dehydrogenase	E-MGC	12,838	37,371	Formate dehydrogenase E. coli	FORM	100%

c00030_NZ_JAGZ.. (original name was: NZ_JAGZTV010000018.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 30.1	Glycine_cleavage	Other	64,250	88,773	Glycine cleavage C. sticklandii	GLY	60%
Region 30.2	TPP_fatty_acids,Arginine2putrescine	Aliphatic_amine	97,859	135,318	Arginine2putrescine E. coli	PUTR	50%

c00039_NZ_JAGZ.. (original name was: NZ_JAGZTV010000001.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 39.1	Molybdopterin_dependent_oxidoreductase	E-MGC	159,457	184,028	DMSO-TMAO reducatse E. coli	DMSAO-TMAO	100%
Region 39.2	Rnf_complex	E-MGC	253,423	279,059	Rnf complex C. sporogenes	RNF	66%

c00041_NZ_JAGZ.. (original name was: NZ_JAGZTV010000025.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 41.1	Fumarate2succinate	SCFA	30,413	52,807	Fumarate2succinate fum red E. coli	SUC	100%

c00047_NZ_JAGZ.. (original name was: NZ_JAGZTV010000029.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 47.1	fatty_acids-unassigned	Putative	1	17,795
Region 47.2	TPP_AA_metabolism	Putative	75,102	97,639

c00048_NZ_JAGZ.. (original name was: NZ_JAGZTV010000030.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 48.1	PFOR_II_pathway	SCFA	21,715	45,242	PFOR II pathway B. thetaiotaomicron	PFORII	100%

c00050_NZ_JAGZ.. (original name was: NZ_JAGZTV010000002.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 50.1	Formate_dehydrogenase	E-MGC	110,241	134,832	Formate dehydrogenase E. coli	FORM	100%
Region 50.2	Respiratory_glycerol	E-MGC	269,930	293,976	GlycerolP to glyceroneP E. coli	GLYP	100%
Region 50.3	NADH_dehydrogenase_I	E-MGC	303,855	338,872	NADH dehydrogenase I E. coli	NADHD	100%
Region 50.4	fatty_acids-unassigned	Putative	357,653	390,510

c00054_NZ_JAGZ.. (original name was: NZ_JAGZTV010000003.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 54.1	Fumarate2succinate	SCFA	163,546	186,044	Fumarate2succinate suc dh E. coli	SUC	100%
Region 54.2	Molybdopterin_dependent_oxidoreductase,Pyruvate2acetate-formate	SCFA	379,406	412,831	DMSO-TMAO reducatse E. coli	DMSAO-TMAO	100%

Region	Type	Class	From	To	Most similar known cluster	Similarity
Region 10.1	Oxidative_glycerol	Other	64,028	90,582
Region 14.1	EUT_pathway	SCFA-other	50,208	86,409	Ethanolamine degradation S. typhimurium	EUT	94%
Region 17.1	Nitrate_reductase,Formate_dehydrogenase	E-MGC	113,964	157,338	Nitrate reductase E. coli	NIR	80%
Region 18.1	Nitrate_reductase	E-MGC	1	26,872	Nitrate reductase E. coli	NIR	80%
Region 24.1	Others_HGD_unassigned	Putative	82,723	104,650
Region 24.2	TMA	SCFA-other	108,320	137,093	Trimethylamine synthesis C. sporogenes	TMA	66%
Region 25.1	Putrescine2spermidine	Aliphatic_amine	157,828	173,806
Region 26.1	hydroxybenzoate2phenol	Aromatic	82,982	105,005	hydroxybenzoate2phenol K. pneumoniae	PHE	100%
Region 26.2	pdu	SCFA-other	175,007	209,623	Propanediol degradation S. enterica	PDU	95%
Region 28.1	histidine2glutamate_hutHGIU_operon	Other	55,270	88,612	Histidine to glutamate K. pneumoniae	GLU	60%
Region 29.1	Formate_dehydrogenase	E-MGC	12,838	37,371	Formate dehydrogenase E. coli	FORM	100%
Region 30.1	Glycine_cleavage	Other	64,250	88,773	Glycine cleavage C. sticklandii	GLY	60%
Region 30.2	TPP_fatty_acids,Arginine2putrescine	Aliphatic_amine	97,859	135,318	Arginine2putrescine E. coli	PUTR	50%
Region 39.1	Molybdopterin_dependent_oxidoreductase	E-MGC	159,457	184,028	DMSO-TMAO reducatse E. coli	DMSAO-TMAO	100%
Region 39.2	Rnf_complex	E-MGC	253,423	279,059	Rnf complex C. sporogenes	RNF	66%
Region 41.1	Fumarate2succinate	SCFA	30,413	52,807	Fumarate2succinate fum red E. coli	SUC	100%
Region 47.1	fatty_acids-unassigned	Putative	1	17,795
Region 47.2	TPP_AA_metabolism	Putative	75,102	97,639
Region 48.1	PFOR_II_pathway	SCFA	21,715	45,242	PFOR II pathway B. thetaiotaomicron	PFORII	100%
Region 50.1	Formate_dehydrogenase	E-MGC	110,241	134,832	Formate dehydrogenase E. coli	FORM	100%
Region 50.2	Respiratory_glycerol	E-MGC	269,930	293,976	GlycerolP to glyceroneP E. coli	GLYP	100%
Region 50.3	NADH_dehydrogenase_I	E-MGC	303,855	338,872	NADH dehydrogenase I E. coli	NADHD	100%
Region 50.4	fatty_acids-unassigned	Putative	357,653	390,510
Region 54.1	Fumarate2succinate	SCFA	163,546	186,044	Fumarate2succinate suc dh E. coli	SUC	100%
Region 54.2	Molybdopterin_dependent_oxidoreductase,Pyruvate2acetate-formate	SCFA	379,406	412,831	DMSO-TMAO reducatse E. coli	DMSAO-TMAO	100%

No primary metabolite regions were found in these records:: c00001_NZ_JAGZ.. (original name was: NZ_JAGZTV010000050.1); c00002_NZ_JAGZ.. (original name was: NZ_JAGZTV010000037.1); c00003_NZ_JAGZ.. (original name was: NZ_JAGZTV010000038.1); c00004_NZ_JAGZ.. (original name was: NZ_JAGZTV010000039.1); c00005_NZ_JAGZ.. (original name was: NZ_JAGZTV010000004.1); c00006_NZ_JAGZ.. (original name was: NZ_JAGZTV010000051.1); c00007_NZ_JAGZ.. (original name was: NZ_JAGZTV010000040.1); c00008_NZ_JAGZ.. (original name was: NZ_JAGZTV010000005.1); c00009_NZ_JAGZ.. (original name was: NZ_JAGZTV010000041.1); c00011_NZ_JAGZ.. (original name was: NZ_JAGZTV010000042.1); c00012_NZ_JAGZ.. (original name was: NZ_JAGZTV010000052.1); c00013_NZ_JAGZ.. (original name was: NZ_JAGZTV010000043.1); c00015_NZ_JAGZ.. (original name was: NZ_JAGZTV010000044.1); c00016_NZ_JAGZ.. (original name was: NZ_JAGZTV010000045.1); c00019_NZ_JAGZ.. (original name was: NZ_JAGZTV010000053.1); c00020_NZ_JAGZ.. (original name was: NZ_JAGZTV010000054.1); c00021_NZ_JAGZ.. (original name was: NZ_JAGZTV010000010.1); c00022_NZ_JAGZ.. (original name was: NZ_JAGZTV010000011.1); c00023_NZ_JAGZ.. (original name was: NZ_JAGZTV010000046.1); c00027_NZ_JAGZ.. (original name was: NZ_JAGZTV010000015.1); c00031_NZ_JAGZ.. (original name was: NZ_JAGZTV010000055.1); c00032_NZ_JAGZ.. (original name was: NZ_JAGZTV010000019.1); c00033_NZ_JAGZ.. (original name was: NZ_JAGZTV010000020.1); c00034_NZ_JAGZ.. (original name was: NZ_JAGZTV010000021.1); c00035_NZ_JAGZ.. (original name was: NZ_JAGZTV010000022.1); c00036_NZ_JAGZ.. (original name was: NZ_JAGZTV010000056.1); c00037_NZ_JAGZ.. (original name was: NZ_JAGZTV010000023.1); c00038_NZ_JAGZ.. (original name was: NZ_JAGZTV010000024.1); c00040_NZ_JAGZ.. (original name was: NZ_JAGZTV010000047.1); c00042_NZ_JAGZ.. (original name was: NZ_JAGZTV010000057.1); c00043_NZ_JAGZ.. (original name was: NZ_JAGZTV010000026.1); c00044_NZ_JAGZ.. (original name was: NZ_JAGZTV010000027.1); c00045_NZ_JAGZ.. (original name was: NZ_JAGZTV010000048.1); c00046_NZ_JAGZ.. (original name was: NZ_JAGZTV010000028.1); c00049_NZ_JAGZ.. (original name was: NZ_JAGZTV010000031.1); c00051_NZ_JAGZ.. (original name was: NZ_JAGZTV010000032.1); c00052_NZ_JAGZ.. (original name was: NZ_JAGZTV010000033.1); c00053_NZ_JAGZ.. (original name was: NZ_JAGZTV010000034.1); c00055_NZ_JAGZ.. (original name was: NZ_JAGZTV010000049.1); c00056_NZ_JAGZ.. (original name was: NZ_JAGZTV010000035.1); c00057_NZ_JAGZ.. (original name was: NZ_JAGZTV010000036.1)

Compact view

c00010_NZ_JAGZ.. - Region 1 - Oxidative_glycerol

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Location: 64,028 - 90,582 nt. (total: 26,555 nt) Show pHMM detection rules used

Oxidative_glycerol: ((Fe-ADH or Fe-ADH_2) and Dak1 and Dak2)

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c00014_NZ_JAGZ.. - Region 1 - EUT_pathway

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Location: 50,208 - 86,409 nt. (total: 36,202 nt) Show pHMM detection rules used

EUT_pathway: (minimum(3, [Aldedh, BMC, Cob_adeno_trans, EutA, EutH, EutK_C, EutN_CcmL, EutQ, Fe-ADH, Fe-ADH_2, Malic_M, MreB_Mbl, PTA_PTB, PduV-EutP, malic]) and EutB and EutC)

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c00017_NZ_JAGZ.. - Region 1 - Formate_dehydrogenase,Nitrate_reductase

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Location: 113,964 - 157,338 nt. (total: 43,375 nt) Show pHMM detection rules used

Nitrate_reductase: (Nitr_red_bet_C and Nitrate_red_del and Nitrate_red_gam and Molybdopterin and minimum(2, [Fer4_11, Molybdopterin, Molydop_binding, Nitr_red_alph_N]))
Formate_dehydrogenase: (Molybdopterin and Form-deh_trans and not (Nitr_red_bet_C or Nitr_red_alph_N) and minimum(3, [Fer4_11, Fer4_4, Molybdop_Fe4S4, Molydop_binding, Ni_hydr_CYTB]))

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c00018_NZ_JAGZ.. - Region 1 - Nitrate_reductase

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Location: 1 - 26,872 nt. (total: 26,872 nt) Show pHMM detection rules used

Region on contig edge.

Nitrate_reductase: (Nitr_red_bet_C and Nitrate_red_del and Nitrate_red_gam and Molybdopterin and minimum(2, [Fer4_11, Molybdopterin, Molydop_binding, Nitr_red_alph_N]))

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c00024_NZ_JAGZ.. - Region 1 - Others_HGD_unassigned

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Location: 82,723 - 104,650 nt. (total: 21,928 nt) Show pHMM detection rules used

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

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c00024_NZ_JAGZ.. - Region 2 - TMA

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Location: 108,320 - 137,093 nt. (total: 28,774 nt) Show pHMM detection rules used

TMA: (minimum(2, [Aldedh, BMC, PduV-EutP, Radical_SAM]) and PFL_9_tma and Gly_8-9_TMA and not NRDD)

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c00025_NZ_JAGZ.. - Region 1 - Putrescine2spermidine

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Location: 157,828 - 173,806 nt. (total: 15,979 nt) Show pHMM detection rules used

Region on contig edge.

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

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c00026_NZ_JAGZ.. - Region 1 - hydroxybenzoate2phenol

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Location: 82,982 - 105,005 nt. (total: 22,024 nt) Show pHMM detection rules used

hydroxybenzoate2phenol: (Flavoprotein and Phea_decarb and not ubi_syn)

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c00026_NZ_JAGZ.. - Region 2 - pdu

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Location: 175,007 - 209,623 nt. (total: 34,617 nt) Show pHMM detection rules used

pdu: (minimum(2, [Aldedh, BMC, Cob_adeno_trans, EutN_CcmL, Fe-ADH, Fe-ADH_2, PDU_like, PTAC, PduV-EutP]) and Dehydratase_MU and Dehydratase_SU and Dehydratase_LU)

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c00028_NZ_JAGZ.. - Region 1 - histidine2glutamate_hutHGIU_operon

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Location: 55,270 - 88,612 nt. (total: 33,343 nt) Show pHMM detection rules used

histidine2glutamate_hutHGIU_operon: (minimum(3, [Amidohydro_1, Amidohydro_3, Arginase, FGase, Urocanase]) and Lyase_aromatic and Urocanase_C)

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c00029_NZ_JAGZ.. - Region 1 - Formate_dehydrogenase

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Location: 12,838 - 37,371 nt. (total: 24,534 nt) Show pHMM detection rules used

Formate_dehydrogenase: (Molybdopterin and Form-deh_trans and not (Nitr_red_bet_C or Nitr_red_alph_N) and minimum(3, [Fer4_11, Fer4_4, Molybdop_Fe4S4, Molydop_binding, Ni_hydr_CYTB]))

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c00030_NZ_JAGZ.. - Region 1 - Glycine_cleavage

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Location: 64,250 - 88,773 nt. (total: 24,524 nt) Show pHMM detection rules used

Glycine_cleavage: (minimum(2, [Aminotran_5, GCV_H, GCV_T, GDC-P, SoxG]) and GCV_H and GCV_T_C)

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c00030_NZ_JAGZ.. - Region 2 - Arginine2putrescine,TPP_fatty_acids

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Location: 97,859 - 135,318 nt. (total: 37,460 nt) Show pHMM detection rules used

TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))
Arginine2putrescine: (minimum(3, [AdoMet_dc, Amidinotransf, Arginase, OKR_DC_1, OKR_DC_1_7_arginine, OTCace]) or ((OKR_DC_1_5_ornithine or OKR_DC_1 or Orn_Arg_deC_N) and minimum(1, [Arginase, OTCace, OTCace_N, PAD_porph])))

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c00039_NZ_JAGZ.. - Region 1 - Molybdopterin_dependent_oxidoreductase

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Location: 159,457 - 184,028 nt. (total: 24,572 nt) Show pHMM detection rules used

Molybdopterin_dependent_oxidoreductase: ((DmsC and Molybdopterin and minimum(2, [Fer4_11, Fer4_4, Molybdop_Fe4S4, Molydop_binding])) or (NrfD and Molybdopterin and minimum(2, [Fer4_11, Molybdop_Fe4S4, Molydop_binding]) and not (Nitr_red_bet_C or Nitrate_red_del)))

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c00039_NZ_JAGZ.. - Region 2 - Rnf_complex

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Location: 253,423 - 279,059 nt. (total: 25,637 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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c00041_NZ_JAGZ.. - Region 1 - Fumarate2succinate

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Location: 30,413 - 52,807 nt. (total: 22,395 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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c00047_NZ_JAGZ.. - Region 1 - fatty_acids-unassigned

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Location: 1 - 17,795 nt. (total: 17,795 nt) Show pHMM detection rules used

Region on contig edge.

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

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c00047_NZ_JAGZ.. - Region 2 - TPP_AA_metabolism

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Location: 75,102 - 97,639 nt. (total: 22,538 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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c00048_NZ_JAGZ.. - Region 1 - PFOR_II_pathway

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Location: 21,715 - 45,242 nt. (total: 23,528 nt) Show pHMM detection rules used

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

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c00050_NZ_JAGZ.. - Region 1 - Formate_dehydrogenase

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Location: 110,241 - 134,832 nt. (total: 24,592 nt) Show pHMM detection rules used

Formate_dehydrogenase: (Molybdopterin and Form-deh_trans and not (Nitr_red_bet_C or Nitr_red_alph_N) and minimum(3, [Fer4_11, Fer4_4, Molybdop_Fe4S4, Molydop_binding, Ni_hydr_CYTB]))

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c00050_NZ_JAGZ.. - Region 2 - Respiratory_glycerol

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Location: 269,930 - 293,976 nt. (total: 24,047 nt) Show pHMM detection rules used

Respiratory_glycerol: (DAO and Fer2_BFD and FAD_binding_2 and Fer4_8)

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c00050_NZ_JAGZ.. - Region 3 - NADH_dehydrogenase_I

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Location: 303,855 - 338,872 nt. (total: 35,018 nt) Show pHMM detection rules used

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

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c00050_NZ_JAGZ.. - Region 4 - fatty_acids-unassigned

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Location: 357,653 - 390,510 nt. (total: 32,858 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

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c00054_NZ_JAGZ.. - Region 1 - Fumarate2succinate

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Location: 163,546 - 186,044 nt. (total: 22,499 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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c00054_NZ_JAGZ.. - Region 2 - Molybdopterin_dependent_oxidoreductase,Pyruvate2acetate-formate

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Location: 379,406 - 412,831 nt. (total: 33,426 nt) Show pHMM detection rules used

Molybdopterin_dependent_oxidoreductase: ((DmsC and Molybdopterin and minimum(2, [Fer4_11, Fer4_4, Molybdop_Fe4S4, Molydop_binding])) or (NrfD and Molybdopterin and minimum(2, [Fer4_11, Molybdop_Fe4S4, Molydop_binding]) and not (Nitr_red_bet_C or Nitrate_red_del)))
Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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