GCF_014200295.1_ASM1420029v1_genomic - 8 region(s)

Identified primary metabolite regions

c00001_NZ_JACH.. (original name was: NZ_JACHBK010000001.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 1.1	fatty_acids-unassigned	Putative	397,970	423,643

c00002_NZ_JACH.. (original name was: NZ_JACHBK010000002.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 2.1	histidine2glutamate_hutHGIU_operon,fatty_acids-unassigned	Putative	76,687	121,439
Region 2.2	NADH_dehydrogenase_I	E-MGC	577,038	602,866	NADH dehydrogenase I E. coli	NADHD	61%

c00003_NZ_JACH.. (original name was: NZ_JACHBK010000003.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 3.1	Glycine_cleavage	Other	99,859	133,346	Glycine cleavage C. sticklandii	GLY	60%

c00004_NZ_JACH.. (original name was: NZ_JACHBK010000004.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 4.1	histidine2glutamate_hutHGIU_operon	Other	388,384	419,344	Histidine to glutamate K. pneumoniae	GLU	80%

c00007_NZ_JACH.. (original name was: NZ_JACHBK010000007.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 7.1	Fumarate2succinate	SCFA	104,187	127,270	Fumarate2succinate suc dh E. coli	SUC	100%

c00008_NZ_JACH.. (original name was: NZ_JACHBK010000008.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 8.1	TPP_fatty_acids	Putative	38,101	76,316

c00013_NZ_JACH.. (original name was: NZ_JACHBK010000013.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 13.1	NADH_dehydrogenase_I	E-MGC	55,167	90,451	NADH dehydrogenase I E. coli	NADHD	61%

Region	Type	Class	From	To	Most similar known cluster	Similarity
Region 1.1	fatty_acids-unassigned	Putative	397,970	423,643
Region 2.1	histidine2glutamate_hutHGIU_operon,fatty_acids-unassigned	Putative	76,687	121,439
Region 2.2	NADH_dehydrogenase_I	E-MGC	577,038	602,866	NADH dehydrogenase I E. coli	NADHD	61%
Region 3.1	Glycine_cleavage	Other	99,859	133,346	Glycine cleavage C. sticklandii	GLY	60%
Region 4.1	histidine2glutamate_hutHGIU_operon	Other	388,384	419,344	Histidine to glutamate K. pneumoniae	GLU	80%
Region 7.1	Fumarate2succinate	SCFA	104,187	127,270	Fumarate2succinate suc dh E. coli	SUC	100%
Region 8.1	TPP_fatty_acids	Putative	38,101	76,316
Region 13.1	NADH_dehydrogenase_I	E-MGC	55,167	90,451	NADH dehydrogenase I E. coli	NADHD	61%

No primary metabolite regions were found in these records:: c00005_NZ_JACH.. (original name was: NZ_JACHBK010000005.1); c00006_NZ_JACH.. (original name was: NZ_JACHBK010000006.1); c00009_NZ_JACH.. (original name was: NZ_JACHBK010000009.1); c00010_NZ_JACH.. (original name was: NZ_JACHBK010000010.1); c00011_NZ_JACH.. (original name was: NZ_JACHBK010000011.1); c00012_NZ_JACH.. (original name was: NZ_JACHBK010000012.1); c00014_NZ_JACH.. (original name was: NZ_JACHBK010000014.1); c00015_NZ_JACH.. (original name was: NZ_JACHBK010000015.1); c00016_NZ_JACH.. (original name was: NZ_JACHBK010000016.1); c00017_NZ_JACH.. (original name was: NZ_JACHBK010000017.1); c00018_NZ_JACH.. (original name was: NZ_JACHBK010000018.1); c00019_NZ_JACH.. (original name was: NZ_JACHBK010000019.1); c00020_NZ_JACH.. (original name was: NZ_JACHBK010000020.1); c00021_NZ_JACH.. (original name was: NZ_JACHBK010000021.1); c00022_NZ_JACH.. (original name was: NZ_JACHBK010000022.1); c00023_NZ_JACH.. (original name was: NZ_JACHBK010000023.1); c00024_NZ_JACH.. (original name was: NZ_JACHBK010000024.1); c00025_NZ_JACH.. (original name was: NZ_JACHBK010000025.1); c00026_NZ_JACH.. (original name was: NZ_JACHBK010000026.1); c00027_NZ_JACH.. (original name was: NZ_JACHBK010000027.1); c00028_NZ_JACH.. (original name was: NZ_JACHBK010000028.1)

Compact view

c00001_NZ_JACH.. - Region 1 - fatty_acids-unassigned

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Location: 397,970 - 423,643 nt. (total: 25,674 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

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Similar known gene clusters

No matches found.

c00002_NZ_JACH.. - Region 1 - fatty_acids-unassigned,histidine2glutamate_hutHGIU_operon

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Location: 76,687 - 121,439 nt. (total: 44,753 nt) Show pHMM detection rules used

histidine2glutamate_hutHGIU_operon: (minimum(3, [Amidohydro_1, Amidohydro_3, Arginase, FGase, Urocanase]) and Lyase_aromatic and Urocanase_C)
fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00002_NZ_JACH.. - Region 2 - NADH_dehydrogenase_I

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Location: 577,038 - 602,866 nt. (total: 25,829 nt) Show pHMM detection rules used

Region on contig edge.

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00003_NZ_JACH.. - Region 1 - Glycine_cleavage

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Location: 99,859 - 133,346 nt. (total: 33,488 nt) Show pHMM detection rules used

Glycine_cleavage: (minimum(2, [Aminotran_5, GCV_H, GCV_T, GDC-P, SoxG]) and GCV_H and GCV_T_C)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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Similar known gene clusters

c00004_NZ_JACH.. - Region 1 - histidine2glutamate_hutHGIU_operon

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Location: 388,384 - 419,344 nt. (total: 30,961 nt) Show pHMM detection rules used

histidine2glutamate_hutHGIU_operon: (minimum(3, [Amidohydro_1, Amidohydro_3, Arginase, FGase, Urocanase]) and Lyase_aromatic and Urocanase_C)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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c00007_NZ_JACH.. - Region 1 - Fumarate2succinate

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Location: 104,187 - 127,270 nt. (total: 23,084 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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c00008_NZ_JACH.. - Region 1 - TPP_fatty_acids

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Location: 38,101 - 76,316 nt. (total: 38,216 nt) Show pHMM detection rules used

TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))

Legend:

core biosynthetic genes

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transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

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No matches found.

c00013_NZ_JACH.. - Region 1 - NADH_dehydrogenase_I

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Location: 55,167 - 90,451 nt. (total: 35,285 nt) Show pHMM detection rules used

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters