GCF_902388125.1_UHGG_MGYG-HGUT-02540_genomic - 7 region(s)

Identified primary metabolite regions

c00013_NZ_CABM.. (original name was: NZ_CABMOJ010000016.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 13.1	succinate2propionate	SCFA	99,497	132,363	Succinate to propionate B. theta	PRO	33%

c00014_NZ_CABM.. (original name was: NZ_CABMOJ010000017.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 14.1	TPP_fatty_acids,NADH_dehydrogenase_I	E-MGC	96,264	135,301	NADH dehydrogenase I Bacteroides sp.	NADHD	47%

c00015_NZ_CABM.. (original name was: NZ_CABMOJ010000018.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 15.1	Fumarate2succinate	SCFA	16,018	29,672	Fumarate to succinate B. thetaiotaomicron	SUC	100%

c00019_NZ_CABM.. (original name was: NZ_CABMOJ010000022.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 19.1	Pyruvate2acetate-formate	SCFA	160,338	183,320	Pyruvate to acetate-formate E. coli	PFL_acetate	100%
Region 19.2	TPP_AA_metabolism	Putative	340,647	375,598
Region 19.3	PFOR_II_pathway	SCFA	468,142	491,690	PFOR II pathway B. thetaiotaomicron	PFORII	100%

c00050_NZ_CABM.. (original name was: NZ_CABMOJ010000074.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 50.1	Rnf_complex	E-MGC	23,774	48,968	Rnf complex C. sporogenes	RNF	83%

No primary metabolite regions were found in these records:: c00001_NZ_CABM.. (original name was: NZ_CABMOJ010000001.1); c00002_NZ_CABM.. (original name was: NZ_CABMOJ010000002.1); c00003_NZ_CABM.. (original name was: NZ_CABMOJ010000003.1); c00004_NZ_CABM.. (original name was: NZ_CABMOJ010000004.1); c00005_NZ_CABM.. (original name was: NZ_CABMOJ010000005.1); c00006_NZ_CABM.. (original name was: NZ_CABMOJ010000006.1); c00007_NZ_CABM.. (original name was: NZ_CABMOJ010000007.1); c00008_NZ_CABM.. (original name was: NZ_CABMOJ010000008.1); c00009_NZ_CABM.. (original name was: NZ_CABMOJ010000010.1); c00010_NZ_CABM.. (original name was: NZ_CABMOJ010000011.1); c00011_NZ_CABM.. (original name was: NZ_CABMOJ010000014.1); c00012_NZ_CABM.. (original name was: NZ_CABMOJ010000015.1); c00016_NZ_CABM.. (original name was: NZ_CABMOJ010000019.1); c00017_NZ_CABM.. (original name was: NZ_CABMOJ010000020.1); c00018_NZ_CABM.. (original name was: NZ_CABMOJ010000021.1); c00020_NZ_CABM.. (original name was: NZ_CABMOJ010000023.1); c00021_NZ_CABM.. (original name was: NZ_CABMOJ010000024.1); c00022_NZ_CABM.. (original name was: NZ_CABMOJ010000025.1); c00023_NZ_CABM.. (original name was: NZ_CABMOJ010000026.1); c00024_NZ_CABM.. (original name was: NZ_CABMOJ010000027.1); c00025_NZ_CABM.. (original name was: NZ_CABMOJ010000028.1); c00026_NZ_CABM.. (original name was: NZ_CABMOJ010000029.1); c00027_NZ_CABM.. (original name was: NZ_CABMOJ010000032.1); c00028_NZ_CABM.. (original name was: NZ_CABMOJ010000033.1); c00029_NZ_CABM.. (original name was: NZ_CABMOJ010000034.1); c00030_NZ_CABM.. (original name was: NZ_CABMOJ010000035.1); c00031_NZ_CABM.. (original name was: NZ_CABMOJ010000036.1); c00032_NZ_CABM.. (original name was: NZ_CABMOJ010000037.1); c00033_NZ_CABM.. (original name was: NZ_CABMOJ010000038.1); c00034_NZ_CABM.. (original name was: NZ_CABMOJ010000040.1); c00035_NZ_CABM.. (original name was: NZ_CABMOJ010000041.1); c00036_NZ_CABM.. (original name was: NZ_CABMOJ010000042.1); c00037_NZ_CABM.. (original name was: NZ_CABMOJ010000043.1); c00038_NZ_CABM.. (original name was: NZ_CABMOJ010000044.1); c00039_NZ_CABM.. (original name was: NZ_CABMOJ010000045.1); c00040_NZ_CABM.. (original name was: NZ_CABMOJ010000046.1); c00041_NZ_CABM.. (original name was: NZ_CABMOJ010000047.1); c00042_NZ_CABM.. (original name was: NZ_CABMOJ010000049.1); c00043_NZ_CABM.. (original name was: NZ_CABMOJ010000053.1); c00044_NZ_CABM.. (original name was: NZ_CABMOJ010000054.1); c00045_NZ_CABM.. (original name was: NZ_CABMOJ010000058.1); c00046_NZ_CABM.. (original name was: NZ_CABMOJ010000059.1); c00047_NZ_CABM.. (original name was: NZ_CABMOJ010000064.1); c00048_NZ_CABM.. (original name was: NZ_CABMOJ010000068.1); c00049_NZ_CABM.. (original name was: NZ_CABMOJ010000069.1); c00051_NZ_CABM.. (original name was: NZ_CABMOJ010000089.1); c00052_NZ_CABM.. (original name was: NZ_CABMOJ010000092.1); c00053_NZ_CABM.. (original name was: NZ_CABMOJ010000098.1)

Compact view

c00013_NZ_CABM.. - Region 1 - succinate2propionate

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Location: 99,497 - 132,363 nt. (total: 32,867 nt) Show pHMM detection rules used

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

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c00014_NZ_CABM.. - Region 1 - NADH_dehydrogenase_I,TPP_fatty_acids

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Location: 96,264 - 135,301 nt. (total: 39,038 nt) Show pHMM detection rules used

TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))
NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

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core biosynthetic genes

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regulatory genes

resistance genes

encapsulation genes

electron transport genes

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c00015_NZ_CABM.. - Region 1 - Fumarate2succinate

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Location: 16,018 - 29,672 nt. (total: 13,655 nt) Show pHMM detection rules used

Region on contig edge.

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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c00019_NZ_CABM.. - Region 1 - Pyruvate2acetate-formate

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Location: 160,338 - 183,320 nt. (total: 22,983 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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c00019_NZ_CABM.. - Region 2 - TPP_AA_metabolism

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Location: 340,647 - 375,598 nt. (total: 34,952 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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No matches found.

c00019_NZ_CABM.. - Region 3 - PFOR_II_pathway

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Location: 468,142 - 491,690 nt. (total: 23,549 nt) Show pHMM detection rules used

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

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c00050_NZ_CABM.. - Region 1 - Rnf_complex

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Location: 23,774 - 48,968 nt. (total: 25,195 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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core biosynthetic genes

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transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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