GCF_026797385.1_ASM2679738v1_genomic - 12 region(s)

Identified primary metabolite regions

c00004_NZ_JAMD.. (original name was: NZ_JAMDNA010000004.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 4.1	acetate2butyrate,fatty_acids-unassigned	Putative	101,753	134,842	Acetate to butyrate C. sporogenes	BUT	66%

c00007_NZ_JAMD.. (original name was: NZ_JAMDNA010000007.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 7.1	NADH_dehydrogenase_I	E-MGC	143,015	173,512	NADH dehydrogenase I Bacteroides sp.	NADHD	33%

c00008_NZ_JAMD.. (original name was: NZ_JAMDNA010000008.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 8.1	Pyruvate2acetate-formate	SCFA	104,961	128,139	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

c00009_NZ_JAMD.. (original name was: NZ_JAMDNA010000009.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 9.1	Fumarate2succinate	SCFA	131,415	147,850

c00011_NZ_JAMD.. (original name was: NZ_JAMDNA010000011.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 11.1	TPP_AA_metabolism	Putative	68,568	91,987

c00016_NZ_JAMD.. (original name was: NZ_JAMDNA010000016.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 16.1	Oxidative_glycerol	Other	34,321	57,215
Region 16.2	Glycine_cleavage	Other	75,424	100,526	Glycine cleavage C. sticklandii	GLY	60%

c00022_NZ_JAMD.. (original name was: NZ_JAMDNA010000022.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 22.1	porA	SCFA	75,154	98,495

c00032_NZ_JAMD.. (original name was: NZ_JAMDNA010000032.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 32.1	Putrescine2spermidine	Aliphatic_amine	20,249	41,076	Arginine degradation C. sticklandii	ARG	22%

c00034_NZ_JAMD.. (original name was: NZ_JAMDNA010000034.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 34.1	GR_fatty_acids,TMA	SCFA-other	10,739	56,090	Trimethylamine synthesis C. sporogenes	TMA	100%

c00040_NZ_JAMD.. (original name was: NZ_JAMDNA010000041.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 40.1	OD_fatty_acids	Putative	94,779	127,913	Leucine reductive branch C. difficile	LEU	25%

c00068_NZ_JAMD.. (original name was: NZ_JAMDNA010000070.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 68.1	EUT_pathway	SCFA-other	51,118	80,779	Ethanolamine degradation S. typhimurium	EUT	42%

No primary metabolite regions were found in these records:: c00001_NZ_JAMD.. (original name was: NZ_JAMDNA010000001.1); c00002_NZ_JAMD.. (original name was: NZ_JAMDNA010000002.1); c00003_NZ_JAMD.. (original name was: NZ_JAMDNA010000003.1); c00005_NZ_JAMD.. (original name was: NZ_JAMDNA010000005.1); c00006_NZ_JAMD.. (original name was: NZ_JAMDNA010000006.1); c00010_NZ_JAMD.. (original name was: NZ_JAMDNA010000010.1); c00012_NZ_JAMD.. (original name was: NZ_JAMDNA010000012.1); c00013_NZ_JAMD.. (original name was: NZ_JAMDNA010000013.1); c00014_NZ_JAMD.. (original name was: NZ_JAMDNA010000014.1); c00015_NZ_JAMD.. (original name was: NZ_JAMDNA010000015.1); c00017_NZ_JAMD.. (original name was: NZ_JAMDNA010000017.1); c00018_NZ_JAMD.. (original name was: NZ_JAMDNA010000018.1); c00019_NZ_JAMD.. (original name was: NZ_JAMDNA010000019.1); c00020_NZ_JAMD.. (original name was: NZ_JAMDNA010000020.1); c00021_NZ_JAMD.. (original name was: NZ_JAMDNA010000021.1); c00023_NZ_JAMD.. (original name was: NZ_JAMDNA010000023.1); c00024_NZ_JAMD.. (original name was: NZ_JAMDNA010000024.1); c00025_NZ_JAMD.. (original name was: NZ_JAMDNA010000025.1); c00026_NZ_JAMD.. (original name was: NZ_JAMDNA010000026.1); c00027_NZ_JAMD.. (original name was: NZ_JAMDNA010000027.1); c00028_NZ_JAMD.. (original name was: NZ_JAMDNA010000028.1); c00029_NZ_JAMD.. (original name was: NZ_JAMDNA010000029.1); c00030_NZ_JAMD.. (original name was: NZ_JAMDNA010000030.1); c00031_NZ_JAMD.. (original name was: NZ_JAMDNA010000031.1); c00033_NZ_JAMD.. (original name was: NZ_JAMDNA010000033.1); c00035_NZ_JAMD.. (original name was: NZ_JAMDNA010000035.1); c00036_NZ_JAMD.. (original name was: NZ_JAMDNA010000036.1); c00037_NZ_JAMD.. (original name was: NZ_JAMDNA010000038.1); c00038_NZ_JAMD.. (original name was: NZ_JAMDNA010000039.1); c00039_NZ_JAMD.. (original name was: NZ_JAMDNA010000040.1); c00041_NZ_JAMD.. (original name was: NZ_JAMDNA010000042.1); c00042_NZ_JAMD.. (original name was: NZ_JAMDNA010000043.1); c00043_NZ_JAMD.. (original name was: NZ_JAMDNA010000044.1); c00044_NZ_JAMD.. (original name was: NZ_JAMDNA010000045.1); c00045_NZ_JAMD.. (original name was: NZ_JAMDNA010000046.1); c00046_NZ_JAMD.. (original name was: NZ_JAMDNA010000047.1); c00047_NZ_JAMD.. (original name was: NZ_JAMDNA010000048.1); c00048_NZ_JAMD.. (original name was: NZ_JAMDNA010000049.1); c00049_NZ_JAMD.. (original name was: NZ_JAMDNA010000050.1); c00050_NZ_JAMD.. (original name was: NZ_JAMDNA010000051.1); c00051_NZ_JAMD.. (original name was: NZ_JAMDNA010000052.1); c00052_NZ_JAMD.. (original name was: NZ_JAMDNA010000053.1); c00053_NZ_JAMD.. (original name was: NZ_JAMDNA010000054.1); c00054_NZ_JAMD.. (original name was: NZ_JAMDNA010000055.1); c00055_NZ_JAMD.. (original name was: NZ_JAMDNA010000056.1); c00056_NZ_JAMD.. (original name was: NZ_JAMDNA010000057.1); c00057_NZ_JAMD.. (original name was: NZ_JAMDNA010000058.1); c00058_NZ_JAMD.. (original name was: NZ_JAMDNA010000059.1); c00059_NZ_JAMD.. (original name was: NZ_JAMDNA010000060.1); c00060_NZ_JAMD.. (original name was: NZ_JAMDNA010000061.1); c00061_NZ_JAMD.. (original name was: NZ_JAMDNA010000062.1); c00062_NZ_JAMD.. (original name was: NZ_JAMDNA010000063.1); c00063_NZ_JAMD.. (original name was: NZ_JAMDNA010000064.1); c00064_NZ_JAMD.. (original name was: NZ_JAMDNA010000065.1); c00065_NZ_JAMD.. (original name was: NZ_JAMDNA010000066.1); c00066_NZ_JAMD.. (original name was: NZ_JAMDNA010000067.1); c00067_NZ_JAMD.. (original name was: NZ_JAMDNA010000069.1); c00069_NZ_JAMD.. (original name was: NZ_JAMDNA010000072.1); c00070_NZ_JAMD.. (original name was: NZ_JAMDNA010000073.1); c00071_NZ_JAMD.. (original name was: NZ_JAMDNA010000074.1); c00072_NZ_JAMD.. (original name was: NZ_JAMDNA010000075.1); c00073_NZ_JAMD.. (original name was: NZ_JAMDNA010000077.1); c00074_NZ_JAMD.. (original name was: NZ_JAMDNA010000078.1); c00075_NZ_JAMD.. (original name was: NZ_JAMDNA010000079.1); c00076_NZ_JAMD.. (original name was: NZ_JAMDNA010000080.1); c00077_NZ_JAMD.. (original name was: NZ_JAMDNA010000081.1); c00078_NZ_JAMD.. (original name was: NZ_JAMDNA010000082.1); c00079_NZ_JAMD.. (original name was: NZ_JAMDNA010000083.1); c00080_NZ_JAMD.. (original name was: NZ_JAMDNA010000084.1); c00081_NZ_JAMD.. (original name was: NZ_JAMDNA010000085.1); c00082_NZ_JAMD.. (original name was: NZ_JAMDNA010000086.1); c00083_NZ_JAMD.. (original name was: NZ_JAMDNA010000087.1); c00084_NZ_JAMD.. (original name was: NZ_JAMDNA010000088.1); c00085_NZ_JAMD.. (original name was: NZ_JAMDNA010000089.1); c00086_NZ_JAMD.. (original name was: NZ_JAMDNA010000090.1); c00087_NZ_JAMD.. (original name was: NZ_JAMDNA010000091.1); c00088_NZ_JAMD.. (original name was: NZ_JAMDNA010000093.1); c00089_NZ_JAMD.. (original name was: NZ_JAMDNA010000094.1); c00090_NZ_JAMD.. (original name was: NZ_JAMDNA010000096.1); c00091_NZ_JAMD.. (original name was: NZ_JAMDNA010000097.1); c00092_NZ_JAMD.. (original name was: NZ_JAMDNA010000098.1); c00093_NZ_JAMD.. (original name was: NZ_JAMDNA010000099.1); c00094_NZ_JAMD.. (original name was: NZ_JAMDNA010000100.1); c00095_NZ_JAMD.. (original name was: NZ_JAMDNA010000101.1); c00096_NZ_JAMD.. (original name was: NZ_JAMDNA010000102.1); c00097_NZ_JAMD.. (original name was: NZ_JAMDNA010000103.1); c00098_NZ_JAMD.. (original name was: NZ_JAMDNA010000104.1); c00099_NZ_JAMD.. (original name was: NZ_JAMDNA010000105.1); c00100_NZ_JAMD.. (original name was: NZ_JAMDNA010000106.1); c00101_NZ_JAMD.. (original name was: NZ_JAMDNA010000107.1); c00102_NZ_JAMD.. (original name was: NZ_JAMDNA010000109.1); c00103_NZ_JAMD.. (original name was: NZ_JAMDNA010000110.1); c00104_NZ_JAMD.. (original name was: NZ_JAMDNA010000111.1); c00105_NZ_JAMD.. (original name was: NZ_JAMDNA010000112.1); c00106_NZ_JAMD.. (original name was: NZ_JAMDNA010000113.1); c00107_NZ_JAMD.. (original name was: NZ_JAMDNA010000114.1); c00108_NZ_JAMD.. (original name was: NZ_JAMDNA010000115.1); c00109_NZ_JAMD.. (original name was: NZ_JAMDNA010000116.1); c00110_NZ_JAMD.. (original name was: NZ_JAMDNA010000117.1); c00111_NZ_JAMD.. (original name was: NZ_JAMDNA010000119.1); c00112_NZ_JAMD.. (original name was: NZ_JAMDNA010000120.1); c00113_NZ_JAMD.. (original name was: NZ_JAMDNA010000123.1); c00114_NZ_JAMD.. (original name was: NZ_JAMDNA010000124.1); c00115_NZ_JAMD.. (original name was: NZ_JAMDNA010000125.1); c00116_NZ_JAMD.. (original name was: NZ_JAMDNA010000126.1); c00117_NZ_JAMD.. (original name was: NZ_JAMDNA010000127.1); c00118_NZ_JAMD.. (original name was: NZ_JAMDNA010000129.1); c00119_NZ_JAMD.. (original name was: NZ_JAMDNA010000130.1); c00120_NZ_JAMD.. (original name was: NZ_JAMDNA010000131.1); c00121_NZ_JAMD.. (original name was: NZ_JAMDNA010000134.1); c00122_NZ_JAMD.. (original name was: NZ_JAMDNA010000136.1); c00123_NZ_JAMD.. (original name was: NZ_JAMDNA010000137.1); c00124_NZ_JAMD.. (original name was: NZ_JAMDNA010000138.1); c00125_NZ_JAMD.. (original name was: NZ_JAMDNA010000139.1); c00126_NZ_JAMD.. (original name was: NZ_JAMDNA010000140.1); c00127_NZ_JAMD.. (original name was: NZ_JAMDNA010000141.1); c00128_NZ_JAMD.. (original name was: NZ_JAMDNA010000142.1); c00129_NZ_JAMD.. (original name was: NZ_JAMDNA010000143.1); c00130_NZ_JAMD.. (original name was: NZ_JAMDNA010000144.1); c00131_NZ_JAMD.. (original name was: NZ_JAMDNA010000145.1); c00132_NZ_JAMD.. (original name was: NZ_JAMDNA010000146.1); c00133_NZ_JAMD.. (original name was: NZ_JAMDNA010000147.1); c00134_NZ_JAMD.. (original name was: NZ_JAMDNA010000148.1); c00135_NZ_JAMD.. (original name was: NZ_JAMDNA010000152.1); c00136_NZ_JAMD.. (original name was: NZ_JAMDNA010000153.1); c00137_NZ_JAMD.. (original name was: NZ_JAMDNA010000154.1); c00138_NZ_JAMD.. (original name was: NZ_JAMDNA010000155.1); c00139_NZ_JAMD.. (original name was: NZ_JAMDNA010000156.1); c00140_NZ_JAMD.. (original name was: NZ_JAMDNA010000159.1); c00141_NZ_JAMD.. (original name was: NZ_JAMDNA010000160.1); c00142_NZ_JAMD.. (original name was: NZ_JAMDNA010000162.1); c00143_NZ_JAMD.. (original name was: NZ_JAMDNA010000163.1); c00144_NZ_JAMD.. (original name was: NZ_JAMDNA010000164.1)

Compact view

c00004_NZ_JAMD.. - Region 1 - acetate2butyrate,fatty_acids-unassigned

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Location: 101,753 - 134,842 nt. (total: 33,090 nt) Show pHMM detection rules used

acetate2butyrate: (not (POR or POR_N or PFOR_II) and minimum(4, [Acyl-CoA_dh_1, Acyl-CoA_dh_2, ECH_2, ETF, ETF_alpha, HCDH_N, Thiolase_N, ketoacyl-synt]) and HCDH and minimum(1, [EC1_2-faecali, ECH1_Enoyl_CoA_DH1, ECH1_Enoyl_CoA_DH2, ECH1_Enoyl_CoA_DH3, ECH1_Enoyl_CoA_DH4, Thiolase_C]))
fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

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c00007_NZ_JAMD.. - Region 1 - NADH_dehydrogenase_I

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Location: 143,015 - 173,512 nt. (total: 30,498 nt) Show pHMM detection rules used

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

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electron transport genes

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c00008_NZ_JAMD.. - Region 1 - Pyruvate2acetate-formate

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Location: 104,961 - 128,139 nt. (total: 23,179 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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core biosynthetic genes

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c00009_NZ_JAMD.. - Region 1 - Fumarate2succinate

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Location: 131,415 - 147,850 nt. (total: 16,436 nt) Show pHMM detection rules used

Region on contig edge.

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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No matches found.

c00011_NZ_JAMD.. - Region 1 - TPP_AA_metabolism

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Location: 68,568 - 91,987 nt. (total: 23,420 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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core biosynthetic genes

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c00016_NZ_JAMD.. - Region 1 - Oxidative_glycerol

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Location: 34,321 - 57,215 nt. (total: 22,895 nt) Show pHMM detection rules used

Oxidative_glycerol: ((Fe-ADH or Fe-ADH_2) and Dak1 and Dak2)

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core biosynthetic genes

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c00016_NZ_JAMD.. - Region 2 - Glycine_cleavage

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Location: 75,424 - 100,526 nt. (total: 25,103 nt) Show pHMM detection rules used

Glycine_cleavage: (minimum(2, [Aminotran_5, GCV_H, GCV_T, GDC-P, SoxG]) and GCV_H and GCV_T_C)

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c00022_NZ_JAMD.. - Region 1 - porA

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Location: 75,154 - 98,495 nt. (total: 23,342 nt) Show pHMM detection rules used

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

Legend:

core biosynthetic genes

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c00032_NZ_JAMD.. - Region 1 - Putrescine2spermidine

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Location: 20,249 - 41,076 nt. (total: 20,828 nt) Show pHMM detection rules used

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

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core biosynthetic genes

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c00034_NZ_JAMD.. - Region 1 - GR_fatty_acids,TMA

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Location: 10,739 - 56,090 nt. (total: 45,352 nt) Show pHMM detection rules used

GR_fatty_acids: (minimum(1, [Gly_430_pcre, Gly_8-9_TMA, Gly_radical, Gly_radical_scatole, PFL-like, PFL_6_pcresol, PFL_9_tma, PFL_acetate1, PFL_acetate2, PFL_proline, PFL_toluene]) and not NRDD and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (POR or POR_N or PFOR_II))
TMA: (minimum(2, [Aldedh, BMC, PduV-EutP, Radical_SAM]) and PFL_9_tma and Gly_8-9_TMA and not NRDD)

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c00040_NZ_JAMD.. - Region 1 - OD_fatty_acids

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Location: 94,779 - 127,913 nt. (total: 33,135 nt) Show pHMM detection rules used

OD_fatty_acids: (minimum(1, [PFOR_II, POR, POR_N]) and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (Gly_radical_scatole or Gly_radical or Gly_430_pcre or Gly_8-9_TMA))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

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c00068_NZ_JAMD.. - Region 1 - EUT_pathway

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Location: 51,118 - 80,779 nt. (total: 29,662 nt) Show pHMM detection rules used

Region on contig edge.

EUT_pathway: (minimum(3, [Aldedh, BMC, Cob_adeno_trans, EutA, EutH, EutK_C, EutN_CcmL, EutQ, Fe-ADH, Fe-ADH_2, Malic_M, MreB_Mbl, PTA_PTB, PduV-EutP, malic]) and EutB and EutC)

Legend:

core biosynthetic genes

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transport-related genes

regulatory genes

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