GCF_900109885.1_IMG-taxon_2634166346_annotated_assembly_genomic - 12 region(s)

Identified primary metabolite regions

NZ_FOBS01000019 (original name was: NZ_FOBS01000019.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 19.1	acetate2butyrate	SCFA	4,337	32,683	Acetate to butyrate C. sporogenes	BUT	33%
Region 19.2	Putrescine2spermidine	Aliphatic_amine	41,757	62,875

NZ_FOBS01000014 (original name was: NZ_FOBS01000014.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 21.1	OD_aldehydes_related,PFOR_II_pathway	SCFA	19,345	48,011	PFOR II pathway B. thetaiotaomicron	PFORII	100%

NZ_FOBS01000016 (original name was: NZ_FOBS01000016.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 27.1	fatty_acids-unassigned	Putative	5,146	37,581

NZ_FOBS01000004 (original name was: NZ_FOBS01000004.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 38.1	Rnf_complex	E-MGC	162,129	187,916	Rnf complex C. sporogenes	RNF	83%

NZ_FOBS01000005 (original name was: NZ_FOBS01000005.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 43.1	Arginine2putrescine	Aliphatic_amine	102,247	127,604

NZ_FOBS01000007 (original name was: NZ_FOBS01000007.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 48.1	Others_HGD_unassigned	Putative	1	14,749

NZ_FOBS01000024 (original name was: NZ_FOBS01000024.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 49.1	NADH_dehydrogenase_I	E-MGC	5,542	36,217	NADH dehydrogenase I E. coli	NADHD	61%

NZ_FOBS01000030 (original name was: NZ_FOBS01000030.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 50.1	Others_HGD_unassigned	Putative	7,292	31,724

NZ_FOBS01000002 (original name was: NZ_FOBS01000002.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 51.1	Formate_dehydrogenase	E-MGC	147,142	171,720	Formate dehydrogenase E. coli	FORM	66%
Region 51.2	TPP_AA_metabolism	Putative	211,841	239,401

NZ_FOBS01000018 (original name was: NZ_FOBS01000018.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 57.1	Formate_dehydrogenase	E-MGC	42,332	70,999

No primary metabolite regions were found in these records:: NZ_FOBS01000071 (original name was: NZ_FOBS01000071.1); NZ_FOBS01000070 (original name was: NZ_FOBS01000070.1); NZ_FOBS01000069 (original name was: NZ_FOBS01000069.1); NZ_FOBS01000067 (original name was: NZ_FOBS01000067.1); NZ_FOBS01000066 (original name was: NZ_FOBS01000066.1); NZ_FOBS01000064 (original name was: NZ_FOBS01000064.1); NZ_FOBS01000062 (original name was: NZ_FOBS01000062.1); NZ_FOBS01000061 (original name was: NZ_FOBS01000061.1); NZ_FOBS01000060 (original name was: NZ_FOBS01000060.1); NZ_FOBS01000059 (original name was: NZ_FOBS01000059.1); NZ_FOBS01000057 (original name was: NZ_FOBS01000057.1); NZ_FOBS01000055 (original name was: NZ_FOBS01000055.1); NZ_FOBS01000054 (original name was: NZ_FOBS01000054.1); NZ_FOBS01000053 (original name was: NZ_FOBS01000053.1); NZ_FOBS01000050 (original name was: NZ_FOBS01000050.1); NZ_FOBS01000049 (original name was: NZ_FOBS01000049.1); NZ_FOBS01000063 (original name was: NZ_FOBS01000063.1); NZ_FOBS01000047 (original name was: NZ_FOBS01000047.1); NZ_FOBS01000021 (original name was: NZ_FOBS01000021.1); NZ_FOBS01000065 (original name was: NZ_FOBS01000065.1); NZ_FOBS01000031 (original name was: NZ_FOBS01000031.1); NZ_FOBS01000038 (original name was: NZ_FOBS01000038.1); NZ_FOBS01000012 (original name was: NZ_FOBS01000012.1); NZ_FOBS01000044 (original name was: NZ_FOBS01000044.1); NZ_FOBS01000009 (original name was: NZ_FOBS01000009.1); NZ_FOBS01000046 (original name was: NZ_FOBS01000046.1); NZ_FOBS01000048 (original name was: NZ_FOBS01000048.1); NZ_FOBS01000022 (original name was: NZ_FOBS01000022.1); NZ_FOBS01000010 (original name was: NZ_FOBS01000010.1); NZ_FOBS01000013 (original name was: NZ_FOBS01000013.1); NZ_FOBS01000001 (original name was: NZ_FOBS01000001.1); NZ_FOBS01000011 (original name was: NZ_FOBS01000011.1); NZ_FOBS01000036 (original name was: NZ_FOBS01000036.1); NZ_FOBS01000003 (original name was: NZ_FOBS01000003.1); NZ_FOBS01000041 (original name was: NZ_FOBS01000041.1); NZ_FOBS01000040 (original name was: NZ_FOBS01000040.1); NZ_FOBS01000006 (original name was: NZ_FOBS01000006.1); NZ_FOBS01000035 (original name was: NZ_FOBS01000035.1); NZ_FOBS01000015 (original name was: NZ_FOBS01000015.1); NZ_FOBS01000056 (original name was: NZ_FOBS01000056.1); NZ_FOBS01000020 (original name was: NZ_FOBS01000020.1); NZ_FOBS01000033 (original name was: NZ_FOBS01000033.1); NZ_FOBS01000008 (original name was: NZ_FOBS01000008.1); NZ_FOBS01000027 (original name was: NZ_FOBS01000027.1); NZ_FOBS01000023 (original name was: NZ_FOBS01000023.1); NZ_FOBS01000025 (original name was: NZ_FOBS01000025.1); NZ_FOBS01000051 (original name was: NZ_FOBS01000051.1); NZ_FOBS01000034 (original name was: NZ_FOBS01000034.1); NZ_FOBS01000068 (original name was: NZ_FOBS01000068.1); NZ_FOBS01000026 (original name was: NZ_FOBS01000026.1); NZ_FOBS01000028 (original name was: NZ_FOBS01000028.1); NZ_FOBS01000017 (original name was: NZ_FOBS01000017.1); NZ_FOBS01000029 (original name was: NZ_FOBS01000029.1); NZ_FOBS01000032 (original name was: NZ_FOBS01000032.1); NZ_FOBS01000037 (original name was: NZ_FOBS01000037.1); NZ_FOBS01000058 (original name was: NZ_FOBS01000058.1); NZ_FOBS01000039 (original name was: NZ_FOBS01000039.1); NZ_FOBS01000042 (original name was: NZ_FOBS01000042.1); NZ_FOBS01000052 (original name was: NZ_FOBS01000052.1); NZ_FOBS01000043 (original name was: NZ_FOBS01000043.1); NZ_FOBS01000045 (original name was: NZ_FOBS01000045.1)

Compact view

c00019_NZ_FOBS.. - Region 1 - acetate2butyrate

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Location: 4,337 - 32,683 nt. (total: 28,347 nt) Show pHMM detection rules used

acetate2butyrate: (not (POR or POR_N or PFOR_II) and minimum(4, [Acyl-CoA_dh_1, Acyl-CoA_dh_2, ECH_2, ETF, ETF_alpha, HCDH_N, Thiolase_N, ketoacyl-synt]) and HCDH and minimum(1, [EC1_2-faecali, ECH1_Enoyl_CoA_DH1, ECH1_Enoyl_CoA_DH2, ECH1_Enoyl_CoA_DH3, ECH1_Enoyl_CoA_DH4, Thiolase_C]))

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c00019_NZ_FOBS.. - Region 2 - Putrescine2spermidine

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Location: 41,757 - 62,875 nt. (total: 21,119 nt) Show pHMM detection rules used

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

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c00021_NZ_FOBS.. - Region 1 - OD_aldehydes_related,PFOR_II_pathway

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Location: 19,345 - 48,011 nt. (total: 28,667 nt) Show pHMM detection rules used

OD_aldehydes_related: (minimum(1, [PFOR_II, POR, POR_N]) and minimum(1, [AFOR_C, AFOR_N, Aldedh]) and not (Gly_radical_scatole or Gly_radical or Gly_430_pcre or Gly_8-9_TMA))
PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

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c00027_NZ_FOBS.. - Region 1 - fatty_acids-unassigned

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Location: 5,146 - 37,581 nt. (total: 32,436 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

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c00038_NZ_FOBS.. - Region 1 - Rnf_complex

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Location: 162,129 - 187,916 nt. (total: 25,788 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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c00043_NZ_FOBS.. - Region 1 - Arginine2putrescine

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Location: 102,247 - 127,604 nt. (total: 25,358 nt) Show pHMM detection rules used

Arginine2putrescine: (minimum(3, [AdoMet_dc, Amidinotransf, Arginase, OKR_DC_1, OKR_DC_1_7_arginine, OTCace]) or ((OKR_DC_1_5_ornithine or OKR_DC_1 or Orn_Arg_deC_N) and minimum(1, [Arginase, OTCace, OTCace_N, PAD_porph])))

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c00048_NZ_FOBS.. - Region 1 - Others_HGD_unassigned

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Location: 1 - 14,749 nt. (total: 14,749 nt) Show pHMM detection rules used

Region on contig edge.

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

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c00049_NZ_FOBS.. - Region 1 - NADH_dehydrogenase_I

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Location: 5,542 - 36,217 nt. (total: 30,676 nt) Show pHMM detection rules used

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

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c00050_NZ_FOBS.. - Region 1 - Others_HGD_unassigned

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Location: 7,292 - 31,724 nt. (total: 24,433 nt) Show pHMM detection rules used

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

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c00051_NZ_FOBS.. - Region 1 - Formate_dehydrogenase

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Location: 147,142 - 171,720 nt. (total: 24,579 nt) Show pHMM detection rules used

Formate_dehydrogenase: (Molybdopterin and Form-deh_trans and not (Nitr_red_bet_C or Nitr_red_alph_N) and minimum(3, [Fer4_11, Fer4_4, Molybdop_Fe4S4, Molydop_binding, Ni_hydr_CYTB]))

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c00051_NZ_FOBS.. - Region 2 - TPP_AA_metabolism

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Location: 211,841 - 239,401 nt. (total: 27,561 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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c00057_NZ_FOBS.. - Region 1 - Formate_dehydrogenase

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Location: 42,332 - 70,999 nt. (total: 28,668 nt) Show pHMM detection rules used

Region on contig edge.

Formate_dehydrogenase: (Molybdopterin and Form-deh_trans and not (Nitr_red_bet_C or Nitr_red_alph_N) and minimum(3, [Fer4_11, Fer4_4, Molybdop_Fe4S4, Molydop_binding, Ni_hydr_CYTB]))

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