GCF_000175615.1_ASM17561v1_genomic - 3 region(s)

Identified primary metabolite regions

NZ_ACVO01000017 (original name was: NZ_ACVO01000017.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 8.1	Fumarate2succinate	SCFA	164,707	187,260	Fumarate2succinate suc dh E. coli	SUC	100%

NZ_ACVO01000015 (original name was: NZ_ACVO01000015.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 10.1	Nitrate_reductase	E-MGC	224,322	251,258	Nitrate reductase E. coli	NIR	40%
Region 10.2	TPP_AA_metabolism	Putative	559,243	575,395

No primary metabolite regions were found in these records:: NZ_ACVO01000025 (original name was: NZ_ACVO01000025.1); NZ_ACVO01000024 (original name was: NZ_ACVO01000024.1); NZ_ACVO01000023 (original name was: NZ_ACVO01000023.1); NZ_ACVO01000021 (original name was: NZ_ACVO01000021.1); NZ_ACVO01000020 (original name was: NZ_ACVO01000020.1); NZ_ACVO01000019 (original name was: NZ_ACVO01000019.1); NZ_ACVO01000018 (original name was: NZ_ACVO01000018.1); NZ_ACVO01000016 (original name was: NZ_ACVO01000016.1); NZ_ACVO01000014 (original name was: NZ_ACVO01000014.1); NZ_ACVO01000013 (original name was: NZ_ACVO01000013.1); NZ_ACVO01000012 (original name was: NZ_ACVO01000012.1); NZ_ACVO01000011 (original name was: NZ_ACVO01000011.1); NZ_ACVO01000010 (original name was: NZ_ACVO01000010.1); NZ_ACVO01000009 (original name was: NZ_ACVO01000009.1); NZ_ACVO01000007 (original name was: NZ_ACVO01000007.1); NZ_ACVO01000006 (original name was: NZ_ACVO01000006.1); NZ_ACVO01000005 (original name was: NZ_ACVO01000005.1); NZ_ACVO01000004 (original name was: NZ_ACVO01000004.1); NZ_ACVO01000003 (original name was: NZ_ACVO01000003.1); NZ_ACVO01000001 (original name was: NZ_ACVO01000001.1)

Compact view

c00008_NZ_ACVO.. - Region 1 - Fumarate2succinate

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Location: 164,707 - 187,260 nt. (total: 22,554 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

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KnownClusterBlast

Similar known gene clusters

c00010_NZ_ACVO.. - Region 1 - Nitrate_reductase

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Location: 224,322 - 251,258 nt. (total: 26,937 nt) Show pHMM detection rules used

Nitrate_reductase: (Nitr_red_bet_C and Nitrate_red_del and Nitrate_red_gam and Molybdopterin and minimum(2, [Fer4_11, Molybdopterin, Molydop_binding, Nitr_red_alph_N]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00010_NZ_ACVO.. - Region 2 - TPP_AA_metabolism

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Location: 559,243 - 575,395 nt. (total: 16,153 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.