GCF_000177355.1_ASM17735v1_genomic - 6 region(s)

Identified primary metabolite regions

NZ_ADFQ01000086 (original name was: NZ_ADFQ01000086.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 26.1	NADH_dehydrogenase_I,PFOR_II_pathway	SCFA	1	30,239	NADH dehydrogenase I Bacteroides sp.	NADHD	47%

NZ_ADFQ01000085 (original name was: NZ_ADFQ01000085.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 27.1	Respiratory_glycerol	E-MGC	29,148	53,269	GlycerolP to glyceroneP E. coli	GLYP	100%

NZ_ADFQ01000051 (original name was: NZ_ADFQ01000051.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 57.1	TPP_fatty_acids	Putative	134,697	157,795

NZ_ADFQ01000016 (original name was: NZ_ADFQ01000016.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 84.1	Fumarate2succinate	SCFA	32,772	56,252	Fumarate to succinate B. thetaiotaomicron	SUC	100%
Region 84.2	OD_fatty_acids	Putative	129,112	151,462

NZ_ADFQ01000003 (original name was: NZ_ADFQ01000003.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 95.1	fatty_acids-unassigned	Putative	117,545	146,294

No primary metabolite regions were found in these records:: NZ_ADFQ01000116 (original name was: NZ_ADFQ01000116.1); NZ_ADFQ01000115 (original name was: NZ_ADFQ01000115.1); NZ_ADFQ01000114 (original name was: NZ_ADFQ01000114.1); NZ_ADFQ01000113 (original name was: NZ_ADFQ01000113.1); NZ_ADFQ01000112 (original name was: NZ_ADFQ01000112.1); NZ_ADFQ01000111 (original name was: NZ_ADFQ01000111.1); NZ_ADFQ01000110 (original name was: NZ_ADFQ01000110.1); NZ_ADFQ01000109 (original name was: NZ_ADFQ01000109.1); NZ_ADFQ01000108 (original name was: NZ_ADFQ01000108.1); NZ_ADFQ01000107 (original name was: NZ_ADFQ01000107.1); NZ_ADFQ01000105 (original name was: NZ_ADFQ01000105.1); NZ_ADFQ01000102 (original name was: NZ_ADFQ01000102.1); NZ_ADFQ01000101 (original name was: NZ_ADFQ01000101.1); NZ_ADFQ01000100 (original name was: NZ_ADFQ01000100.1); NZ_ADFQ01000099 (original name was: NZ_ADFQ01000099.1); NZ_ADFQ01000098 (original name was: NZ_ADFQ01000098.1); NZ_ADFQ01000097 (original name was: NZ_ADFQ01000097.1); NZ_ADFQ01000096 (original name was: NZ_ADFQ01000096.1); NZ_ADFQ01000095 (original name was: NZ_ADFQ01000095.1); NZ_ADFQ01000093 (original name was: NZ_ADFQ01000093.1); NZ_ADFQ01000092 (original name was: NZ_ADFQ01000092.1); NZ_ADFQ01000091 (original name was: NZ_ADFQ01000091.1); NZ_ADFQ01000090 (original name was: NZ_ADFQ01000090.1); NZ_ADFQ01000089 (original name was: NZ_ADFQ01000089.1); NZ_ADFQ01000087 (original name was: NZ_ADFQ01000087.1); NZ_ADFQ01000084 (original name was: NZ_ADFQ01000084.1); NZ_ADFQ01000083 (original name was: NZ_ADFQ01000083.1); NZ_ADFQ01000082 (original name was: NZ_ADFQ01000082.1); NZ_ADFQ01000081 (original name was: NZ_ADFQ01000081.1); NZ_ADFQ01000080 (original name was: NZ_ADFQ01000080.1); NZ_ADFQ01000079 (original name was: NZ_ADFQ01000079.1); NZ_ADFQ01000078 (original name was: NZ_ADFQ01000078.1); NZ_ADFQ01000077 (original name was: NZ_ADFQ01000077.1); NZ_ADFQ01000075 (original name was: NZ_ADFQ01000075.1); NZ_ADFQ01000074 (original name was: NZ_ADFQ01000074.1); NZ_ADFQ01000073 (original name was: NZ_ADFQ01000073.1); NZ_ADFQ01000072 (original name was: NZ_ADFQ01000072.1); NZ_ADFQ01000071 (original name was: NZ_ADFQ01000071.1); NZ_ADFQ01000070 (original name was: NZ_ADFQ01000070.1); NZ_ADFQ01000069 (original name was: NZ_ADFQ01000069.1); NZ_ADFQ01000067 (original name was: NZ_ADFQ01000067.1); NZ_ADFQ01000066 (original name was: NZ_ADFQ01000066.1); NZ_ADFQ01000064 (original name was: NZ_ADFQ01000064.1); NZ_ADFQ01000063 (original name was: NZ_ADFQ01000063.1); NZ_ADFQ01000062 (original name was: NZ_ADFQ01000062.1); NZ_ADFQ01000061 (original name was: NZ_ADFQ01000061.1); NZ_ADFQ01000059 (original name was: NZ_ADFQ01000059.1); NZ_ADFQ01000058 (original name was: NZ_ADFQ01000058.1); NZ_ADFQ01000057 (original name was: NZ_ADFQ01000057.1); NZ_ADFQ01000056 (original name was: NZ_ADFQ01000056.1); NZ_ADFQ01000055 (original name was: NZ_ADFQ01000055.1); NZ_ADFQ01000054 (original name was: NZ_ADFQ01000054.1); NZ_ADFQ01000053 (original name was: NZ_ADFQ01000053.1); NZ_ADFQ01000052 (original name was: NZ_ADFQ01000052.1); NZ_ADFQ01000050 (original name was: NZ_ADFQ01000050.1); NZ_ADFQ01000049 (original name was: NZ_ADFQ01000049.1); NZ_ADFQ01000047 (original name was: NZ_ADFQ01000047.1); NZ_ADFQ01000046 (original name was: NZ_ADFQ01000046.1); NZ_ADFQ01000045 (original name was: NZ_ADFQ01000045.1); NZ_ADFQ01000044 (original name was: NZ_ADFQ01000044.1); NZ_ADFQ01000042 (original name was: NZ_ADFQ01000042.1); NZ_ADFQ01000041 (original name was: NZ_ADFQ01000041.1); NZ_ADFQ01000040 (original name was: NZ_ADFQ01000040.1); NZ_ADFQ01000039 (original name was: NZ_ADFQ01000039.1); NZ_ADFQ01000038 (original name was: NZ_ADFQ01000038.1); NZ_ADFQ01000036 (original name was: NZ_ADFQ01000036.1); NZ_ADFQ01000035 (original name was: NZ_ADFQ01000035.1); NZ_ADFQ01000034 (original name was: NZ_ADFQ01000034.1); NZ_ADFQ01000032 (original name was: NZ_ADFQ01000032.1); NZ_ADFQ01000031 (original name was: NZ_ADFQ01000031.1); NZ_ADFQ01000030 (original name was: NZ_ADFQ01000030.1); NZ_ADFQ01000027 (original name was: NZ_ADFQ01000027.1); NZ_ADFQ01000025 (original name was: NZ_ADFQ01000025.1); NZ_ADFQ01000024 (original name was: NZ_ADFQ01000024.1); NZ_ADFQ01000023 (original name was: NZ_ADFQ01000023.1); NZ_ADFQ01000022 (original name was: NZ_ADFQ01000022.1); NZ_ADFQ01000021 (original name was: NZ_ADFQ01000021.1); NZ_ADFQ01000020 (original name was: NZ_ADFQ01000020.1); NZ_ADFQ01000019 (original name was: NZ_ADFQ01000019.1); NZ_ADFQ01000017 (original name was: NZ_ADFQ01000017.1); NZ_ADFQ01000015 (original name was: NZ_ADFQ01000015.1); NZ_ADFQ01000014 (original name was: NZ_ADFQ01000014.1); NZ_ADFQ01000013 (original name was: NZ_ADFQ01000013.1); NZ_ADFQ01000012 (original name was: NZ_ADFQ01000012.1); NZ_ADFQ01000011 (original name was: NZ_ADFQ01000011.1); NZ_ADFQ01000010 (original name was: NZ_ADFQ01000010.1); NZ_ADFQ01000008 (original name was: NZ_ADFQ01000008.1); NZ_ADFQ01000007 (original name was: NZ_ADFQ01000007.1); NZ_ADFQ01000005 (original name was: NZ_ADFQ01000005.1); NZ_ADFQ01000004 (original name was: NZ_ADFQ01000004.1); NZ_ADFQ01000002 (original name was: NZ_ADFQ01000002.1); NZ_ADFQ01000001 (original name was: NZ_ADFQ01000001.1)

Compact view

c00026_NZ_ADFQ.. - Region 1 - NADH_dehydrogenase_I,PFOR_II_pathway

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Location: 1 - 30,239 nt. (total: 30,239 nt) Show pHMM detection rules used

Region on contig edge.

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))
PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

Legend:

core biosynthetic genes

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transport-related genes

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c00027_NZ_ADFQ.. - Region 1 - Respiratory_glycerol

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Location: 29,148 - 53,269 nt. (total: 24,122 nt) Show pHMM detection rules used

Respiratory_glycerol: (DAO and Fer2_BFD and FAD_binding_2 and Fer4_8)

Legend:

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resistance genes

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c00057_NZ_ADFQ.. - Region 1 - TPP_fatty_acids

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Location: 134,697 - 157,795 nt. (total: 23,099 nt) Show pHMM detection rules used

Region on contig edge.

TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))

Legend:

core biosynthetic genes

additional biosynthetic genes

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regulatory genes

resistance genes

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electron transport genes

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c00084_NZ_ADFQ.. - Region 1 - Fumarate2succinate

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Location: 32,772 - 56,252 nt. (total: 23,481 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

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c00084_NZ_ADFQ.. - Region 2 - OD_fatty_acids

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Location: 129,112 - 151,462 nt. (total: 22,351 nt) Show pHMM detection rules used

Region on contig edge.

OD_fatty_acids: (minimum(1, [PFOR_II, POR, POR_N]) and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (Gly_radical_scatole or Gly_radical or Gly_430_pcre or Gly_8-9_TMA))

Legend:

core biosynthetic genes

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regulatory genes

resistance genes

encapsulation genes

electron transport genes

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c00095_NZ_ADFQ.. - Region 1 - fatty_acids-unassigned

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Location: 117,545 - 146,294 nt. (total: 28,750 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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